Wall clock time and date at job start Tue Mar 31 2020 06:43:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.46798 * 2 1 4 4 C 1.50692 * 109.47239 * 240.00193 * 2 1 3 5 5 H 1.08004 * 120.00058 * 239.99879 * 4 2 1 6 6 C 1.37879 * 120.00172 * 59.99753 * 4 2 1 7 7 N 1.31506 * 119.99913 * 0.02562 * 6 4 2 8 8 Si 1.86802 * 119.99709 * 179.97438 * 6 4 2 9 9 H 1.48509 * 109.46994 * 90.00346 * 8 6 4 10 10 H 1.48504 * 109.46919 * 209.99932 * 8 6 4 11 11 H 1.48494 * 109.47546 * 329.99868 * 8 6 4 12 12 C 1.53004 * 109.47191 * 119.99674 * 2 1 3 13 13 N 1.46895 * 109.47035 * 300.00419 * 12 2 1 14 14 C 1.46906 * 110.99789 * 179.97438 * 13 12 2 15 15 C 1.50703 * 109.47109 * 179.97438 * 14 13 12 16 16 C 1.38162 * 120.02790 * 104.72688 * 15 14 13 17 17 C 1.38240 * 120.05525 * 179.79400 * 16 15 14 18 18 N 1.48014 * 119.94447 * 180.20961 * 17 16 15 19 19 O 1.21797 * 119.99863 * 180.24874 * 18 17 16 20 20 O 1.21791 * 119.99867 * 0.24990 * 18 17 16 21 21 C 1.38289 * 120.11432 * 0.45773 * 17 16 15 22 22 C 1.38118 * 120.05220 * 359.79428 * 21 17 16 23 23 C 1.38714 * 120.02678 * 284.99988 * 15 14 13 24 24 O 1.35892 * 120.05649 * 0.02562 * 23 15 14 25 25 H 1.09003 * 109.47221 * 299.99569 * 1 2 3 26 26 H 1.08997 * 109.47170 * 60.00348 * 1 2 3 27 27 H 1.09005 * 109.46721 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47612 * 180.02562 * 3 2 1 29 29 H 1.08997 * 109.47506 * 300.00323 * 3 2 1 30 30 H 1.09004 * 109.47572 * 59.99937 * 3 2 1 31 31 H 0.96998 * 119.99843 * 180.02562 * 7 6 4 32 32 H 1.08996 * 109.46863 * 180.02562 * 12 2 1 33 33 H 1.09002 * 109.46661 * 60.00438 * 12 2 1 34 34 H 1.00902 * 111.00273 * 303.95364 * 13 12 2 35 35 H 1.08992 * 109.47459 * 299.99826 * 14 13 12 36 36 H 1.09004 * 109.47040 * 59.99976 * 14 13 12 37 37 H 1.08004 * 119.97309 * 0.02562 * 16 15 14 38 38 H 1.08000 * 119.97502 * 179.76800 * 21 17 16 39 39 H 1.08001 * 120.02960 * 179.97438 * 22 21 17 40 40 H 0.96703 * 114.00643 * 89.99555 * 24 23 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0323 -0.7103 -1.2304 5 1 2.6533 -1.5884 -1.1313 6 6 1.6993 -0.2393 -2.4827 7 7 0.9436 0.8302 -2.6034 8 14 2.3226 -1.1195 -4.0079 9 1 1.3449 -2.1616 -4.4123 10 1 2.4874 -0.1401 -5.1120 11 1 3.6310 -1.7564 -3.7119 12 6 2.0400 -0.7212 1.2493 13 7 1.5503 -0.0287 2.4487 14 6 2.0209 -0.6951 3.6704 15 6 1.5002 0.0422 4.8772 16 6 0.4568 -0.4858 5.6129 17 6 -0.0184 0.1880 6.7225 18 7 -1.1333 -0.3821 7.5117 19 8 -1.5558 0.2129 8.4869 20 8 -1.6282 -1.4462 7.1860 21 6 0.5426 1.3963 7.0935 22 6 1.5825 1.9309 6.3583 23 6 2.0645 1.2542 5.2469 24 8 3.0868 1.7786 4.5212 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 3.1299 1.4427 -0.0005 29 1 1.6766 1.9564 -0.8899 30 1 1.6766 1.9564 0.8900 31 1 0.7089 1.1613 -3.4844 32 1 3.1300 -0.7208 1.2495 33 1 1.6767 -1.7489 1.2493 34 1 1.8197 0.9437 2.4401 35 1 1.6571 -1.7224 3.6870 36 1 3.1108 -0.6953 3.6874 37 1 0.0145 -1.4275 5.3232 38 1 0.1671 1.9226 7.9586 39 1 2.0201 2.8747 6.6481 40 1 2.8017 2.3566 3.8004 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000839162845.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:43:06 Heat of formation + Delta-G solvation = -24.921053 kcal Electronic energy + Delta-G solvation = -23467.847359 eV Core-core repulsion = 19865.040256 eV Total energy + Delta-G solvation = -3602.807103 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.30344 -40.47216 -37.25960 -37.08103 -36.67255 -34.49871 -32.07414 -31.32269 -30.38077 -26.40476 -26.06946 -25.69697 -25.28148 -23.38174 -23.02350 -21.78207 -19.22519 -18.86179 -18.77094 -18.52133 -17.64038 -16.47546 -16.11420 -16.02647 -15.44517 -14.85240 -14.64120 -14.19910 -13.96221 -13.55513 -13.08156 -12.91582 -12.51938 -12.46928 -12.32132 -11.98372 -11.70137 -11.33672 -11.24998 -11.20915 -11.12831 -10.96325 -10.74124 -10.66790 -10.30423 -10.15554 -9.67748 -9.53670 -9.47632 -9.18728 -8.73996 -8.37960 -7.96826 -5.99869 -4.10554 -0.38105 0.61387 1.10230 1.25802 2.82928 3.26354 3.33687 3.36102 3.59993 4.03009 4.14887 4.37065 4.45938 4.60827 4.75396 4.89853 5.18191 5.26224 5.27114 5.36972 5.55003 5.63920 5.78360 5.95564 6.16200 6.22993 6.24838 6.55622 6.74164 6.89997 7.02493 7.07677 7.23368 7.30235 7.51279 7.51940 7.63770 7.68777 7.73177 8.08730 8.22974 8.45199 8.90527 9.55155 11.00761 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.025811 B = 0.003235 C = 0.003052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1084.566350 B = 8652.925107 C = 9172.052504 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.069 3.931 3 C -0.132 4.132 4 C -0.509 4.509 5 H 0.053 0.947 6 C 0.066 3.934 7 N -0.884 5.884 8 Si 0.889 3.111 9 H -0.281 1.281 10 H -0.287 1.287 11 H -0.276 1.276 12 C 0.074 3.926 13 N -0.678 5.678 14 C 0.095 3.905 15 C -0.095 4.095 16 C -0.022 4.022 17 C -0.057 4.057 18 N 0.032 4.968 19 O -0.167 6.167 20 O -0.159 6.159 21 C -0.044 4.044 22 C -0.146 4.146 23 C 0.170 3.830 24 O -0.490 6.490 25 H 0.018 0.982 26 H 0.075 0.925 27 H 0.019 0.981 28 H 0.020 0.980 29 H 0.084 0.916 30 H 0.007 0.993 31 H 0.259 0.741 32 H 0.018 0.982 33 H 0.060 0.940 34 H 0.332 0.668 35 H 0.085 0.915 36 H 0.049 0.951 37 H 0.158 0.842 38 H 0.155 0.845 39 H 0.152 0.848 40 H 0.406 0.594 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.885 3.169 16.622 17.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.069 3.931 3 C -0.190 4.190 4 C -0.548 4.548 5 H 0.071 0.929 6 C -0.135 4.135 7 N -0.523 5.523 8 Si 0.718 3.282 9 H -0.207 1.207 10 H -0.213 1.213 11 H -0.201 1.201 12 C -0.054 4.054 13 N -0.310 5.310 14 C -0.034 4.034 15 C -0.096 4.096 16 C -0.042 4.042 17 C -0.140 4.140 18 N 0.551 4.449 19 O -0.382 6.382 20 O -0.375 6.375 21 C -0.063 4.063 22 C -0.165 4.165 23 C 0.124 3.876 24 O -0.302 6.302 25 H 0.037 0.963 26 H 0.093 0.907 27 H 0.038 0.962 28 H 0.040 0.960 29 H 0.103 0.897 30 H 0.026 0.974 31 H 0.069 0.931 32 H 0.036 0.964 33 H 0.079 0.921 34 H 0.151 0.849 35 H 0.103 0.897 36 H 0.067 0.933 37 H 0.176 0.824 38 H 0.173 0.827 39 H 0.170 0.830 40 H 0.265 0.735 Dipole moment (debyes) X Y Z Total from point charges 2.099 2.922 16.454 16.843 hybrid contribution 0.727 -0.067 -0.991 1.231 sum 2.825 2.856 15.463 15.976 Atomic orbital electron populations 1.21654 0.97330 0.98728 1.00048 1.18098 0.93224 0.91935 0.89873 1.21842 0.97786 0.99168 1.00164 1.21082 1.31326 1.11978 0.90389 0.92915 1.24879 0.94947 0.94928 0.98754 1.69817 1.36696 1.22731 1.23052 0.86643 0.79217 0.79474 0.82912 1.20723 1.21301 1.20076 1.22228 0.95842 0.98035 0.89260 1.60770 1.63387 1.06108 1.00760 1.20863 0.97722 0.97883 0.86933 1.20290 0.95263 0.96057 0.98030 1.20863 0.93221 1.00042 0.90087 1.21092 0.95299 0.99035 0.98588 1.43566 1.00846 1.00237 1.00258 1.94520 1.64615 1.61648 1.17377 1.94559 1.59928 1.09403 1.73647 1.20859 0.93935 0.92105 0.99418 1.21408 0.96927 1.01748 0.96404 1.18696 0.86032 0.91521 0.91390 1.84743 1.29786 1.67346 1.48349 0.96292 0.90660 0.96167 0.96045 0.89687 0.97441 0.93105 0.96368 0.92115 0.84935 0.89712 0.93282 0.82395 0.82716 0.83005 0.73461 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.78 8.09 37.16 0.30 -2.48 16 2 C 0.07 1.56 0.57 -155.66 -0.09 1.48 16 3 C -0.13 -2.85 7.92 37.16 0.29 -2.56 16 4 C -0.51 -13.11 8.01 -34.44 -0.28 -13.38 16 5 H 0.05 1.36 7.74 -52.48 -0.41 0.95 16 6 C 0.07 1.73 5.15 -17.82 -0.09 1.64 16 7 N -0.88 -23.63 9.35 55.43 0.52 -23.11 16 8 Si 0.89 20.51 29.54 -169.99 -5.02 15.49 16 9 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 10 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 11 H -0.28 -6.32 7.11 56.52 0.40 -5.91 16 12 C 0.07 1.41 4.59 -3.82 -0.02 1.39 16 13 N -0.68 -10.43 5.70 -115.06 -0.66 -11.09 16 14 C 0.10 1.20 5.44 -4.97 -0.03 1.17 16 15 C -0.09 -1.05 5.44 -104.47 -0.57 -1.62 16 16 C -0.02 -0.25 9.17 -39.61 -0.36 -0.62 16 17 C -0.06 -0.65 6.85 -79.93 -0.55 -1.20 16 18 N 0.03 0.43 4.45 33.97 0.15 0.58 16 19 O -0.17 -2.27 18.44 -29.46 -0.54 -2.81 16 20 O -0.16 -2.29 18.44 -29.46 -0.54 -2.84 16 21 C -0.04 -0.40 9.55 -39.61 -0.38 -0.78 16 22 C -0.15 -1.19 9.99 -39.43 -0.39 -1.58 16 23 C 0.17 1.66 6.56 -39.21 -0.26 1.40 16 24 O -0.49 -4.53 12.46 -19.40 -0.24 -4.77 16 25 H 0.02 0.39 7.60 -51.93 -0.39 0.00 16 26 H 0.07 1.94 6.07 -51.93 -0.32 1.62 16 27 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 28 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.08 2.09 6.07 -51.93 -0.32 1.78 16 30 H 0.01 0.13 6.57 -51.93 -0.34 -0.21 16 31 H 0.26 6.69 8.31 -40.82 -0.34 6.35 16 32 H 0.02 0.35 8.14 -51.93 -0.42 -0.08 16 33 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 34 H 0.33 4.78 5.59 -39.29 -0.22 4.56 16 35 H 0.08 1.04 7.95 -51.93 -0.41 0.63 16 36 H 0.05 0.62 8.01 -51.93 -0.42 0.21 16 37 H 0.16 1.72 7.55 -52.48 -0.40 1.32 16 38 H 0.16 1.12 7.61 -52.49 -0.40 0.72 16 39 H 0.15 0.85 8.06 -52.49 -0.42 0.43 16 40 H 0.41 2.51 8.41 45.56 0.38 2.89 16 LS Contribution 335.14 15.07 5.05 5.05 Total: -1.00 -28.70 335.14 -8.18 -36.88 By element: Atomic # 1 Polarization: 8.24 SS G_CDS: -4.48 Total: 3.76 kcal Atomic # 6 Polarization: -14.73 SS G_CDS: -2.41 Total: -17.14 kcal Atomic # 7 Polarization: -33.63 SS G_CDS: 0.01 Total: -33.62 kcal Atomic # 8 Polarization: -9.09 SS G_CDS: -1.33 Total: -10.42 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -5.02 Total: 15.49 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -28.70 -8.18 -36.88 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000839162845.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.958 kcal (2) G-P(sol) polarization free energy of solvation -28.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.181 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.879 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds