Wall clock time and date at job start Tue Mar 31 2020 08:03:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46498 * 109.47138 * 2 1 4 4 C 1.46501 * 120.00402 * 273.84557 * 3 2 1 5 5 C 1.50703 * 109.47053 * 270.00504 * 4 3 2 6 6 H 1.07992 * 120.00422 * 359.97438 * 5 4 3 7 7 C 1.37882 * 119.99441 * 179.97438 * 5 4 3 8 8 N 1.31516 * 120.00081 * 359.97438 * 7 5 4 9 9 Si 1.86799 * 119.99590 * 179.97438 * 7 5 4 10 10 H 1.48502 * 109.47114 * 60.00018 * 9 7 5 11 11 H 1.48493 * 109.47031 * 179.97438 * 9 7 5 12 12 H 1.48504 * 109.47072 * 300.00010 * 9 7 5 13 13 C 1.34779 * 119.99614 * 93.84949 * 3 2 1 14 14 O 1.21679 * 119.99754 * 186.57396 * 13 3 2 15 15 C 1.46815 * 119.99928 * 6.57686 * 13 3 2 16 16 N 1.37790 * 125.84397 * 333.41756 * 15 13 3 17 17 H 0.97005 * 125.37686 * 0.02562 * 16 15 13 18 18 C 1.34220 * 109.23921 * 180.12061 * 16 15 13 19 19 C 1.50704 * 125.80840 * 179.89348 * 18 16 15 20 20 C 1.38288 * 108.38622 * 359.62588 * 18 16 15 21 21 C 1.47244 * 126.47207 * 180.19577 * 20 18 16 22 22 O 1.21537 * 120.00394 * 90.02918 * 21 20 18 23 23 O 1.34766 * 120.00075 * 270.01940 * 21 20 18 24 24 C 1.36331 * 125.83769 * 153.11926 * 15 13 3 25 25 C 1.50704 * 126.49852 * 0.03008 * 24 15 13 26 26 H 1.09004 * 109.46626 * 299.99966 * 1 2 3 27 27 H 1.08999 * 109.46844 * 59.99387 * 1 2 3 28 28 H 1.09001 * 109.47267 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.46626 * 240.00034 * 2 1 3 30 30 H 1.09000 * 109.47360 * 120.00700 * 2 1 3 31 31 H 1.09007 * 109.46616 * 30.00381 * 4 3 2 32 32 H 1.08998 * 109.47051 * 150.00305 * 4 3 2 33 33 H 0.97002 * 119.99219 * 180.02562 * 8 7 5 34 34 H 1.08992 * 109.47305 * 269.68567 * 19 18 16 35 35 H 1.08996 * 109.47175 * 149.68498 * 19 18 16 36 36 H 1.09000 * 109.46892 * 29.68755 * 19 18 16 37 37 H 0.96703 * 117.00173 * 179.97438 * 23 21 20 38 38 H 1.08997 * 109.46989 * 270.02405 * 25 24 15 39 39 H 1.08997 * 109.46714 * 30.02627 * 25 24 15 40 40 H 1.09001 * 109.46657 * 150.02745 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1824 2.1003 -1.2658 5 6 3.5751 1.8742 -1.7952 6 1 4.2689 1.2570 -1.2438 7 6 3.9636 2.4553 -2.9837 8 7 3.1185 3.2065 -3.6555 9 14 5.6901 2.1757 -3.6396 10 1 5.9056 0.7235 -3.8630 11 1 5.8559 2.9034 -4.9233 12 1 6.6813 2.6773 -2.6540 13 6 2.3169 1.9904 1.1646 14 8 2.6072 3.1719 1.1762 15 6 2.2918 1.2282 2.4192 16 7 1.5309 0.1064 2.6667 17 1 0.9222 -0.3096 2.0364 18 6 1.7634 -0.3184 3.9185 19 6 1.1258 -1.5150 4.5763 20 6 2.6923 0.5252 4.4999 21 6 3.2350 0.4218 5.8648 22 8 4.2380 -0.2325 6.0720 23 8 2.6196 1.0528 6.8842 24 6 3.0216 1.5060 3.5367 25 6 3.9950 2.6431 3.7118 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3634 -1.0277 -0.0005 29 1 1.8933 -0.5139 -0.8900 30 1 1.8934 -0.5139 0.8899 31 1 1.4545 1.7328 -1.9893 32 1 2.0248 3.1662 -1.1012 33 1 3.3918 3.6150 -4.4918 34 1 0.2117 -1.2066 5.0836 35 1 1.8177 -1.9422 5.3021 36 1 0.8869 -2.2615 3.8190 37 1 3.0128 0.9553 7.7623 38 1 4.9899 2.3201 3.4055 39 1 3.6818 3.4873 3.0975 40 1 4.0172 2.9443 4.7592 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000829692533.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:03:20 Heat of formation + Delta-G solvation = -100.230807 kcal Electronic energy + Delta-G solvation = -24179.272474 eV Core-core repulsion = 20573.199696 eV Total energy + Delta-G solvation = -3606.072779 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -43.03876 -40.90505 -40.05211 -37.34452 -36.97376 -35.03338 -34.08316 -32.87062 -31.77128 -29.58312 -29.20045 -27.34346 -25.69460 -24.64020 -24.10887 -21.60557 -21.16229 -20.22728 -19.00509 -18.74283 -18.48255 -17.55173 -17.21979 -16.93634 -16.39065 -16.20051 -15.86316 -15.50831 -14.96973 -14.62909 -14.40829 -14.21956 -14.18884 -14.08328 -13.77294 -13.69567 -13.37082 -13.25698 -13.19191 -13.15560 -12.76435 -12.66637 -12.57886 -12.46966 -12.24913 -12.03930 -11.85693 -11.77832 -10.88180 -10.65975 -10.00779 -9.64882 -9.18630 -8.24935 -6.39748 0.41167 1.05856 1.06876 1.35990 1.39875 1.47229 1.80062 2.01389 2.23253 2.38183 2.53588 3.05134 3.54046 3.65924 3.79397 3.95484 4.05796 4.13675 4.36421 4.42892 4.52640 4.61641 4.68281 4.71419 4.73756 4.80965 4.91399 4.97141 5.03901 5.11855 5.20158 5.26649 5.44405 5.50843 5.54805 5.62639 5.77147 6.02105 6.23519 6.59270 6.68527 7.02898 7.18201 7.34326 8.81959 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.019855 B = 0.004379 C = 0.003972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1409.869354 B = 6392.542167 C = 7047.826981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.077 3.923 3 N -0.597 5.597 4 C 0.264 3.736 5 C -0.548 4.548 6 H 0.051 0.949 7 C 0.013 3.987 8 N -0.925 5.925 9 Si 0.965 3.035 10 H -0.261 1.261 11 H -0.276 1.276 12 H -0.279 1.279 13 C 0.573 3.427 14 O -0.574 6.574 15 C -0.061 4.061 16 N -0.512 5.512 17 H 0.438 0.562 18 C 0.124 3.876 19 C -0.096 4.096 20 C -0.244 4.244 21 C 0.582 3.418 22 O -0.538 6.538 23 O -0.501 6.501 24 C -0.052 4.052 25 C -0.097 4.097 26 H 0.057 0.943 27 H 0.055 0.945 28 H 0.114 0.886 29 H 0.086 0.914 30 H 0.091 0.909 31 H 0.030 0.970 32 H 0.003 0.997 33 H 0.268 0.732 34 H 0.109 0.891 35 H 0.088 0.912 36 H 0.104 0.896 37 H 0.430 0.570 38 H 0.066 0.934 39 H 0.068 0.932 40 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.597 -12.706 17.802 23.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.046 4.046 3 N -0.327 5.327 4 C 0.143 3.857 5 C -0.586 4.586 6 H 0.069 0.931 7 C -0.186 4.186 8 N -0.564 5.564 9 Si 0.789 3.211 10 H -0.186 1.186 11 H -0.201 1.201 12 H -0.205 1.205 13 C 0.362 3.638 14 O -0.454 6.454 15 C -0.172 4.172 16 N -0.116 5.116 17 H 0.286 0.714 18 C 0.001 3.999 19 C -0.153 4.153 20 C -0.251 4.251 21 C 0.425 3.575 22 O -0.428 6.428 23 O -0.314 6.314 24 C -0.059 4.059 25 C -0.154 4.154 26 H 0.076 0.924 27 H 0.075 0.925 28 H 0.133 0.867 29 H 0.104 0.896 30 H 0.109 0.891 31 H 0.048 0.952 32 H 0.022 0.978 33 H 0.077 0.923 34 H 0.128 0.872 35 H 0.107 0.893 36 H 0.123 0.877 37 H 0.292 0.708 38 H 0.085 0.915 39 H 0.087 0.913 40 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -7.505 -12.156 17.096 22.279 hybrid contribution 1.077 0.340 -0.585 1.272 sum -6.428 -11.816 16.511 21.296 Atomic orbital electron populations 1.22354 0.93492 1.04853 1.02625 1.22168 0.96015 0.82062 1.04330 1.48173 1.63295 1.14851 1.06421 1.18791 0.95915 0.91467 0.79549 1.21646 0.99016 1.31396 1.06569 0.93109 1.25788 1.01725 0.94320 0.96790 1.70032 1.37184 1.32860 1.16307 0.85515 0.79158 0.78981 0.77463 1.18571 1.20137 1.20475 1.17497 0.77452 0.86074 0.82799 1.90736 1.51257 1.16699 1.86731 1.19548 1.05934 0.95141 0.96591 1.42527 1.34598 1.21602 1.12902 0.71375 1.21269 0.96124 0.97966 0.84583 1.20783 1.01791 0.91283 1.01451 1.18327 1.10083 1.03823 0.92903 1.19747 0.79469 0.73736 0.84577 1.90893 1.25880 1.40537 1.85508 1.84679 1.57034 1.68421 1.21265 1.19626 0.98311 0.96914 0.91098 1.20405 0.96683 0.95568 1.02792 0.92444 0.92544 0.86739 0.89587 0.89107 0.95168 0.97844 0.92280 0.87228 0.89296 0.87687 0.70777 0.91547 0.91289 0.90067 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.80 9.25 71.98 0.67 -3.14 16 2 C 0.08 2.29 5.67 86.38 0.49 2.78 16 3 N -0.60 -25.65 2.46 -830.69 -2.04 -27.69 16 4 C 0.26 14.13 5.23 85.63 0.45 14.58 16 5 C -0.55 -31.59 9.39 25.60 0.24 -31.35 16 6 H 0.05 2.93 7.81 -2.91 -0.02 2.91 16 7 C 0.01 0.77 5.46 84.66 0.46 1.23 16 8 N -0.92 -55.43 13.29 21.45 0.28 -55.15 16 9 Si 0.96 44.97 29.54 68.60 2.03 47.00 16 10 H -0.26 -11.45 7.11 99.48 0.71 -10.74 16 11 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 12 H -0.28 -13.12 7.11 99.48 0.71 -12.42 16 13 C 0.57 25.57 7.52 86.49 0.65 26.22 16 14 O -0.57 -30.71 14.58 -4.28 -0.06 -30.78 16 15 C -0.06 -2.15 6.37 40.01 0.25 -1.90 16 16 N -0.51 -12.44 4.70 -171.64 -0.81 -13.24 16 17 H 0.44 8.18 4.25 -92.70 -0.39 7.78 16 18 C 0.12 2.66 7.21 42.21 0.30 2.96 16 19 C -0.10 -1.02 10.24 71.24 0.73 -0.29 16 20 C -0.24 -6.78 6.01 -20.13 -0.12 -6.90 16 21 C 0.58 14.55 7.51 70.19 0.53 15.08 16 22 O -0.54 -16.19 17.90 19.72 0.35 -15.84 16 23 O -0.50 -8.82 13.44 -56.77 -0.76 -9.59 16 24 C -0.05 -1.77 6.20 -19.54 -0.12 -1.89 16 25 C -0.10 -3.33 9.93 71.24 0.71 -2.63 16 26 H 0.06 1.18 7.30 -2.39 -0.02 1.17 16 27 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 28 H 0.11 1.44 8.14 -2.39 -0.02 1.42 16 29 H 0.09 2.66 8.10 -2.39 -0.02 2.64 16 30 H 0.09 2.26 4.59 -2.39 -0.01 2.25 16 31 H 0.03 1.62 8.07 -2.38 -0.02 1.60 16 32 H 0.00 0.21 7.34 -2.39 -0.02 0.20 16 33 H 0.27 15.11 8.31 -92.71 -0.77 14.34 16 34 H 0.11 0.75 8.14 -2.39 -0.02 0.73 16 35 H 0.09 0.97 7.93 -2.39 -0.02 0.95 16 36 H 0.10 0.60 8.14 -2.39 -0.02 0.58 16 37 H 0.43 3.06 9.11 -74.06 -0.67 2.38 16 38 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 39 H 0.07 2.71 6.30 -2.39 -0.02 2.70 16 40 H 0.08 2.32 8.05 -2.39 -0.02 2.30 16 Total: -1.00 -82.00 341.07 4.25 -77.75 By element: Atomic # 1 Polarization: 12.77 SS G_CDS: 0.02 Total: 12.80 kcal Atomic # 6 Polarization: 9.51 SS G_CDS: 5.24 Total: 14.75 kcal Atomic # 7 Polarization: -93.52 SS G_CDS: -2.56 Total: -96.08 kcal Atomic # 8 Polarization: -55.73 SS G_CDS: -0.47 Total: -56.20 kcal Atomic # 14 Polarization: 44.97 SS G_CDS: 2.03 Total: 47.00 kcal Total: -82.00 4.25 -77.75 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000829692533.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.485 kcal (2) G-P(sol) polarization free energy of solvation -81.998 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.252 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.746 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.231 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds