Wall clock time and date at job start Tue Mar 31 2020 06:43:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.46798 * 2 1 4 4 C 1.50692 * 109.47239 * 240.00193 * 2 1 3 5 5 H 1.08004 * 120.00058 * 239.99879 * 4 2 1 6 6 C 1.37879 * 120.00172 * 59.99753 * 4 2 1 7 7 N 1.31506 * 119.99913 * 0.02562 * 6 4 2 8 8 Si 1.86802 * 119.99709 * 179.97438 * 6 4 2 9 9 H 1.48509 * 109.46994 * 90.00346 * 8 6 4 10 10 H 1.48504 * 109.46919 * 209.99932 * 8 6 4 11 11 H 1.48494 * 109.47546 * 329.99868 * 8 6 4 12 12 C 1.53004 * 109.47191 * 119.99674 * 2 1 3 13 13 N 1.46895 * 109.47035 * 300.00419 * 12 2 1 14 14 C 1.46906 * 110.99789 * 179.97438 * 13 12 2 15 15 C 1.50703 * 109.47109 * 179.97438 * 14 13 12 16 16 C 1.38162 * 120.02790 * 104.72688 * 15 14 13 17 17 C 1.38240 * 120.05525 * 179.79400 * 16 15 14 18 18 N 1.48014 * 119.94447 * 180.20961 * 17 16 15 19 19 O 1.21797 * 119.99863 * 180.24874 * 18 17 16 20 20 O 1.21791 * 119.99867 * 0.24990 * 18 17 16 21 21 C 1.38289 * 120.11432 * 0.45773 * 17 16 15 22 22 C 1.38118 * 120.05220 * 359.79428 * 21 17 16 23 23 C 1.38714 * 120.02678 * 284.99988 * 15 14 13 24 24 O 1.35892 * 120.05649 * 0.02562 * 23 15 14 25 25 H 1.09003 * 109.47221 * 299.99569 * 1 2 3 26 26 H 1.08997 * 109.47170 * 60.00348 * 1 2 3 27 27 H 1.09005 * 109.46721 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47612 * 180.02562 * 3 2 1 29 29 H 1.08997 * 109.47506 * 300.00323 * 3 2 1 30 30 H 1.09004 * 109.47572 * 59.99937 * 3 2 1 31 31 H 0.96998 * 119.99843 * 180.02562 * 7 6 4 32 32 H 1.08996 * 109.46863 * 180.02562 * 12 2 1 33 33 H 1.09002 * 109.46661 * 60.00438 * 12 2 1 34 34 H 1.00902 * 111.00273 * 303.95364 * 13 12 2 35 35 H 1.08992 * 109.47459 * 299.99826 * 14 13 12 36 36 H 1.09004 * 109.47040 * 59.99976 * 14 13 12 37 37 H 1.08004 * 119.97309 * 0.02562 * 16 15 14 38 38 H 1.08000 * 119.97502 * 179.76800 * 21 17 16 39 39 H 1.08001 * 120.02960 * 179.97438 * 22 21 17 40 40 H 0.96703 * 114.00643 * 89.99555 * 24 23 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0323 -0.7103 -1.2304 5 1 2.6533 -1.5884 -1.1313 6 6 1.6993 -0.2393 -2.4827 7 7 0.9436 0.8302 -2.6034 8 14 2.3226 -1.1195 -4.0079 9 1 1.3449 -2.1616 -4.4123 10 1 2.4874 -0.1401 -5.1120 11 1 3.6310 -1.7564 -3.7119 12 6 2.0400 -0.7212 1.2493 13 7 1.5503 -0.0287 2.4487 14 6 2.0209 -0.6951 3.6704 15 6 1.5002 0.0422 4.8772 16 6 0.4568 -0.4858 5.6129 17 6 -0.0184 0.1880 6.7225 18 7 -1.1333 -0.3821 7.5117 19 8 -1.5558 0.2129 8.4869 20 8 -1.6282 -1.4462 7.1860 21 6 0.5426 1.3963 7.0935 22 6 1.5825 1.9309 6.3583 23 6 2.0645 1.2542 5.2469 24 8 3.0868 1.7786 4.5212 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 3.1299 1.4427 -0.0005 29 1 1.6766 1.9564 -0.8899 30 1 1.6766 1.9564 0.8900 31 1 0.7089 1.1613 -3.4844 32 1 3.1300 -0.7208 1.2495 33 1 1.6767 -1.7489 1.2493 34 1 1.8197 0.9437 2.4401 35 1 1.6571 -1.7224 3.6870 36 1 3.1108 -0.6953 3.6874 37 1 0.0145 -1.4275 5.3232 38 1 0.1671 1.9226 7.9586 39 1 2.0201 2.8747 6.6481 40 1 2.8017 2.3566 3.8004 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000839162845.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:43:06 Heat of formation + Delta-G solvation = -42.389283 kcal Electronic energy + Delta-G solvation = -23468.604838 eV Core-core repulsion = 19865.040256 eV Total energy + Delta-G solvation = -3603.564582 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -43.27109 -41.28087 -38.63329 -37.98193 -37.69116 -35.89816 -33.53002 -32.17016 -31.75397 -27.51257 -27.48232 -27.24120 -27.06352 -24.76488 -23.83982 -22.71045 -20.42693 -20.02282 -19.80155 -19.53029 -18.62047 -17.89889 -17.35894 -16.94025 -16.77855 -16.24592 -15.77312 -15.39699 -15.10180 -14.55332 -14.41170 -14.13526 -13.87019 -13.62377 -13.51130 -13.23513 -13.04481 -12.88027 -12.74708 -12.53796 -12.48649 -12.31167 -12.31094 -12.10762 -12.07863 -11.71108 -11.31688 -11.00263 -10.61242 -10.41321 -10.34548 -10.24999 -9.24770 -7.97418 -6.13668 -1.29106 -0.14510 0.19758 0.35687 1.41841 1.45107 1.52130 2.05681 2.46283 2.89180 3.16827 3.25470 3.41254 3.57193 3.70306 3.85072 4.05698 4.34260 4.47581 4.58353 4.61024 4.63657 4.72420 4.78357 4.87663 4.96121 5.04302 5.14191 5.17339 5.28522 5.35105 5.40720 5.53870 5.70670 5.77584 6.06218 6.22297 6.34049 6.43476 6.47244 6.50618 6.60922 6.95925 7.54228 9.00397 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.025811 B = 0.003235 C = 0.003052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1084.566350 B = 8652.925107 C = 9172.052504 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C 0.060 3.940 3 C -0.121 4.121 4 C -0.527 4.527 5 H 0.045 0.955 6 C 0.024 3.976 7 N -0.902 5.902 8 Si 0.941 3.059 9 H -0.282 1.282 10 H -0.286 1.286 11 H -0.273 1.273 12 C 0.089 3.911 13 N -0.679 5.679 14 C 0.101 3.899 15 C -0.107 4.107 16 C -0.027 4.027 17 C -0.073 4.073 18 N 0.034 4.966 19 O -0.162 6.162 20 O -0.200 6.200 21 C -0.032 4.032 22 C -0.133 4.133 23 C 0.178 3.822 24 O -0.495 6.495 25 H 0.034 0.966 26 H 0.047 0.953 27 H 0.008 0.992 28 H 0.021 0.979 29 H 0.053 0.947 30 H 0.039 0.961 31 H 0.257 0.743 32 H 0.016 0.984 33 H 0.050 0.950 34 H 0.339 0.661 35 H 0.083 0.917 36 H 0.052 0.948 37 H 0.153 0.847 38 H 0.177 0.823 39 H 0.186 0.814 40 H 0.420 0.580 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.943 4.487 17.935 18.721 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.059 3.941 3 C -0.179 4.179 4 C -0.566 4.566 5 H 0.063 0.937 6 C -0.175 4.175 7 N -0.541 5.541 8 Si 0.768 3.232 9 H -0.208 1.208 10 H -0.212 1.212 11 H -0.197 1.197 12 C -0.039 4.039 13 N -0.312 5.312 14 C -0.028 4.028 15 C -0.109 4.109 16 C -0.047 4.047 17 C -0.156 4.156 18 N 0.548 4.452 19 O -0.381 6.381 20 O -0.408 6.408 21 C -0.052 4.052 22 C -0.151 4.151 23 C 0.131 3.869 24 O -0.310 6.310 25 H 0.053 0.947 26 H 0.066 0.934 27 H 0.027 0.973 28 H 0.040 0.960 29 H 0.072 0.928 30 H 0.057 0.943 31 H 0.066 0.934 32 H 0.035 0.965 33 H 0.069 0.931 34 H 0.159 0.841 35 H 0.102 0.898 36 H 0.070 0.930 37 H 0.170 0.830 38 H 0.194 0.806 39 H 0.204 0.796 40 H 0.283 0.717 Dipole moment (debyes) X Y Z Total from point charges 3.140 4.189 17.740 18.497 hybrid contribution 0.449 -0.384 -1.349 1.473 sum 3.590 3.805 16.391 17.206 Atomic orbital electron populations 1.21489 0.97939 0.97677 0.99343 1.18146 0.92678 0.92718 0.90565 1.21657 0.97651 0.98395 1.00164 1.21448 1.31169 1.11962 0.91980 0.93699 1.25488 0.95356 0.95624 1.01053 1.69948 1.37368 1.23541 1.23234 0.85832 0.78708 0.78457 0.80209 1.20827 1.21158 1.19732 1.21843 0.95468 0.97283 0.89341 1.60622 1.63542 1.06443 1.00556 1.20784 0.97874 0.97897 0.86250 1.20109 0.95985 0.96995 0.97806 1.20836 0.93395 1.00104 0.90386 1.21226 0.95302 1.00186 0.98920 1.43853 1.01121 0.99993 1.00220 1.94485 1.64715 1.61302 1.17577 1.94560 1.61335 1.10465 1.74406 1.21198 0.93413 0.90862 0.99692 1.21707 0.95932 1.02465 0.95027 1.18810 0.85450 0.90894 0.91709 1.84716 1.29674 1.67668 1.48961 0.94684 0.93437 0.97322 0.96014 0.92787 0.94269 0.93373 0.96529 0.93141 0.84109 0.89838 0.92990 0.82972 0.80577 0.79639 0.71744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.93 8.09 71.98 0.58 -4.35 16 2 C 0.06 2.66 0.57 -52.93 -0.03 2.63 16 3 C -0.12 -5.09 7.92 71.98 0.57 -4.52 16 4 C -0.53 -27.20 8.01 25.60 0.21 -27.00 16 5 H 0.04 2.33 7.74 -2.91 -0.02 2.30 16 6 C 0.02 1.26 5.15 84.66 0.44 1.69 16 7 N -0.90 -48.65 9.35 21.45 0.20 -48.45 16 8 Si 0.94 42.19 29.54 68.60 2.03 44.22 16 9 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 10 H -0.29 -12.66 7.11 99.48 0.71 -11.96 16 11 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 12 C 0.09 3.30 4.59 86.31 0.40 3.70 16 13 N -0.68 -19.69 5.70 -517.92 -2.95 -22.64 16 14 C 0.10 2.38 5.44 85.56 0.47 2.85 16 15 C -0.11 -2.18 5.44 -19.77 -0.11 -2.28 16 16 C -0.03 -0.59 9.17 22.25 0.20 -0.39 16 17 C -0.07 -1.55 6.85 36.39 0.25 -1.30 16 18 N 0.03 0.88 4.45 -46.43 -0.21 0.68 16 19 O -0.16 -4.22 18.44 18.89 0.35 -3.87 16 20 O -0.20 -5.90 18.44 18.90 0.35 -5.55 16 21 C -0.03 -0.48 9.55 22.25 0.21 -0.27 16 22 C -0.13 -1.61 9.99 22.37 0.22 -1.39 16 23 C 0.18 2.89 6.56 22.51 0.15 3.04 16 24 O -0.50 -7.38 12.46 -92.33 -1.15 -8.53 16 25 H 0.03 1.46 7.60 -2.39 -0.02 1.44 16 26 H 0.05 2.46 6.07 -2.39 -0.01 2.44 16 27 H 0.01 0.36 8.14 -2.38 -0.02 0.35 16 28 H 0.02 0.87 8.14 -2.39 -0.02 0.85 16 29 H 0.05 2.64 6.07 -2.39 -0.01 2.62 16 30 H 0.04 1.35 6.57 -2.38 -0.02 1.34 16 31 H 0.26 13.42 8.31 -92.71 -0.77 12.65 16 32 H 0.02 0.61 8.14 -2.39 -0.02 0.59 16 33 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 34 H 0.34 8.86 5.59 -89.69 -0.50 8.36 16 35 H 0.08 1.99 7.95 -2.39 -0.02 1.97 16 36 H 0.05 1.22 8.01 -2.38 -0.02 1.20 16 37 H 0.15 3.36 7.55 -2.91 -0.02 3.34 16 38 H 0.18 1.86 7.61 -2.91 -0.02 1.84 16 39 H 0.19 1.05 8.06 -2.91 -0.02 1.03 16 40 H 0.42 3.61 8.41 -74.05 -0.62 2.99 16 Total: -1.00 -61.75 335.14 2.13 -59.63 By element: Atomic # 1 Polarization: 12.16 SS G_CDS: -0.04 Total: 12.12 kcal Atomic # 6 Polarization: -31.15 SS G_CDS: 3.55 Total: -27.59 kcal Atomic # 7 Polarization: -67.45 SS G_CDS: -2.96 Total: -70.41 kcal Atomic # 8 Polarization: -17.51 SS G_CDS: -0.45 Total: -17.96 kcal Atomic # 14 Polarization: 42.19 SS G_CDS: 2.03 Total: 44.22 kcal Total: -61.75 2.13 -59.63 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000839162845.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.240 kcal (2) G-P(sol) polarization free energy of solvation -61.755 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.126 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.629 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds