Wall clock time and date at job start Tue Mar 31 2020 07:05:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.42902 * 109.47486 * 2 1 4 4 C 1.53000 * 109.47082 * 239.99713 * 2 1 3 5 5 N 1.46896 * 109.47271 * 53.54889 * 4 2 1 6 6 C 1.46897 * 110.99939 * 93.26976 * 5 4 2 7 7 C 1.50697 * 109.47514 * 277.96078 * 6 5 4 8 8 H 1.07997 * 120.00290 * 354.43982 * 7 6 5 9 9 C 1.37886 * 119.99927 * 174.44072 * 7 6 5 10 10 N 1.31515 * 119.99920 * 0.02562 * 9 7 6 11 11 Si 1.86801 * 119.99758 * 180.02562 * 9 7 6 12 12 H 1.48506 * 109.47045 * 359.97438 * 11 9 7 13 13 H 1.48494 * 109.47085 * 120.00127 * 11 9 7 14 14 H 1.48499 * 109.46763 * 240.00026 * 11 9 7 15 15 C 1.46896 * 111.00401 * 217.23007 * 5 4 2 16 16 C 1.50698 * 109.47309 * 66.04150 * 15 5 4 17 17 C 1.38230 * 119.61644 * 94.97628 * 16 15 5 18 18 C 1.38627 * 119.15859 * 179.79043 * 17 16 15 19 19 C 1.38674 * 118.42217 * 0.48008 * 18 17 16 20 20 C 1.38179 * 119.16245 * 359.50349 * 19 18 17 21 21 N 1.31855 * 119.62001 * 275.00951 * 16 15 5 22 22 C 1.50700 * 109.47017 * 119.99781 * 2 1 3 23 23 O 1.20825 * 119.99986 * 94.99829 * 22 2 1 24 24 O 1.34228 * 120.00275 * 274.99709 * 22 2 1 25 25 H 1.08995 * 109.46984 * 180.02562 * 1 2 3 26 26 H 1.08995 * 109.46970 * 300.00269 * 1 2 3 27 27 H 1.08997 * 109.46771 * 59.99875 * 1 2 3 28 28 H 0.96698 * 114.00044 * 180.02562 * 3 2 1 29 29 H 1.09002 * 109.47061 * 293.54910 * 4 2 1 30 30 H 1.09001 * 109.47182 * 173.54937 * 4 2 1 31 31 H 1.09000 * 109.47100 * 37.96376 * 6 5 4 32 32 H 1.09007 * 109.47119 * 157.96110 * 6 5 4 33 33 H 0.97003 * 119.99434 * 180.02562 * 10 9 7 34 34 H 1.09005 * 109.47078 * 306.04342 * 15 5 4 35 35 H 1.08994 * 109.47633 * 186.04721 * 15 5 4 36 36 H 1.07999 * 120.41870 * 0.02562 * 17 16 15 37 37 H 1.08001 * 120.78869 * 180.23641 * 18 17 16 38 38 H 1.08005 * 120.41525 * 179.78030 * 19 18 17 39 39 H 1.07999 * 119.61872 * 180.25358 * 20 19 18 40 40 H 0.96702 * 117.00327 * 179.97438 * 24 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0065 1.3473 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 1.4275 -0.1246 -2.4436 6 6 2.2855 0.9269 -3.0057 7 6 2.0680 2.2113 -2.2481 8 1 1.2999 2.2683 -1.4910 9 6 2.8497 3.3138 -2.5214 10 7 3.7847 3.2446 -3.4437 11 14 2.5806 4.9056 -1.5817 12 1 1.4759 4.7237 -0.6060 13 1 3.8253 5.2701 -0.8587 14 1 2.2260 5.9886 -2.5339 15 6 1.1257 -1.1517 -3.4495 16 6 0.0572 -2.0737 -2.9212 17 6 -1.2670 -1.8384 -3.2403 18 6 -2.2417 -2.6952 -2.7527 19 6 -1.8474 -3.7554 -1.9506 20 6 -0.5045 -3.9277 -1.6745 21 7 0.3962 -3.0952 -2.1594 22 6 2.0323 -0.7104 1.2305 23 8 2.3197 -1.8827 1.1763 24 8 2.1606 -0.0407 2.3867 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 2.9704 1.4236 -0.0004 29 1 1.7740 -1.7769 -1.1933 30 1 3.1239 -0.6224 -1.3088 31 1 3.3301 0.6274 -2.9209 32 1 2.0348 1.0777 -4.0558 33 1 4.3348 4.0201 -3.6357 34 1 2.0271 -1.7257 -3.6645 35 1 0.7734 -0.6731 -4.3632 36 1 -1.5384 -1.0000 -3.8646 37 1 -3.2839 -2.5383 -2.9887 38 1 -2.5802 -4.4405 -1.5506 39 1 -0.1888 -4.7533 -1.0540 40 1 2.4863 -0.5390 3.1489 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000833523970.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:05:55 Heat of formation + Delta-G solvation = -79.579981 kcal Electronic energy + Delta-G solvation = -25053.458510 eV Core-core repulsion = 21448.281218 eV Total energy + Delta-G solvation = -3605.177292 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.35294 -39.92734 -37.52773 -35.85845 -35.29324 -32.72506 -32.21790 -31.52686 -30.64874 -27.31801 -26.61947 -24.59414 -23.78583 -23.28104 -21.78320 -20.83024 -19.39747 -18.03299 -17.11179 -16.63725 -16.34572 -16.00715 -15.50018 -15.24059 -15.01812 -14.79337 -14.36707 -13.77357 -13.62861 -13.45655 -13.19307 -12.92976 -12.67267 -12.22127 -11.96479 -11.72911 -11.63665 -11.56740 -11.34671 -11.27563 -11.07794 -10.86264 -10.54826 -10.36139 -10.11784 -9.87826 -9.68204 -9.49097 -9.07817 -8.81856 -8.54140 -8.26452 -7.36320 -5.89368 -3.83398 1.27625 1.43777 2.44225 3.26291 3.40183 3.48889 3.58866 3.94356 4.48628 4.57920 4.79850 4.90583 4.95467 5.09339 5.20846 5.30914 5.35906 5.45994 5.53753 5.63462 5.71006 5.84322 5.92411 6.09242 6.14138 6.25750 6.29776 6.37888 6.41346 6.46185 6.68136 6.80929 6.87087 7.13036 7.29608 7.94545 8.02889 8.11234 8.19706 8.23486 8.45260 8.58978 9.34187 9.76731 11.21548 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.014933 B = 0.006297 C = 0.005036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1874.614552 B = 4445.570505 C = 5558.927382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.160 3.840 3 O -0.496 6.496 4 C 0.039 3.961 5 N -0.518 5.518 6 C 0.188 3.812 7 C -0.478 4.478 8 H 0.098 0.902 9 C 0.046 3.954 10 N -0.910 5.910 11 Si 0.894 3.106 12 H -0.268 1.268 13 H -0.290 1.290 14 H -0.292 1.292 15 C 0.099 3.901 16 C 0.148 3.852 17 C -0.153 4.153 18 C -0.079 4.079 19 C -0.186 4.186 20 C 0.098 3.902 21 N -0.478 5.478 22 C 0.450 3.550 23 O -0.518 6.518 24 O -0.507 6.507 25 H 0.053 0.947 26 H 0.054 0.946 27 H 0.100 0.900 28 H 0.374 0.626 29 H 0.099 0.901 30 H 0.042 0.958 31 H -0.001 1.001 32 H 0.024 0.976 33 H 0.256 0.744 34 H 0.044 0.956 35 H 0.089 0.911 36 H 0.136 0.864 37 H 0.129 0.871 38 H 0.128 0.872 39 H 0.149 0.851 40 H 0.397 0.603 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.973 -11.336 4.862 15.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.116 3.884 3 O -0.302 6.302 4 C -0.091 4.091 5 N -0.243 5.243 6 C 0.064 3.936 7 C -0.516 4.516 8 H 0.116 0.884 9 C -0.153 4.153 10 N -0.552 5.552 11 Si 0.723 3.277 12 H -0.192 1.192 13 H -0.217 1.217 14 H -0.219 1.219 15 C -0.029 4.029 16 C 0.011 3.989 17 C -0.173 4.173 18 C -0.105 4.105 19 C -0.206 4.206 20 C -0.059 4.059 21 N -0.187 5.187 22 C 0.291 3.709 23 O -0.406 6.406 24 O -0.317 6.317 25 H 0.072 0.928 26 H 0.073 0.927 27 H 0.118 0.882 28 H 0.223 0.777 29 H 0.117 0.883 30 H 0.061 0.939 31 H 0.017 0.983 32 H 0.042 0.958 33 H 0.065 0.935 34 H 0.062 0.938 35 H 0.107 0.893 36 H 0.154 0.846 37 H 0.147 0.853 38 H 0.146 0.854 39 H 0.167 0.833 40 H 0.254 0.746 Dipole moment (debyes) X Y Z Total from point charges -9.095 -11.089 4.738 15.104 hybrid contribution 0.734 0.129 0.636 0.980 sum -8.361 -10.960 5.374 14.796 Atomic orbital electron populations 1.21544 0.90471 1.01346 1.04251 1.20957 0.96678 0.84525 0.86275 1.87040 1.26833 1.20807 1.95558 1.22673 0.97000 0.99195 0.90184 1.61948 1.48275 1.09739 1.04329 1.20006 0.89440 0.88868 0.95288 1.21716 1.17790 0.93456 1.18655 0.88395 1.24996 0.95713 0.98888 0.95749 1.70000 1.22106 1.30139 1.32981 0.86490 0.77984 0.83478 0.79786 1.19242 1.21709 1.21853 1.21072 0.94683 0.91702 0.95488 1.21388 0.93666 0.91855 0.92040 1.21982 0.93402 1.00203 1.01748 1.21540 0.99776 0.93826 0.95342 1.22039 0.97638 0.99812 1.01079 1.22686 0.89323 0.97158 0.96775 1.67516 1.38576 1.03724 1.08930 1.25454 0.73657 0.86212 0.85539 1.90674 1.46485 1.17953 1.85468 1.84709 1.78949 1.47349 1.20675 0.92831 0.92706 0.88151 0.77689 0.88304 0.93944 0.98281 0.95818 0.93459 0.93814 0.89299 0.84625 0.85261 0.85429 0.83348 0.74593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.06 8.59 37.16 0.32 -1.74 16 2 C 0.16 2.95 1.12 -91.77 -0.10 2.84 16 3 O -0.50 -10.08 8.07 -49.12 -0.40 -10.48 16 4 C 0.04 0.75 3.84 -3.83 -0.01 0.74 16 5 N -0.52 -10.31 3.23 -237.53 -0.77 -11.07 16 6 C 0.19 4.52 4.80 -4.98 -0.02 4.49 16 7 C -0.48 -12.26 6.72 -34.44 -0.23 -12.49 16 8 H 0.10 2.55 5.66 -52.49 -0.30 2.25 16 9 C 0.05 1.23 5.46 -17.82 -0.10 1.13 16 10 N -0.91 -26.17 13.29 55.43 0.74 -25.44 16 11 Si 0.89 21.46 29.54 -169.99 -5.02 16.44 16 12 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 13 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 14 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 15 C 0.10 1.72 5.18 -4.98 -0.03 1.69 16 16 C 0.15 2.32 5.85 -82.59 -0.48 1.83 16 17 C -0.15 -2.03 9.72 -39.44 -0.38 -2.42 16 18 C -0.08 -0.88 10.18 -39.28 -0.40 -1.28 16 19 C -0.19 -2.03 10.11 -39.44 -0.40 -2.43 16 20 C 0.10 1.27 11.18 -17.55 -0.20 1.07 16 21 N -0.48 -7.59 8.34 -9.47 -0.08 -7.67 16 22 C 0.45 7.78 7.17 36.01 0.26 8.04 16 23 O -0.52 -9.84 16.71 -18.75 -0.31 -10.16 16 24 O -0.51 -7.36 13.18 -44.42 -0.59 -7.94 16 25 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 26 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 27 H 0.10 1.88 7.44 -51.93 -0.39 1.49 16 28 H 0.37 7.30 8.72 45.56 0.40 7.70 16 29 H 0.10 1.93 4.85 -51.93 -0.25 1.67 16 30 H 0.04 0.89 7.32 -51.93 -0.38 0.51 16 31 H 0.00 -0.02 7.44 -51.93 -0.39 -0.40 16 32 H 0.02 0.60 7.62 -51.92 -0.40 0.21 16 33 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 34 H 0.04 0.78 8.12 -51.93 -0.42 0.36 16 35 H 0.09 1.45 7.69 -51.93 -0.40 1.05 16 36 H 0.14 1.64 8.06 -52.49 -0.42 1.22 16 37 H 0.13 1.08 8.06 -52.49 -0.42 0.66 16 38 H 0.13 1.03 8.06 -52.48 -0.42 0.60 16 39 H 0.15 1.60 8.06 -52.49 -0.42 1.18 16 40 H 0.40 3.77 9.10 45.56 0.41 4.18 16 LS Contribution 334.39 15.07 5.04 5.04 Total: -1.00 -31.78 334.39 -6.94 -38.72 By element: Atomic # 1 Polarization: 14.83 SS G_CDS: -3.78 Total: 11.06 kcal Atomic # 6 Polarization: 3.27 SS G_CDS: -1.78 Total: 1.49 kcal Atomic # 7 Polarization: -44.07 SS G_CDS: -0.11 Total: -44.17 kcal Atomic # 8 Polarization: -27.28 SS G_CDS: -1.29 Total: -28.57 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -31.78 -6.94 -38.72 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000833523970.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.857 kcal (2) G-P(sol) polarization free energy of solvation -31.779 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.636 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.723 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds