Wall clock time and date at job start Tue Mar 31 2020 06:58:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.47333 * 2 1 4 4 H 1.09007 * 109.47173 * 179.23875 * 3 2 1 5 5 C 1.50698 * 109.46999 * 299.23875 * 3 2 1 6 6 H 1.08005 * 119.99585 * 120.00014 * 5 3 2 7 7 C 1.37869 * 120.00264 * 299.99958 * 5 3 2 8 8 N 1.31516 * 120.00184 * 180.02562 * 7 5 3 9 9 Si 1.86801 * 120.00002 * 359.97438 * 7 5 3 10 10 H 1.48498 * 109.47234 * 89.99993 * 9 7 5 11 11 H 1.48501 * 109.47213 * 210.00089 * 9 7 5 12 12 H 1.48498 * 109.47232 * 329.99842 * 9 7 5 13 13 N 1.46901 * 109.47068 * 59.23866 * 3 2 1 14 14 C 1.46909 * 110.99555 * 85.85709 * 13 3 2 15 15 C 1.53005 * 109.46518 * 175.81333 * 14 13 3 16 16 H 1.08995 * 109.47470 * 60.00122 * 15 14 13 17 17 O 1.42897 * 109.47136 * 299.99837 * 15 14 13 18 18 C 1.50699 * 109.46754 * 180.02562 * 15 14 13 19 19 C 1.38255 * 120.00054 * 85.00022 * 18 15 14 20 20 C 1.38215 * 119.99982 * 180.02562 * 19 18 15 21 21 C 1.38249 * 120.00091 * 359.95241 * 20 19 18 22 22 C 1.38211 * 120.00216 * 0.02562 * 21 20 19 23 23 N 1.48019 * 120.00133 * 180.02562 * 22 21 20 24 24 O 1.21799 * 119.99985 * 0.02562 * 23 22 21 25 25 O 1.21812 * 119.99788 * 180.02562 * 23 22 21 26 26 C 1.38212 * 120.00101 * 264.72372 * 18 15 14 27 27 H 1.09001 * 109.47342 * 175.56849 * 1 2 3 28 28 H 1.08995 * 109.46886 * 295.56977 * 1 2 3 29 29 H 1.08996 * 109.47048 * 55.56941 * 1 2 3 30 30 H 1.09004 * 109.47214 * 239.99843 * 2 1 3 31 31 H 1.09006 * 109.47343 * 120.00365 * 2 1 3 32 32 H 0.97003 * 119.99976 * 180.02562 * 8 7 5 33 33 H 1.00891 * 111.00386 * 209.80915 * 13 3 2 34 34 H 1.08998 * 109.46899 * 55.81729 * 14 13 3 35 35 H 1.08993 * 109.47479 * 295.80923 * 14 13 3 36 36 H 0.96698 * 114.00254 * 300.00181 * 17 15 14 37 37 H 1.08000 * 120.00344 * 359.97438 * 19 18 15 38 38 H 1.08010 * 119.99872 * 179.97438 * 20 19 18 39 39 H 1.08003 * 120.00403 * 180.02562 * 21 20 19 40 40 H 1.08000 * 119.99822 * 0.02562 * 26 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1300 1.4425 0.0137 5 6 1.5532 2.1474 -1.2398 6 1 0.9311 3.0260 -1.1523 7 6 1.9019 1.6709 -2.4856 8 7 1.4774 2.2864 -3.5676 9 14 2.9784 0.1518 -2.6369 10 1 2.1209 -1.0596 -2.6874 11 1 3.7857 0.2390 -3.8802 12 1 3.8844 0.0683 -1.4633 13 7 1.5354 2.1403 1.1901 14 6 2.4158 1.9160 2.3446 15 6 1.9172 2.7397 3.5337 16 1 0.9017 2.4349 3.7865 17 8 1.9266 4.1266 3.1898 18 6 2.8206 2.5102 4.7178 19 6 3.9781 3.2530 4.8585 20 6 4.8069 3.0421 5.9443 21 6 4.4780 2.0890 6.8901 22 6 3.3207 1.3467 6.7498 23 7 2.9683 0.3266 7.7629 24 8 3.6980 0.1417 8.7204 25 8 1.9485 -0.3280 7.6389 26 6 2.4891 1.5610 5.6662 27 1 -0.3634 -1.0246 -0.0794 28 1 -0.3633 0.4435 0.9270 29 1 -0.3633 0.5810 -0.8476 30 1 1.8934 -0.5139 -0.8900 31 1 1.8934 -0.5139 0.8900 32 1 1.7224 1.9508 -4.4441 33 1 1.4201 3.1262 1.0096 34 1 3.4313 2.2209 2.0918 35 1 2.4086 0.8581 2.6070 36 1 2.8000 4.4673 2.9530 37 1 4.2351 3.9976 4.1196 38 1 5.7114 3.6222 6.0539 39 1 5.1255 1.9244 7.7388 40 1 1.5828 0.9835 5.5585 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000846988427.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:58:01 Heat of formation + Delta-G solvation = -25.734503 kcal Electronic energy + Delta-G solvation = -23386.568716 eV Core-core repulsion = 19783.726340 eV Total energy + Delta-G solvation = -3602.842376 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.40598 -40.26221 -37.77545 -36.77850 -36.10209 -32.87858 -32.31359 -32.14033 -31.23050 -28.10689 -26.85594 -26.11798 -23.34234 -23.16364 -22.95844 -21.50759 -19.60970 -19.19211 -18.86375 -17.74545 -17.35691 -16.85422 -16.36637 -16.27320 -15.67912 -14.97334 -14.54685 -14.34143 -14.01669 -13.70088 -13.38477 -13.21875 -12.81214 -12.71032 -12.46900 -12.11346 -11.96690 -11.78244 -11.44741 -11.37627 -11.35126 -11.20146 -10.85330 -10.64932 -10.35275 -10.24517 -10.05029 -9.97837 -9.53543 -9.36761 -9.02964 -8.64951 -7.63664 -6.17190 -4.16717 -0.45351 0.50876 1.06154 1.13894 2.85959 3.20754 3.29093 3.31562 3.83902 4.03761 4.15933 4.30590 4.31176 4.44016 4.57851 4.63559 4.97881 5.08641 5.15585 5.16862 5.31330 5.34966 5.50213 5.63745 5.80105 5.83090 6.04412 6.09104 6.14292 6.17629 6.39569 6.63119 6.83523 7.02683 7.13712 7.38516 7.40373 7.42148 7.52668 7.78435 8.24021 8.51179 8.87560 9.44781 10.95482 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.021868 B = 0.003471 C = 0.003299 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1280.131176 B = 8065.918003 C = 8486.249872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.114 4.114 3 C 0.186 3.814 4 H -0.001 1.001 5 C -0.516 4.516 6 H 0.080 0.920 7 C 0.074 3.926 8 N -0.896 5.896 9 Si 0.886 3.114 10 H -0.276 1.276 11 H -0.297 1.297 12 H -0.271 1.271 13 N -0.669 5.669 14 C 0.032 3.968 15 C 0.148 3.852 16 H 0.123 0.877 17 O -0.544 6.544 18 C -0.104 4.104 19 C -0.061 4.061 20 C -0.113 4.113 21 C -0.061 4.061 22 C -0.042 4.042 23 N 0.029 4.971 24 O -0.164 6.164 25 O -0.156 6.156 26 C -0.045 4.045 27 H 0.021 0.979 28 H 0.054 0.946 29 H 0.068 0.932 30 H 0.041 0.959 31 H 0.029 0.971 32 H 0.265 0.735 33 H 0.348 0.652 34 H 0.026 0.974 35 H 0.074 0.926 36 H 0.371 0.629 37 H 0.142 0.858 38 H 0.149 0.851 39 H 0.153 0.847 40 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.970 1.673 18.805 20.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.152 4.152 3 C 0.078 3.922 4 H 0.016 0.984 5 C -0.554 4.554 6 H 0.098 0.902 7 C -0.128 4.128 8 N -0.533 5.533 9 Si 0.717 3.283 10 H -0.203 1.203 11 H -0.225 1.225 12 H -0.196 1.196 13 N -0.302 5.302 14 C -0.098 4.098 15 C 0.088 3.912 16 H 0.141 0.859 17 O -0.349 6.349 18 C -0.106 4.106 19 C -0.079 4.079 20 C -0.131 4.131 21 C -0.080 4.080 22 C -0.125 4.125 23 N 0.548 4.452 24 O -0.379 6.379 25 O -0.373 6.373 26 C -0.064 4.064 27 H 0.040 0.960 28 H 0.073 0.927 29 H 0.087 0.913 30 H 0.059 0.941 31 H 0.047 0.953 32 H 0.075 0.925 33 H 0.167 0.833 34 H 0.044 0.956 35 H 0.093 0.907 36 H 0.219 0.781 37 H 0.160 0.840 38 H 0.166 0.834 39 H 0.170 0.830 40 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 6.067 1.614 18.401 19.443 hybrid contribution 1.958 -0.714 -0.269 2.102 sum 8.026 0.901 18.132 19.849 Atomic orbital electron populations 1.21468 0.95392 0.98436 1.02951 1.21758 0.97548 0.98091 0.97764 1.19593 0.92694 0.91356 0.88607 0.98355 1.21005 1.32648 1.13382 0.88342 0.90221 1.24888 0.95475 0.96704 0.95749 1.69883 1.45241 1.40357 0.97864 0.86876 0.80812 0.83888 0.76751 1.20301 1.22496 1.19605 1.60455 1.47866 1.17348 1.04550 1.22624 0.94878 1.00039 0.92292 1.21031 0.98826 0.82174 0.89133 0.85925 1.86711 1.35144 1.23400 1.89646 1.20800 0.96870 0.95683 0.97270 1.21439 0.92293 0.97115 0.97066 1.21190 1.00681 0.97742 0.93530 1.21076 0.93888 0.93069 0.99945 1.21110 1.00613 0.97192 0.93594 1.43637 0.99902 1.00565 1.01093 1.94527 1.48823 1.72502 1.22037 1.94569 1.14651 1.45861 1.82250 1.20922 0.99112 0.96150 0.90214 0.96029 0.92712 0.91281 0.94052 0.95253 0.92524 0.83265 0.95608 0.90747 0.78094 0.84002 0.83362 0.82980 0.82569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.56 9.52 37.16 0.35 -2.20 16 2 C -0.11 -2.42 5.29 -26.73 -0.14 -2.57 16 3 C 0.19 4.11 1.89 -68.86 -0.13 3.98 16 4 H 0.00 -0.02 6.78 -51.93 -0.35 -0.38 16 5 C -0.52 -13.56 7.87 -34.44 -0.27 -13.83 16 6 H 0.08 2.28 7.85 -52.48 -0.41 1.87 16 7 C 0.07 2.05 5.45 -17.82 -0.10 1.96 16 8 N -0.90 -26.37 13.96 55.43 0.77 -25.60 16 9 Si 0.89 21.40 24.38 -169.99 -4.14 17.25 16 10 H -0.28 -6.58 6.86 56.52 0.39 -6.19 16 11 H -0.30 -7.21 7.11 56.52 0.40 -6.81 16 12 H -0.27 -6.29 6.53 56.52 0.37 -5.92 16 13 N -0.67 -12.16 5.62 -107.94 -0.61 -12.77 16 14 C 0.03 0.45 5.22 -3.82 -0.02 0.43 16 15 C 0.15 1.64 3.48 -27.88 -0.10 1.55 16 16 H 0.12 1.42 8.05 -51.93 -0.42 1.01 16 17 O -0.54 -6.14 12.40 -35.23 -0.44 -6.58 16 18 C -0.10 -0.98 5.00 -104.63 -0.52 -1.50 16 19 C -0.06 -0.45 9.33 -39.58 -0.37 -0.82 16 20 C -0.11 -0.72 10.05 -39.59 -0.40 -1.12 16 21 C -0.06 -0.49 9.56 -39.59 -0.38 -0.87 16 22 C -0.04 -0.44 6.85 -79.95 -0.55 -0.99 16 23 N 0.03 0.36 4.45 33.96 0.15 0.51 16 24 O -0.16 -2.13 18.45 -29.46 -0.54 -2.67 16 25 O -0.16 -2.15 18.45 -29.46 -0.54 -2.70 16 26 C -0.04 -0.45 9.19 -39.58 -0.36 -0.82 16 27 H 0.02 0.39 8.14 -51.93 -0.42 -0.04 16 28 H 0.05 1.05 7.73 -51.93 -0.40 0.65 16 29 H 0.07 1.59 7.09 -51.93 -0.37 1.22 16 30 H 0.04 0.94 3.26 -51.93 -0.17 0.77 16 31 H 0.03 0.56 7.61 -51.93 -0.40 0.16 16 32 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 33 H 0.35 6.48 7.49 -39.30 -0.29 6.19 16 34 H 0.03 0.36 7.95 -51.93 -0.41 -0.06 16 35 H 0.07 1.06 7.61 -51.93 -0.40 0.67 16 36 H 0.37 2.93 7.39 45.56 0.34 3.27 16 37 H 0.14 0.71 6.61 -52.49 -0.35 0.37 16 38 H 0.15 0.52 8.06 -52.48 -0.42 0.09 16 39 H 0.15 1.00 7.61 -52.48 -0.40 0.60 16 40 H 0.16 1.50 7.61 -52.49 -0.40 1.11 16 LS Contribution 332.06 15.07 5.00 5.00 Total: -1.00 -30.97 332.06 -7.78 -38.75 By element: Atomic # 1 Polarization: 10.06 SS G_CDS: -4.45 Total: 5.61 kcal Atomic # 6 Polarization: -13.82 SS G_CDS: -2.98 Total: -16.81 kcal Atomic # 7 Polarization: -38.17 SS G_CDS: 0.32 Total: -37.86 kcal Atomic # 8 Polarization: -10.42 SS G_CDS: -1.52 Total: -11.95 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -4.14 Total: 17.25 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -30.97 -7.78 -38.75 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000846988427.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.015 kcal (2) G-P(sol) polarization free energy of solvation -30.965 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.951 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.749 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.735 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds