Wall clock time and date at job start Tue Mar 31 2020 07:05:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42903 * 109.47123 * 2 1 4 4 C 1.52999 * 109.47059 * 120.00527 * 2 1 3 5 5 N 1.46904 * 109.47069 * 306.35243 * 4 2 1 6 6 C 1.46902 * 111.00006 * 266.68127 * 5 4 2 7 7 C 1.50698 * 109.47272 * 80.72959 * 6 5 4 8 8 H 1.08001 * 120.00099 * 5.79628 * 7 6 5 9 9 C 1.37874 * 120.00207 * 185.79459 * 7 6 5 10 10 N 1.31508 * 120.00366 * 180.02562 * 9 7 6 11 11 Si 1.86801 * 119.99981 * 0.02562 * 9 7 6 12 12 H 1.48510 * 109.47060 * 89.99805 * 11 9 7 13 13 H 1.48494 * 109.47469 * 209.99852 * 11 9 7 14 14 H 1.48497 * 109.47037 * 330.00313 * 11 9 7 15 15 C 1.46898 * 110.99818 * 142.72646 * 5 4 2 16 16 C 1.50700 * 109.46987 * 293.95014 * 15 5 4 17 17 C 1.38234 * 119.61286 * 95.02452 * 16 15 5 18 18 C 1.38632 * 119.15821 * 179.74690 * 17 16 15 19 19 C 1.38677 * 118.42123 * 0.47194 * 18 17 16 20 20 C 1.38183 * 119.16004 * 359.50931 * 19 18 17 21 21 N 1.31846 * 119.62158 * 275.00227 * 16 15 5 22 22 C 1.50699 * 109.46550 * 240.00285 * 2 1 3 23 23 O 1.20830 * 120.00263 * 264.99622 * 22 2 1 24 24 O 1.34228 * 120.00093 * 85.00728 * 22 2 1 25 25 H 1.09005 * 109.47075 * 294.14334 * 1 2 3 26 26 H 1.09003 * 109.47273 * 54.13448 * 1 2 3 27 27 H 1.08998 * 109.47599 * 174.13667 * 1 2 3 28 28 H 0.96708 * 113.99522 * 179.97438 * 3 2 1 29 29 H 1.09000 * 109.46873 * 186.35271 * 4 2 1 30 30 H 1.08993 * 109.47275 * 66.35202 * 4 2 1 31 31 H 1.08999 * 109.46950 * 200.73163 * 6 5 4 32 32 H 1.09003 * 109.47053 * 320.73154 * 6 5 4 33 33 H 0.97003 * 120.00365 * 179.97438 * 10 9 7 34 34 H 1.09000 * 109.46874 * 173.95616 * 15 5 4 35 35 H 1.08995 * 109.47420 * 53.95255 * 15 5 4 36 36 H 1.07995 * 120.41886 * 359.95611 * 17 16 15 37 37 H 1.07996 * 120.78762 * 180.23668 * 18 17 16 38 38 H 1.07991 * 120.41837 * 179.78549 * 19 18 17 39 39 H 1.08003 * 119.61821 * 180.25363 * 20 19 18 40 40 H 0.96700 * 117.00033 * 180.02562 * 24 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 2.0400 -0.7214 1.2492 5 7 1.4292 -0.1231 2.4438 6 6 2.2896 0.9268 3.0053 7 6 2.0982 2.2029 2.2270 8 1 1.3403 2.2589 1.4596 9 6 2.8906 3.2990 2.4945 10 7 2.7233 4.4128 1.8156 11 14 4.2020 3.2020 3.8213 12 1 5.4787 2.7365 3.2223 13 1 4.3982 4.5455 4.4226 14 1 3.7717 2.2468 4.8736 15 6 1.1259 -1.1494 3.4500 16 6 0.0551 -2.0693 2.9224 17 6 0.4147 -3.2513 2.3024 18 6 -0.5782 -4.0930 1.8252 19 6 -1.9012 -3.7079 1.9813 20 6 -2.1843 -2.5114 2.6120 21 7 -1.2137 -1.7376 3.0578 22 6 2.0322 -0.7104 -1.2305 23 8 2.3196 -1.8827 -1.1764 24 8 2.1604 -0.0407 -2.3867 25 1 -0.3633 0.4204 0.9378 26 1 -0.3634 0.6021 -0.8328 27 1 -0.3634 -1.0222 -0.1050 28 1 2.9704 1.4236 0.0004 29 1 3.1240 -0.6239 1.3078 30 1 1.7725 -1.7765 1.1941 31 1 2.0241 1.0945 4.0491 32 1 3.3322 0.6150 2.9412 33 1 3.2806 5.1841 2.0041 34 1 0.7749 -0.6698 4.3638 35 1 2.0261 -1.7252 3.6646 36 1 1.4558 -3.5173 2.1942 37 1 -0.3271 -5.0245 1.3400 38 1 -2.7003 -4.3372 1.6186 39 1 -3.2122 -2.2063 2.7412 40 1 2.4860 -0.5389 -3.1489 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000833523969.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:05:52 Heat of formation + Delta-G solvation = -96.977398 kcal Electronic energy + Delta-G solvation = -25069.031490 eV Core-core repulsion = 21463.099789 eV Total energy + Delta-G solvation = -3605.931700 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.71724 -41.03990 -39.09857 -37.19024 -36.84914 -34.56962 -33.34964 -32.69244 -32.33256 -29.53364 -28.13277 -26.11742 -25.26079 -24.27969 -23.00158 -22.21429 -20.87709 -19.41394 -18.90402 -18.31869 -17.57587 -17.28725 -16.84087 -16.66865 -16.52519 -16.29532 -15.91930 -15.32961 -15.12114 -14.72824 -14.57088 -14.27901 -14.08666 -13.94988 -13.53336 -13.33786 -13.13369 -13.04255 -12.78788 -12.74315 -12.59158 -12.52660 -12.35266 -11.90971 -11.75425 -11.62050 -11.30321 -10.69059 -10.56934 -10.20563 -10.15283 -9.86723 -9.01094 -7.96764 -5.92465 0.23930 0.48041 1.04799 1.39272 1.45040 1.50933 1.96421 2.50302 2.86151 3.22196 3.38583 3.42423 3.52427 3.86225 3.88662 3.99697 4.09917 4.20915 4.27537 4.32521 4.46026 4.52191 4.60156 4.69008 4.83263 4.84421 4.88348 4.93128 4.97162 5.08626 5.30328 5.34488 5.38239 5.49559 5.76196 5.87857 6.13215 6.29685 6.78837 6.80804 7.05900 7.23646 7.34275 7.63411 9.16504 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.014148 B = 0.006548 C = 0.005101 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1978.537797 B = 4274.809484 C = 5487.518077 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C 0.149 3.851 3 O -0.502 6.502 4 C 0.050 3.950 5 N -0.515 5.515 6 C 0.167 3.833 7 C -0.473 4.473 8 H 0.094 0.906 9 C 0.012 3.988 10 N -0.944 5.944 11 Si 0.916 3.084 12 H -0.274 1.274 13 H -0.297 1.297 14 H -0.259 1.259 15 C 0.098 3.902 16 C 0.128 3.872 17 C -0.176 4.176 18 C -0.076 4.076 19 C -0.171 4.171 20 C 0.085 3.915 21 N -0.497 5.497 22 C 0.464 3.536 23 O -0.536 6.536 24 O -0.502 6.502 25 H 0.079 0.921 26 H 0.058 0.942 27 H 0.063 0.937 28 H 0.371 0.629 29 H 0.041 0.959 30 H 0.092 0.908 31 H 0.021 0.979 32 H -0.007 1.007 33 H 0.256 0.744 34 H 0.080 0.920 35 H 0.058 0.942 36 H 0.138 0.862 37 H 0.159 0.841 38 H 0.165 0.835 39 H 0.172 0.828 40 H 0.422 0.578 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.642 -18.601 -3.057 19.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.105 3.895 3 O -0.307 6.307 4 C -0.079 4.079 5 N -0.239 5.239 6 C 0.040 3.960 7 C -0.511 4.511 8 H 0.111 0.889 9 C -0.183 4.183 10 N -0.588 5.588 11 Si 0.743 3.257 12 H -0.200 1.200 13 H -0.224 1.224 14 H -0.183 1.183 15 C -0.030 4.030 16 C -0.010 4.010 17 C -0.196 4.196 18 C -0.102 4.102 19 C -0.191 4.191 20 C -0.072 4.072 21 N -0.207 5.207 22 C 0.306 3.694 23 O -0.427 6.427 24 O -0.314 6.314 25 H 0.098 0.902 26 H 0.077 0.923 27 H 0.082 0.918 28 H 0.220 0.780 29 H 0.059 0.941 30 H 0.110 0.890 31 H 0.039 0.961 32 H 0.010 0.990 33 H 0.065 0.935 34 H 0.099 0.901 35 H 0.076 0.924 36 H 0.156 0.844 37 H 0.177 0.823 38 H 0.182 0.818 39 H 0.189 0.811 40 H 0.284 0.716 Dipole moment (debyes) X Y Z Total from point charges -5.911 -17.380 -2.423 18.517 hybrid contribution 2.634 -0.968 -0.101 2.808 sum -3.276 -18.348 -2.524 18.808 Atomic orbital electron populations 1.21427 0.90055 1.01259 1.03918 1.21022 0.97149 0.84300 0.86998 1.87204 1.26579 1.21392 1.95567 1.22538 0.96637 0.98356 0.90371 1.61546 1.46643 1.10559 1.05132 1.20221 0.89692 0.90870 0.95183 1.21732 1.18217 0.93585 1.17603 0.88852 1.25517 0.99469 0.95474 0.97867 1.70047 1.41883 1.03450 1.43394 0.86207 0.80973 0.76997 0.81511 1.20017 1.22367 1.18348 1.21054 0.94660 0.92136 0.95147 1.21037 0.91706 0.92941 0.95300 1.22140 1.01631 0.95597 1.00239 1.21903 0.92636 0.99714 0.95955 1.22465 0.98088 0.98273 1.00255 1.23228 0.99055 0.91116 0.93829 1.67459 1.00901 1.33504 1.18787 1.24888 0.73102 0.85532 0.85870 1.90638 1.47742 1.18306 1.85987 1.84660 1.78414 1.47438 1.20910 0.90231 0.92331 0.91784 0.77960 0.94088 0.88967 0.96087 0.98971 0.93526 0.90112 0.92390 0.84384 0.82319 0.81770 0.81066 0.71644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.89 8.70 71.98 0.63 -3.26 16 2 C 0.15 5.39 1.12 -11.54 -0.01 5.37 16 3 O -0.50 -21.68 7.98 -135.70 -1.08 -22.76 16 4 C 0.05 1.75 3.83 86.30 0.33 2.09 16 5 N -0.52 -19.83 3.14 -905.38 -2.84 -22.67 16 6 C 0.17 7.47 3.85 85.56 0.33 7.80 16 7 C -0.47 -25.09 7.24 25.60 0.19 -24.91 16 8 H 0.09 5.54 5.75 -2.91 -0.02 5.52 16 9 C 0.01 0.69 5.47 84.65 0.46 1.15 16 10 N -0.94 -57.29 13.96 21.45 0.30 -56.99 16 11 Si 0.92 42.94 27.36 68.60 1.88 44.82 16 12 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 13 H -0.30 -14.23 7.11 99.48 0.71 -13.52 16 14 H -0.26 -11.49 6.71 99.48 0.67 -10.82 16 15 C 0.10 3.20 5.21 85.56 0.45 3.65 16 16 C 0.13 3.79 5.81 42.56 0.25 4.04 16 17 C -0.18 -4.24 8.09 22.36 0.18 -4.06 16 18 C -0.08 -1.45 10.18 22.47 0.23 -1.23 16 19 C -0.17 -3.07 10.11 22.36 0.23 -2.84 16 20 C 0.08 1.95 11.18 84.67 0.95 2.90 16 21 N -0.50 -15.22 10.27 -183.88 -1.89 -17.11 16 22 C 0.46 14.83 7.17 71.24 0.51 15.34 16 23 O -0.54 -17.90 16.72 21.95 0.37 -17.53 16 24 O -0.50 -13.67 13.18 -46.45 -0.61 -14.28 16 25 H 0.08 3.27 7.24 -2.38 -0.02 3.25 16 26 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 27 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 28 H 0.37 15.52 8.66 -74.05 -0.64 14.88 16 29 H 0.04 1.47 7.34 -2.39 -0.02 1.46 16 30 H 0.09 2.95 4.46 -2.39 -0.01 2.94 16 31 H 0.02 0.97 7.10 -2.39 -0.02 0.95 16 32 H -0.01 -0.32 6.58 -2.39 -0.02 -0.34 16 33 H 0.26 14.85 8.31 -92.71 -0.77 14.08 16 34 H 0.08 2.78 7.80 -2.39 -0.02 2.76 16 35 H 0.06 1.66 8.02 -2.39 -0.02 1.64 16 36 H 0.14 3.01 7.56 -2.91 -0.02 2.98 16 37 H 0.16 2.05 8.06 -2.91 -0.02 2.03 16 38 H 0.16 1.75 8.06 -2.92 -0.02 1.73 16 39 H 0.17 3.02 8.06 -2.91 -0.02 3.00 16 40 H 0.42 6.80 9.10 -74.06 -0.67 6.13 16 Total: -1.00 -70.05 329.86 0.56 -69.49 By element: Atomic # 1 Polarization: 31.27 SS G_CDS: -0.27 Total: 31.00 kcal Atomic # 6 Polarization: 1.33 SS G_CDS: 4.71 Total: 6.04 kcal Atomic # 7 Polarization: -92.34 SS G_CDS: -4.43 Total: -96.77 kcal Atomic # 8 Polarization: -53.24 SS G_CDS: -1.33 Total: -54.57 kcal Atomic # 14 Polarization: 42.94 SS G_CDS: 1.88 Total: 44.82 kcal Total: -70.05 0.56 -69.49 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000833523969.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.490 kcal (2) G-P(sol) polarization free energy of solvation -70.047 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.537 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.487 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.977 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds