Wall clock time and date at job start Tue Mar 31 2020 07:05:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42903 * 109.47123 * 2 1 4 4 C 1.52999 * 109.47059 * 120.00527 * 2 1 3 5 5 N 1.46904 * 109.47069 * 306.35243 * 4 2 1 6 6 C 1.46902 * 111.00006 * 266.68127 * 5 4 2 7 7 C 1.50698 * 109.47272 * 80.72959 * 6 5 4 8 8 H 1.08001 * 120.00099 * 5.79628 * 7 6 5 9 9 C 1.37874 * 120.00207 * 185.79459 * 7 6 5 10 10 N 1.31508 * 120.00366 * 180.02562 * 9 7 6 11 11 Si 1.86801 * 119.99981 * 0.02562 * 9 7 6 12 12 H 1.48510 * 109.47060 * 89.99805 * 11 9 7 13 13 H 1.48494 * 109.47469 * 209.99852 * 11 9 7 14 14 H 1.48497 * 109.47037 * 330.00313 * 11 9 7 15 15 C 1.46898 * 110.99818 * 142.72646 * 5 4 2 16 16 C 1.50700 * 109.46987 * 293.95014 * 15 5 4 17 17 C 1.38234 * 119.61286 * 95.02452 * 16 15 5 18 18 C 1.38632 * 119.15821 * 179.74690 * 17 16 15 19 19 C 1.38677 * 118.42123 * 0.47194 * 18 17 16 20 20 C 1.38183 * 119.16004 * 359.50931 * 19 18 17 21 21 N 1.31846 * 119.62158 * 275.00227 * 16 15 5 22 22 C 1.50699 * 109.46550 * 240.00285 * 2 1 3 23 23 O 1.20830 * 120.00263 * 264.99622 * 22 2 1 24 24 O 1.34228 * 120.00093 * 85.00728 * 22 2 1 25 25 H 1.09005 * 109.47075 * 294.14334 * 1 2 3 26 26 H 1.09003 * 109.47273 * 54.13448 * 1 2 3 27 27 H 1.08998 * 109.47599 * 174.13667 * 1 2 3 28 28 H 0.96708 * 113.99522 * 179.97438 * 3 2 1 29 29 H 1.09000 * 109.46873 * 186.35271 * 4 2 1 30 30 H 1.08993 * 109.47275 * 66.35202 * 4 2 1 31 31 H 1.08999 * 109.46950 * 200.73163 * 6 5 4 32 32 H 1.09003 * 109.47053 * 320.73154 * 6 5 4 33 33 H 0.97003 * 120.00365 * 179.97438 * 10 9 7 34 34 H 1.09000 * 109.46874 * 173.95616 * 15 5 4 35 35 H 1.08995 * 109.47420 * 53.95255 * 15 5 4 36 36 H 1.07995 * 120.41886 * 359.95611 * 17 16 15 37 37 H 1.07996 * 120.78762 * 180.23668 * 18 17 16 38 38 H 1.07991 * 120.41837 * 179.78549 * 19 18 17 39 39 H 1.08003 * 119.61821 * 180.25363 * 20 19 18 40 40 H 0.96700 * 117.00033 * 180.02562 * 24 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 2.0400 -0.7214 1.2492 5 7 1.4292 -0.1231 2.4438 6 6 2.2896 0.9268 3.0053 7 6 2.0982 2.2029 2.2270 8 1 1.3403 2.2589 1.4596 9 6 2.8906 3.2990 2.4945 10 7 2.7233 4.4128 1.8156 11 14 4.2020 3.2020 3.8213 12 1 5.4787 2.7365 3.2223 13 1 4.3982 4.5455 4.4226 14 1 3.7717 2.2468 4.8736 15 6 1.1259 -1.1494 3.4500 16 6 0.0551 -2.0693 2.9224 17 6 0.4147 -3.2513 2.3024 18 6 -0.5782 -4.0930 1.8252 19 6 -1.9012 -3.7079 1.9813 20 6 -2.1843 -2.5114 2.6120 21 7 -1.2137 -1.7376 3.0578 22 6 2.0322 -0.7104 -1.2305 23 8 2.3196 -1.8827 -1.1764 24 8 2.1604 -0.0407 -2.3867 25 1 -0.3633 0.4204 0.9378 26 1 -0.3634 0.6021 -0.8328 27 1 -0.3634 -1.0222 -0.1050 28 1 2.9704 1.4236 0.0004 29 1 3.1240 -0.6239 1.3078 30 1 1.7725 -1.7765 1.1941 31 1 2.0241 1.0945 4.0491 32 1 3.3322 0.6150 2.9412 33 1 3.2806 5.1841 2.0041 34 1 0.7749 -0.6698 4.3638 35 1 2.0261 -1.7252 3.6646 36 1 1.4558 -3.5173 2.1942 37 1 -0.3271 -5.0245 1.3400 38 1 -2.7003 -4.3372 1.6186 39 1 -3.2122 -2.2063 2.7412 40 1 2.4860 -0.5389 -3.1489 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000833523969.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:05:52 Heat of formation + Delta-G solvation = -72.718821 kcal Electronic energy + Delta-G solvation = -25067.979559 eV Core-core repulsion = 21463.099789 eV Total energy + Delta-G solvation = -3604.879769 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.41783 -39.96923 -37.65977 -35.89766 -35.35606 -32.64485 -32.35011 -31.48155 -30.76002 -27.83969 -26.78030 -24.69772 -23.82738 -23.27551 -21.60520 -20.81584 -19.38781 -18.05969 -17.20872 -16.77872 -16.51927 -16.16565 -15.53183 -15.43727 -15.05973 -14.93520 -14.23728 -13.80781 -13.64218 -13.47425 -13.21831 -13.14263 -12.90194 -12.32377 -11.92000 -11.90752 -11.80942 -11.63460 -11.41055 -11.31954 -11.10110 -11.02719 -10.61071 -10.26646 -10.15661 -9.89777 -9.75181 -9.57529 -9.18961 -8.88641 -8.52303 -8.28867 -7.48926 -5.86594 -3.79713 1.20574 1.40425 2.38865 3.22519 3.30880 3.40848 3.42771 3.90253 4.44776 4.50959 4.73249 4.85182 4.90413 4.95717 5.13151 5.22719 5.29897 5.38732 5.43850 5.52987 5.63416 5.70642 5.80816 5.92232 6.05053 6.10426 6.24651 6.25470 6.33842 6.35710 6.64848 6.73533 6.80359 6.82240 6.92986 7.65030 7.79751 7.91487 8.06795 8.22173 8.53308 8.79193 9.48447 9.73753 11.24150 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.014148 B = 0.006548 C = 0.005101 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1978.537797 B = 4274.809484 C = 5487.518077 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.155 3.845 3 O -0.479 6.479 4 C 0.044 3.956 5 N -0.505 5.505 6 C 0.160 3.840 7 C -0.489 4.489 8 H 0.124 0.876 9 C 0.066 3.934 10 N -0.896 5.896 11 Si 0.856 3.144 12 H -0.283 1.283 13 H -0.289 1.289 14 H -0.272 1.272 15 C 0.098 3.902 16 C 0.150 3.850 17 C -0.169 4.169 18 C -0.076 4.076 19 C -0.184 4.184 20 C 0.099 3.901 21 N -0.460 5.460 22 C 0.452 3.548 23 O -0.528 6.528 24 O -0.502 6.502 25 H 0.105 0.895 26 H 0.058 0.942 27 H 0.048 0.952 28 H 0.372 0.628 29 H 0.046 0.954 30 H 0.076 0.924 31 H 0.026 0.974 32 H -0.013 1.013 33 H 0.259 0.741 34 H 0.093 0.907 35 H 0.041 0.959 36 H 0.130 0.870 37 H 0.129 0.871 38 H 0.129 0.871 39 H 0.152 0.848 40 H 0.397 0.603 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.494 -15.693 -2.706 16.546 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.111 3.889 3 O -0.285 6.285 4 C -0.085 4.085 5 N -0.229 5.229 6 C 0.034 3.966 7 C -0.527 4.527 8 H 0.141 0.859 9 C -0.134 4.134 10 N -0.536 5.536 11 Si 0.685 3.315 12 H -0.209 1.209 13 H -0.215 1.215 14 H -0.197 1.197 15 C -0.031 4.031 16 C 0.011 3.989 17 C -0.190 4.190 18 C -0.102 4.102 19 C -0.204 4.204 20 C -0.059 4.059 21 N -0.169 5.169 22 C 0.295 3.705 23 O -0.417 6.417 24 O -0.311 6.311 25 H 0.124 0.876 26 H 0.078 0.922 27 H 0.067 0.933 28 H 0.222 0.778 29 H 0.064 0.936 30 H 0.095 0.905 31 H 0.044 0.956 32 H 0.004 0.996 33 H 0.069 0.931 34 H 0.112 0.888 35 H 0.059 0.941 36 H 0.148 0.852 37 H 0.147 0.853 38 H 0.147 0.853 39 H 0.170 0.830 40 H 0.254 0.746 Dipole moment (debyes) X Y Z Total from point charges -5.761 -14.430 -2.062 15.674 hybrid contribution 2.737 -1.774 -0.113 3.264 sum -3.024 -16.204 -2.174 16.627 Atomic orbital electron populations 1.21583 0.90162 1.00699 1.05429 1.20939 0.97012 0.85296 0.85655 1.87248 1.26682 1.19297 1.95240 1.22588 0.97120 0.97735 0.91100 1.61724 1.47376 1.09706 1.04055 1.20459 0.88834 0.91157 0.96122 1.21617 1.20060 0.92249 1.18821 0.85880 1.24881 0.97065 0.95743 0.95702 1.69890 1.40159 1.02538 1.41044 0.87189 0.83232 0.77344 0.83780 1.20881 1.21514 1.19698 1.21061 0.93247 0.92435 0.96323 1.21272 0.92068 0.92137 0.93388 1.22025 1.00553 0.96011 1.00391 1.21499 0.92875 0.99093 0.96754 1.22080 0.97185 0.98991 1.02186 1.22782 0.98747 0.90526 0.93812 1.67555 1.00160 1.31804 1.17369 1.25524 0.73272 0.86022 0.85724 1.90639 1.47221 1.18147 1.85696 1.84730 1.78693 1.47156 1.20567 0.87638 0.92248 0.93257 0.77825 0.93627 0.90532 0.95588 0.99581 0.93122 0.88838 0.94090 0.85216 0.85317 0.85303 0.83033 0.74563 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.18 8.70 37.16 0.32 -1.85 16 2 C 0.16 2.84 1.12 -91.77 -0.10 2.73 16 3 O -0.48 -10.13 7.98 -49.12 -0.39 -10.53 16 4 C 0.04 0.79 3.83 -3.82 -0.01 0.77 16 5 N -0.50 -9.74 3.14 -237.52 -0.74 -10.48 16 6 C 0.16 3.58 3.85 -4.98 -0.02 3.56 16 7 C -0.49 -12.72 7.24 -34.44 -0.25 -12.97 16 8 H 0.12 3.52 5.75 -52.49 -0.30 3.22 16 9 C 0.07 1.81 5.47 -17.82 -0.10 1.71 16 10 N -0.90 -26.36 13.96 55.43 0.77 -25.59 16 11 Si 0.86 20.62 27.36 -169.99 -4.65 15.97 16 12 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 13 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 14 H -0.27 -6.36 6.71 56.52 0.38 -5.98 16 15 C 0.10 1.62 5.21 -4.98 -0.03 1.59 16 16 C 0.15 2.30 5.81 -82.59 -0.48 1.82 16 17 C -0.17 -2.24 8.09 -39.44 -0.32 -2.56 16 18 C -0.08 -0.87 10.18 -39.27 -0.40 -1.27 16 19 C -0.18 -1.99 10.11 -39.44 -0.40 -2.39 16 20 C 0.10 1.24 11.18 -17.55 -0.20 1.04 16 21 N -0.46 -7.22 10.27 -9.47 -0.10 -7.32 16 22 C 0.45 7.60 7.17 36.00 0.26 7.86 16 23 O -0.53 -9.43 16.72 -18.75 -0.31 -9.74 16 24 O -0.50 -7.30 13.18 -44.42 -0.59 -7.89 16 25 H 0.10 2.13 7.24 -51.93 -0.38 1.75 16 26 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 27 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 28 H 0.37 7.56 8.66 45.56 0.39 7.95 16 29 H 0.05 0.84 7.34 -51.93 -0.38 0.46 16 30 H 0.08 1.29 4.46 -51.93 -0.23 1.06 16 31 H 0.03 0.60 7.10 -51.93 -0.37 0.23 16 32 H -0.01 -0.30 6.58 -51.93 -0.34 -0.64 16 33 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 34 H 0.09 1.59 7.80 -51.93 -0.40 1.18 16 35 H 0.04 0.61 8.02 -51.93 -0.42 0.19 16 36 H 0.13 1.58 7.56 -52.49 -0.40 1.18 16 37 H 0.13 1.14 8.06 -52.49 -0.42 0.72 16 38 H 0.13 1.01 8.06 -52.49 -0.42 0.59 16 39 H 0.15 1.49 8.06 -52.48 -0.42 1.07 16 40 H 0.40 3.72 9.10 45.56 0.41 4.13 16 LS Contribution 329.86 15.07 4.97 4.97 Total: -1.00 -32.06 329.86 -6.44 -38.50 By element: Atomic # 1 Polarization: 15.72 SS G_CDS: -3.68 Total: 12.04 kcal Atomic # 6 Polarization: 1.78 SS G_CDS: -1.72 Total: 0.06 kcal Atomic # 7 Polarization: -43.32 SS G_CDS: -0.07 Total: -43.39 kcal Atomic # 8 Polarization: -26.86 SS G_CDS: -1.29 Total: -28.16 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -4.65 Total: 15.97 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -32.06 -6.44 -38.50 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000833523969.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.216 kcal (2) G-P(sol) polarization free energy of solvation -32.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.277 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.441 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.503 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.719 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds