Wall clock time and date at job start Tue Mar 31 2020 07:05:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.42902 * 109.47486 * 2 1 4 4 C 1.53000 * 109.47082 * 239.99713 * 2 1 3 5 5 N 1.46896 * 109.47271 * 53.54889 * 4 2 1 6 6 C 1.46897 * 110.99939 * 93.26976 * 5 4 2 7 7 C 1.50697 * 109.47514 * 277.96078 * 6 5 4 8 8 H 1.07997 * 120.00290 * 354.43982 * 7 6 5 9 9 C 1.37886 * 119.99927 * 174.44072 * 7 6 5 10 10 N 1.31515 * 119.99920 * 0.02562 * 9 7 6 11 11 Si 1.86801 * 119.99758 * 180.02562 * 9 7 6 12 12 H 1.48506 * 109.47045 * 359.97438 * 11 9 7 13 13 H 1.48494 * 109.47085 * 120.00127 * 11 9 7 14 14 H 1.48499 * 109.46763 * 240.00026 * 11 9 7 15 15 C 1.46896 * 111.00401 * 217.23007 * 5 4 2 16 16 C 1.50698 * 109.47309 * 66.04150 * 15 5 4 17 17 C 1.38230 * 119.61644 * 94.97628 * 16 15 5 18 18 C 1.38627 * 119.15859 * 179.79043 * 17 16 15 19 19 C 1.38674 * 118.42217 * 0.48008 * 18 17 16 20 20 C 1.38179 * 119.16245 * 359.50349 * 19 18 17 21 21 N 1.31855 * 119.62001 * 275.00951 * 16 15 5 22 22 C 1.50700 * 109.47017 * 119.99781 * 2 1 3 23 23 O 1.20825 * 119.99986 * 94.99829 * 22 2 1 24 24 O 1.34228 * 120.00275 * 274.99709 * 22 2 1 25 25 H 1.08995 * 109.46984 * 180.02562 * 1 2 3 26 26 H 1.08995 * 109.46970 * 300.00269 * 1 2 3 27 27 H 1.08997 * 109.46771 * 59.99875 * 1 2 3 28 28 H 0.96698 * 114.00044 * 180.02562 * 3 2 1 29 29 H 1.09002 * 109.47061 * 293.54910 * 4 2 1 30 30 H 1.09001 * 109.47182 * 173.54937 * 4 2 1 31 31 H 1.09000 * 109.47100 * 37.96376 * 6 5 4 32 32 H 1.09007 * 109.47119 * 157.96110 * 6 5 4 33 33 H 0.97003 * 119.99434 * 180.02562 * 10 9 7 34 34 H 1.09005 * 109.47078 * 306.04342 * 15 5 4 35 35 H 1.08994 * 109.47633 * 186.04721 * 15 5 4 36 36 H 1.07999 * 120.41870 * 0.02562 * 17 16 15 37 37 H 1.08001 * 120.78869 * 180.23641 * 18 17 16 38 38 H 1.08005 * 120.41525 * 179.78030 * 19 18 17 39 39 H 1.07999 * 119.61872 * 180.25358 * 20 19 18 40 40 H 0.96702 * 117.00327 * 179.97438 * 24 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0065 1.3473 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 1.4275 -0.1246 -2.4436 6 6 2.2855 0.9269 -3.0057 7 6 2.0680 2.2113 -2.2481 8 1 1.2999 2.2683 -1.4910 9 6 2.8497 3.3138 -2.5214 10 7 3.7847 3.2446 -3.4437 11 14 2.5806 4.9056 -1.5817 12 1 1.4759 4.7237 -0.6060 13 1 3.8253 5.2701 -0.8587 14 1 2.2260 5.9886 -2.5339 15 6 1.1257 -1.1517 -3.4495 16 6 0.0572 -2.0737 -2.9212 17 6 -1.2670 -1.8384 -3.2403 18 6 -2.2417 -2.6952 -2.7527 19 6 -1.8474 -3.7554 -1.9506 20 6 -0.5045 -3.9277 -1.6745 21 7 0.3962 -3.0952 -2.1594 22 6 2.0323 -0.7104 1.2305 23 8 2.3197 -1.8827 1.1763 24 8 2.1606 -0.0407 2.3867 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 2.9704 1.4236 -0.0004 29 1 1.7740 -1.7769 -1.1933 30 1 3.1239 -0.6224 -1.3088 31 1 3.3301 0.6274 -2.9209 32 1 2.0348 1.0777 -4.0558 33 1 4.3348 4.0201 -3.6357 34 1 2.0271 -1.7257 -3.6645 35 1 0.7734 -0.6731 -4.3632 36 1 -1.5384 -1.0000 -3.8646 37 1 -3.2839 -2.5383 -2.9887 38 1 -2.5802 -4.4405 -1.5506 39 1 -0.1888 -4.7533 -1.0540 40 1 2.4863 -0.5390 3.1489 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000833523970.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:05:54 Heat of formation + Delta-G solvation = -102.479197 kcal Electronic energy + Delta-G solvation = -25054.451494 eV Core-core repulsion = 21448.281218 eV Total energy + Delta-G solvation = -3606.170276 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.70310 -41.03343 -39.03580 -37.19211 -36.82491 -34.64743 -33.26813 -32.80058 -32.14746 -29.08977 -28.04131 -26.07952 -25.39313 -24.27114 -23.25231 -22.21358 -20.93171 -19.42137 -18.63511 -18.19428 -17.58072 -17.18303 -16.89918 -16.65998 -16.39457 -16.24637 -16.07547 -15.23773 -15.15144 -14.74294 -14.41274 -14.23692 -14.08617 -13.74376 -13.40155 -13.31649 -13.13844 -13.04476 -12.76815 -12.67637 -12.59699 -12.51240 -12.31724 -12.08133 -11.70809 -11.62492 -11.22954 -10.67310 -10.46083 -10.27369 -10.17494 -9.85016 -9.06203 -7.98351 -5.97051 0.27612 0.49252 1.05736 1.49099 1.53216 1.67935 1.95858 2.56872 2.88878 3.21314 3.37529 3.45269 3.64372 3.86390 3.89129 4.01000 4.12513 4.27942 4.32920 4.36004 4.55009 4.61867 4.64076 4.78949 4.87563 4.90370 4.92948 4.97555 5.25679 5.26086 5.34943 5.36784 5.40405 5.50033 5.90947 6.01148 6.21429 6.29582 6.63540 6.74168 7.02091 7.18852 7.25332 7.66525 9.13001 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.014933 B = 0.006297 C = 0.005036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1874.614552 B = 4445.570505 C = 5558.927382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C 0.156 3.844 3 O -0.510 6.510 4 C 0.046 3.954 5 N -0.511 5.511 6 C 0.203 3.797 7 C -0.466 4.466 8 H 0.100 0.900 9 C -0.003 4.003 10 N -0.949 5.949 11 Si 0.956 3.044 12 H -0.262 1.262 13 H -0.290 1.290 14 H -0.295 1.295 15 C 0.099 3.901 16 C 0.125 3.875 17 C -0.159 4.159 18 C -0.073 4.073 19 C -0.170 4.170 20 C 0.082 3.918 21 N -0.510 5.510 22 C 0.461 3.539 23 O -0.537 6.537 24 O -0.500 6.500 25 H 0.060 0.940 26 H 0.067 0.933 27 H 0.085 0.915 28 H 0.374 0.626 29 H 0.102 0.898 30 H 0.018 0.982 31 H -0.032 1.032 32 H 0.005 0.995 33 H 0.254 0.746 34 H 0.029 0.971 35 H 0.093 0.907 36 H 0.142 0.858 37 H 0.165 0.835 38 H 0.165 0.835 39 H 0.166 0.834 40 H 0.422 0.578 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.509 -12.083 6.509 17.911 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.112 3.888 3 O -0.316 6.316 4 C -0.083 4.083 5 N -0.235 5.235 6 C 0.077 3.923 7 C -0.504 4.504 8 H 0.118 0.882 9 C -0.199 4.199 10 N -0.593 5.593 11 Si 0.784 3.216 12 H -0.186 1.186 13 H -0.217 1.217 14 H -0.222 1.222 15 C -0.029 4.029 16 C -0.012 4.012 17 C -0.179 4.179 18 C -0.099 4.099 19 C -0.189 4.189 20 C -0.075 4.075 21 N -0.221 5.221 22 C 0.303 3.697 23 O -0.427 6.427 24 O -0.313 6.313 25 H 0.079 0.921 26 H 0.086 0.914 27 H 0.104 0.896 28 H 0.223 0.777 29 H 0.120 0.880 30 H 0.036 0.964 31 H -0.014 1.014 32 H 0.023 0.977 33 H 0.063 0.937 34 H 0.047 0.953 35 H 0.111 0.889 36 H 0.160 0.840 37 H 0.182 0.818 38 H 0.183 0.817 39 H 0.184 0.816 40 H 0.283 0.717 Dipole moment (debyes) X Y Z Total from point charges -11.646 -11.846 6.419 17.809 hybrid contribution 1.468 0.223 0.172 1.494 sum -10.179 -11.623 6.591 16.797 Atomic orbital electron populations 1.21442 0.89266 1.01757 1.04074 1.20967 0.97551 0.83630 0.86604 1.86959 1.26897 1.22028 1.95717 1.22595 0.95486 0.99584 0.90660 1.61888 1.46526 1.10141 1.04946 1.19684 0.88339 0.90012 0.94265 1.21908 1.16869 0.93735 1.17931 0.88223 1.25686 0.95717 1.01851 0.96599 1.70127 1.23436 1.30867 1.34858 0.85517 0.77786 0.79866 0.78465 1.18640 1.21670 1.22151 1.21066 0.95191 0.91425 0.95230 1.21001 0.93852 0.92352 0.93969 1.22107 0.92860 1.01004 1.01914 1.21950 1.00918 0.92840 0.94206 1.22437 0.97353 0.99670 0.99482 1.23106 0.90186 0.97217 0.97000 1.67375 1.40347 1.04524 1.09844 1.24917 0.73250 0.85614 0.85941 1.90676 1.47431 1.18681 1.85922 1.84627 1.78531 1.47315 1.20778 0.92071 0.91431 0.89643 0.77663 0.87962 0.96353 1.01442 0.97716 0.93695 0.95298 0.88880 0.83977 0.81789 0.81734 0.81640 0.71672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.58 8.59 71.98 0.62 -2.97 16 2 C 0.16 5.69 1.12 -11.54 -0.01 5.68 16 3 O -0.51 -20.54 8.07 -135.70 -1.09 -21.64 16 4 C 0.05 1.83 3.84 86.30 0.33 2.17 16 5 N -0.51 -20.96 3.23 -905.39 -2.92 -23.88 16 6 C 0.20 10.14 4.80 85.56 0.41 10.55 16 7 C -0.47 -24.31 6.72 25.60 0.17 -24.13 16 8 H 0.10 5.17 5.66 -2.91 -0.02 5.15 16 9 C 0.00 -0.18 5.46 84.66 0.46 0.28 16 10 N -0.95 -55.98 13.29 21.45 0.28 -55.70 16 11 Si 0.96 44.41 29.54 68.60 2.03 46.44 16 12 H -0.26 -11.85 7.11 99.48 0.71 -11.14 16 13 H -0.29 -13.38 7.11 99.48 0.71 -12.68 16 14 H -0.29 -13.76 7.11 99.48 0.71 -13.05 16 15 C 0.10 3.57 5.18 85.56 0.44 4.02 16 16 C 0.13 3.88 5.85 42.55 0.25 4.13 16 17 C -0.16 -3.95 9.72 22.36 0.22 -3.73 16 18 C -0.07 -1.37 10.18 22.47 0.23 -1.14 16 19 C -0.17 -3.06 10.11 22.36 0.23 -2.83 16 20 C 0.08 1.95 11.18 84.67 0.95 2.89 16 21 N -0.51 -15.93 8.34 -183.89 -1.53 -17.46 16 22 C 0.46 15.34 7.17 71.24 0.51 15.85 16 23 O -0.54 -19.86 16.71 21.97 0.37 -19.49 16 24 O -0.50 -13.33 13.18 -46.45 -0.61 -13.95 16 25 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 26 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 27 H 0.08 3.11 7.44 -2.39 -0.02 3.09 16 28 H 0.37 14.79 8.72 -74.06 -0.65 14.14 16 29 H 0.10 4.06 4.85 -2.39 -0.01 4.05 16 30 H 0.02 0.81 7.32 -2.39 -0.02 0.79 16 31 H -0.03 -1.80 7.44 -2.39 -0.02 -1.82 16 32 H 0.00 0.26 7.62 -2.38 -0.02 0.24 16 33 H 0.25 14.43 8.31 -92.71 -0.77 13.66 16 34 H 0.03 1.10 8.12 -2.38 -0.02 1.08 16 35 H 0.09 3.17 7.69 -2.39 -0.02 3.16 16 36 H 0.14 3.25 8.06 -2.91 -0.02 3.23 16 37 H 0.16 1.93 8.06 -2.91 -0.02 1.90 16 38 H 0.17 1.75 8.06 -2.91 -0.02 1.73 16 39 H 0.17 3.18 8.06 -2.91 -0.02 3.16 16 40 H 0.42 6.79 9.10 -74.06 -0.67 6.11 16 Total: -1.00 -69.28 334.39 1.08 -68.21 By element: Atomic # 1 Polarization: 26.95 SS G_CDS: -0.24 Total: 26.71 kcal Atomic # 6 Polarization: 5.95 SS G_CDS: 4.80 Total: 10.76 kcal Atomic # 7 Polarization: -92.87 SS G_CDS: -4.17 Total: -97.04 kcal Atomic # 8 Polarization: -53.73 SS G_CDS: -1.34 Total: -55.07 kcal Atomic # 14 Polarization: 44.41 SS G_CDS: 2.03 Total: 46.44 kcal Total: -69.28 1.08 -68.21 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000833523970.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.274 kcal (2) G-P(sol) polarization free energy of solvation -69.283 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.206 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.479 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds