Wall clock time and date at job start Tue Mar 31 2020 08:03:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46498 * 109.47138 * 2 1 4 4 C 1.46501 * 120.00402 * 273.84557 * 3 2 1 5 5 C 1.50703 * 109.47053 * 270.00504 * 4 3 2 6 6 H 1.07992 * 120.00422 * 359.97438 * 5 4 3 7 7 C 1.37882 * 119.99441 * 179.97438 * 5 4 3 8 8 N 1.31516 * 120.00081 * 359.97438 * 7 5 4 9 9 Si 1.86799 * 119.99590 * 179.97438 * 7 5 4 10 10 H 1.48502 * 109.47114 * 60.00018 * 9 7 5 11 11 H 1.48493 * 109.47031 * 179.97438 * 9 7 5 12 12 H 1.48504 * 109.47072 * 300.00010 * 9 7 5 13 13 C 1.34779 * 119.99614 * 93.84949 * 3 2 1 14 14 O 1.21679 * 119.99754 * 186.57396 * 13 3 2 15 15 C 1.46815 * 119.99928 * 6.57686 * 13 3 2 16 16 N 1.37790 * 125.84397 * 333.41756 * 15 13 3 17 17 H 0.97005 * 125.37686 * 0.02562 * 16 15 13 18 18 C 1.34220 * 109.23921 * 180.12061 * 16 15 13 19 19 C 1.50704 * 125.80840 * 179.89348 * 18 16 15 20 20 C 1.38288 * 108.38622 * 359.62588 * 18 16 15 21 21 C 1.47244 * 126.47207 * 180.19577 * 20 18 16 22 22 O 1.21537 * 120.00394 * 90.02918 * 21 20 18 23 23 O 1.34766 * 120.00075 * 270.01940 * 21 20 18 24 24 C 1.36331 * 125.83769 * 153.11926 * 15 13 3 25 25 C 1.50704 * 126.49852 * 0.03008 * 24 15 13 26 26 H 1.09004 * 109.46626 * 299.99966 * 1 2 3 27 27 H 1.08999 * 109.46844 * 59.99387 * 1 2 3 28 28 H 1.09001 * 109.47267 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.46626 * 240.00034 * 2 1 3 30 30 H 1.09000 * 109.47360 * 120.00700 * 2 1 3 31 31 H 1.09007 * 109.46616 * 30.00381 * 4 3 2 32 32 H 1.08998 * 109.47051 * 150.00305 * 4 3 2 33 33 H 0.97002 * 119.99219 * 180.02562 * 8 7 5 34 34 H 1.08992 * 109.47305 * 269.68567 * 19 18 16 35 35 H 1.08996 * 109.47175 * 149.68498 * 19 18 16 36 36 H 1.09000 * 109.46892 * 29.68755 * 19 18 16 37 37 H 0.96703 * 117.00173 * 179.97438 * 23 21 20 38 38 H 1.08997 * 109.46989 * 270.02405 * 25 24 15 39 39 H 1.08997 * 109.46714 * 30.02627 * 25 24 15 40 40 H 1.09001 * 109.46657 * 150.02745 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1824 2.1003 -1.2658 5 6 3.5751 1.8742 -1.7952 6 1 4.2689 1.2570 -1.2438 7 6 3.9636 2.4553 -2.9837 8 7 3.1185 3.2065 -3.6555 9 14 5.6901 2.1757 -3.6396 10 1 5.9056 0.7235 -3.8630 11 1 5.8559 2.9034 -4.9233 12 1 6.6813 2.6773 -2.6540 13 6 2.3169 1.9904 1.1646 14 8 2.6072 3.1719 1.1762 15 6 2.2918 1.2282 2.4192 16 7 1.5309 0.1064 2.6667 17 1 0.9222 -0.3096 2.0364 18 6 1.7634 -0.3184 3.9185 19 6 1.1258 -1.5150 4.5763 20 6 2.6923 0.5252 4.4999 21 6 3.2350 0.4218 5.8648 22 8 4.2380 -0.2325 6.0720 23 8 2.6196 1.0528 6.8842 24 6 3.0216 1.5060 3.5367 25 6 3.9950 2.6431 3.7118 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3634 -1.0277 -0.0005 29 1 1.8933 -0.5139 -0.8900 30 1 1.8934 -0.5139 0.8899 31 1 1.4545 1.7328 -1.9893 32 1 2.0248 3.1662 -1.1012 33 1 3.3918 3.6150 -4.4918 34 1 0.2117 -1.2066 5.0836 35 1 1.8177 -1.9422 5.3021 36 1 0.8869 -2.2615 3.8190 37 1 3.0128 0.9553 7.7623 38 1 4.9899 2.3201 3.4055 39 1 3.6818 3.4873 3.0975 40 1 4.0172 2.9443 4.7592 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000829692533.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:03:20 Heat of formation + Delta-G solvation = -75.537786 kcal Electronic energy + Delta-G solvation = -24178.201705 eV Core-core repulsion = 20573.199696 eV Total energy + Delta-G solvation = -3605.002009 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.85289 -39.81611 -38.52714 -36.02558 -35.76328 -33.05764 -32.81309 -31.71674 -30.40995 -28.22950 -27.70220 -25.92978 -24.30786 -23.22206 -22.65572 -20.35809 -19.98248 -18.95484 -17.98127 -17.23166 -16.49708 -16.37828 -15.80496 -15.51246 -15.05917 -14.79316 -14.33252 -14.12549 -13.79424 -13.36571 -13.19915 -13.17997 -13.01097 -12.78410 -12.47802 -12.27991 -12.13444 -12.10876 -11.89847 -11.63417 -11.39026 -11.29404 -11.04790 -10.87367 -10.77702 -10.60471 -10.18438 -9.73677 -9.19390 -8.82462 -8.47845 -8.11676 -7.76965 -6.09407 -4.14768 1.65136 2.09773 2.22077 2.89369 3.30115 3.30524 3.34675 3.37711 3.62746 3.92776 4.41271 4.53874 4.77930 4.90523 4.99551 5.15195 5.23115 5.25294 5.26772 5.35987 5.43865 5.54948 5.56971 5.68070 5.80211 5.99284 6.02488 6.14472 6.23929 6.35666 6.43809 6.61598 6.82334 7.00263 7.25348 7.34748 7.42626 7.86515 7.87432 8.15884 8.23498 8.78906 8.94498 9.50747 10.98578 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.019855 B = 0.004379 C = 0.003972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1409.869354 B = 6392.542167 C = 7047.826981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.084 3.916 3 N -0.592 5.592 4 C 0.247 3.753 5 C -0.531 4.531 6 H 0.058 0.942 7 C 0.064 3.936 8 N -0.894 5.894 9 Si 0.899 3.101 10 H -0.277 1.277 11 H -0.286 1.286 12 H -0.275 1.275 13 C 0.579 3.421 14 O -0.521 6.521 15 C -0.031 4.031 16 N -0.525 5.525 17 H 0.426 0.574 18 C 0.088 3.912 19 C -0.094 4.094 20 C -0.214 4.214 21 C 0.570 3.430 22 O -0.510 6.510 23 O -0.510 6.510 24 C -0.043 4.043 25 C -0.099 4.099 26 H 0.050 0.950 27 H 0.075 0.925 28 H 0.067 0.933 29 H 0.092 0.908 30 H 0.068 0.932 31 H 0.034 0.966 32 H 0.048 0.952 33 H 0.265 0.735 34 H 0.083 0.917 35 H 0.083 0.917 36 H 0.075 0.925 37 H 0.407 0.593 38 H 0.070 0.930 39 H 0.094 0.906 40 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.891 -9.725 16.141 20.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.041 4.041 3 N -0.323 5.323 4 C 0.128 3.872 5 C -0.570 4.570 6 H 0.076 0.924 7 C -0.139 4.139 8 N -0.532 5.532 9 Si 0.726 3.274 10 H -0.203 1.203 11 H -0.211 1.211 12 H -0.201 1.201 13 C 0.366 3.634 14 O -0.397 6.397 15 C -0.143 4.143 16 N -0.128 5.128 17 H 0.272 0.728 18 C -0.034 4.034 19 C -0.152 4.152 20 C -0.223 4.223 21 C 0.412 3.588 22 O -0.398 6.398 23 O -0.321 6.321 24 C -0.049 4.049 25 C -0.156 4.156 26 H 0.069 0.931 27 H 0.094 0.906 28 H 0.086 0.914 29 H 0.110 0.890 30 H 0.086 0.914 31 H 0.052 0.948 32 H 0.066 0.934 33 H 0.074 0.926 34 H 0.102 0.898 35 H 0.102 0.898 36 H 0.094 0.906 37 H 0.264 0.736 38 H 0.089 0.911 39 H 0.113 0.887 40 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -6.758 -9.130 15.414 19.147 hybrid contribution 0.924 -0.569 -0.194 1.102 sum -5.834 -9.699 15.220 18.967 Atomic orbital electron populations 1.22403 0.96521 1.02011 1.03255 1.21825 0.93576 0.85161 1.03506 1.48203 1.63120 1.12921 1.08055 1.19347 0.96910 0.93363 0.77546 1.21389 0.98089 1.31293 1.06240 0.92404 1.24919 0.97644 0.94771 0.96559 1.69922 1.35226 1.32181 1.15886 0.86548 0.84478 0.78235 0.78131 1.20253 1.21130 1.20054 1.16979 0.78562 0.86321 0.81578 1.90781 1.48920 1.14306 1.85701 1.20261 1.02983 0.92945 0.98086 1.42661 1.35068 1.22888 1.12178 0.72756 1.20480 0.98648 0.98396 0.85850 1.20502 1.01120 0.92868 1.00681 1.18120 1.08608 1.03455 0.92093 1.20045 0.80106 0.74170 0.84446 1.90898 1.24742 1.39065 1.85046 1.84741 1.57470 1.69566 1.20299 1.19422 0.98591 0.96493 0.90441 1.20458 0.96889 0.96185 1.02032 0.93084 0.90573 0.91446 0.88989 0.91373 0.94779 0.93351 0.92579 0.89818 0.89820 0.90601 0.73559 0.91125 0.88716 0.92211 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.18 9.25 37.16 0.34 -1.83 16 2 C 0.08 1.28 5.67 -4.04 -0.02 1.26 16 3 N -0.59 -12.25 2.46 -176.54 -0.43 -12.69 16 4 C 0.25 6.26 5.23 -5.19 -0.03 6.24 16 5 C -0.53 -14.78 9.39 -34.44 -0.32 -15.11 16 6 H 0.06 1.62 7.81 -52.49 -0.41 1.21 16 7 C 0.06 1.79 5.46 -17.82 -0.10 1.69 16 8 N -0.89 -26.06 13.29 55.43 0.74 -25.32 16 9 Si 0.90 21.66 29.54 -169.99 -5.02 16.64 16 10 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 11 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 12 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 13 C 0.58 12.35 7.52 -12.79 -0.10 12.25 16 14 O -0.52 -12.95 14.58 5.21 0.08 -12.87 16 15 C -0.03 -0.55 6.37 -82.41 -0.52 -1.07 16 16 N -0.53 -7.00 4.70 -5.60 -0.03 -7.02 16 17 H 0.43 4.67 4.25 -40.82 -0.17 4.50 16 18 C 0.09 1.09 7.21 -81.53 -0.59 0.50 16 19 C -0.09 -0.75 10.24 36.01 0.37 -0.38 16 20 C -0.21 -3.19 6.01 -105.03 -0.63 -3.82 16 21 C 0.57 7.79 7.51 34.39 0.26 8.05 16 22 O -0.51 -8.15 17.90 -19.30 -0.35 -8.50 16 23 O -0.51 -5.25 13.44 -40.67 -0.55 -5.80 16 24 C -0.04 -0.73 6.20 -104.12 -0.65 -1.37 16 25 C -0.10 -1.63 9.93 36.01 0.36 -1.27 16 26 H 0.05 0.58 7.30 -51.93 -0.38 0.20 16 27 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 28 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.09 1.45 8.10 -51.93 -0.42 1.03 16 30 H 0.07 0.92 4.59 -51.93 -0.24 0.68 16 31 H 0.03 0.86 8.07 -51.92 -0.42 0.44 16 32 H 0.05 1.39 7.34 -51.93 -0.38 1.00 16 33 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 34 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.08 0.66 7.93 -51.93 -0.41 0.25 16 36 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.41 2.10 9.11 45.56 0.42 2.51 16 38 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 39 H 0.09 1.73 6.30 -51.93 -0.33 1.40 16 40 H 0.06 0.85 8.05 -51.93 -0.42 0.43 16 LS Contribution 341.07 15.07 5.14 5.14 Total: -1.00 -35.33 341.07 -6.46 -41.79 By element: Atomic # 1 Polarization: 7.91 SS G_CDS: -4.41 Total: 3.50 kcal Atomic # 6 Polarization: 6.76 SS G_CDS: -1.63 Total: 5.13 kcal Atomic # 7 Polarization: -45.31 SS G_CDS: 0.28 Total: -45.03 kcal Atomic # 8 Polarization: -26.35 SS G_CDS: -0.82 Total: -27.17 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -35.33 -6.46 -41.79 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000829692533.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.748 kcal (2) G-P(sol) polarization free energy of solvation -35.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.461 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.790 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.538 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds