Wall clock time and date at job start Tue Mar 31 2020 06:58:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.47333 * 2 1 4 4 H 1.09007 * 109.47173 * 179.23875 * 3 2 1 5 5 C 1.50698 * 109.46999 * 299.23875 * 3 2 1 6 6 H 1.08005 * 119.99585 * 120.00014 * 5 3 2 7 7 C 1.37869 * 120.00264 * 299.99958 * 5 3 2 8 8 N 1.31516 * 120.00184 * 180.02562 * 7 5 3 9 9 Si 1.86801 * 120.00002 * 359.97438 * 7 5 3 10 10 H 1.48498 * 109.47234 * 89.99993 * 9 7 5 11 11 H 1.48501 * 109.47213 * 210.00089 * 9 7 5 12 12 H 1.48498 * 109.47232 * 329.99842 * 9 7 5 13 13 N 1.46901 * 109.47068 * 59.23866 * 3 2 1 14 14 C 1.46909 * 110.99555 * 85.85709 * 13 3 2 15 15 C 1.53005 * 109.46518 * 175.81333 * 14 13 3 16 16 H 1.08995 * 109.47470 * 60.00122 * 15 14 13 17 17 O 1.42897 * 109.47136 * 299.99837 * 15 14 13 18 18 C 1.50699 * 109.46754 * 180.02562 * 15 14 13 19 19 C 1.38255 * 120.00054 * 85.00022 * 18 15 14 20 20 C 1.38215 * 119.99982 * 180.02562 * 19 18 15 21 21 C 1.38249 * 120.00091 * 359.95241 * 20 19 18 22 22 C 1.38211 * 120.00216 * 0.02562 * 21 20 19 23 23 N 1.48019 * 120.00133 * 180.02562 * 22 21 20 24 24 O 1.21799 * 119.99985 * 0.02562 * 23 22 21 25 25 O 1.21812 * 119.99788 * 180.02562 * 23 22 21 26 26 C 1.38212 * 120.00101 * 264.72372 * 18 15 14 27 27 H 1.09001 * 109.47342 * 175.56849 * 1 2 3 28 28 H 1.08995 * 109.46886 * 295.56977 * 1 2 3 29 29 H 1.08996 * 109.47048 * 55.56941 * 1 2 3 30 30 H 1.09004 * 109.47214 * 239.99843 * 2 1 3 31 31 H 1.09006 * 109.47343 * 120.00365 * 2 1 3 32 32 H 0.97003 * 119.99976 * 180.02562 * 8 7 5 33 33 H 1.00891 * 111.00386 * 209.80915 * 13 3 2 34 34 H 1.08998 * 109.46899 * 55.81729 * 14 13 3 35 35 H 1.08993 * 109.47479 * 295.80923 * 14 13 3 36 36 H 0.96698 * 114.00254 * 300.00181 * 17 15 14 37 37 H 1.08000 * 120.00344 * 359.97438 * 19 18 15 38 38 H 1.08010 * 119.99872 * 179.97438 * 20 19 18 39 39 H 1.08003 * 120.00403 * 180.02562 * 21 20 19 40 40 H 1.08000 * 119.99822 * 0.02562 * 26 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1300 1.4425 0.0137 5 6 1.5532 2.1474 -1.2398 6 1 0.9311 3.0260 -1.1523 7 6 1.9019 1.6709 -2.4856 8 7 1.4774 2.2864 -3.5676 9 14 2.9784 0.1518 -2.6369 10 1 2.1209 -1.0596 -2.6874 11 1 3.7857 0.2390 -3.8802 12 1 3.8844 0.0683 -1.4633 13 7 1.5354 2.1403 1.1901 14 6 2.4158 1.9160 2.3446 15 6 1.9172 2.7397 3.5337 16 1 0.9017 2.4349 3.7865 17 8 1.9266 4.1266 3.1898 18 6 2.8206 2.5102 4.7178 19 6 3.9781 3.2530 4.8585 20 6 4.8069 3.0421 5.9443 21 6 4.4780 2.0890 6.8901 22 6 3.3207 1.3467 6.7498 23 7 2.9683 0.3266 7.7629 24 8 3.6980 0.1417 8.7204 25 8 1.9485 -0.3280 7.6389 26 6 2.4891 1.5610 5.6662 27 1 -0.3634 -1.0246 -0.0794 28 1 -0.3633 0.4435 0.9270 29 1 -0.3633 0.5810 -0.8476 30 1 1.8934 -0.5139 -0.8900 31 1 1.8934 -0.5139 0.8900 32 1 1.7224 1.9508 -4.4441 33 1 1.4201 3.1262 1.0096 34 1 3.4313 2.2209 2.0918 35 1 2.4086 0.8581 2.6070 36 1 2.8000 4.4673 2.9530 37 1 4.2351 3.9976 4.1196 38 1 5.7114 3.6222 6.0539 39 1 5.1255 1.9244 7.7388 40 1 1.5828 0.9835 5.5585 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000846988427.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:58:01 Heat of formation + Delta-G solvation = -47.633534 kcal Electronic energy + Delta-G solvation = -23387.518329 eV Core-core repulsion = 19783.726340 eV Total energy + Delta-G solvation = -3603.791990 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -43.30101 -41.00989 -38.85911 -37.73347 -37.50196 -34.45214 -33.43166 -32.97796 -32.60846 -29.50989 -27.68421 -27.62116 -24.98411 -24.27745 -23.74132 -22.40379 -21.21236 -20.12173 -19.78762 -18.72720 -18.65011 -17.97375 -17.50748 -17.22617 -17.00184 -15.90040 -15.81076 -15.45099 -15.22436 -14.92239 -14.83204 -14.63768 -14.25024 -13.75850 -13.40048 -13.17844 -13.13995 -12.93408 -12.75016 -12.62329 -12.47756 -12.35479 -12.32599 -12.27084 -12.04639 -11.81788 -11.29481 -11.20327 -10.93217 -10.70441 -10.61613 -10.21749 -9.11453 -8.29510 -6.31787 -1.28456 -0.12904 0.25824 0.32736 1.30386 1.32554 1.42352 2.21092 2.30164 3.01846 3.07136 3.33467 3.44322 3.64741 3.74838 3.82001 3.93727 4.02805 4.13323 4.26043 4.33749 4.45882 4.57023 4.65525 4.70665 4.72825 4.83891 4.93192 4.95834 5.05329 5.15984 5.22522 5.34177 5.38371 5.45343 5.63548 5.75594 5.99575 6.42077 6.51927 6.64661 6.71158 6.87139 7.33785 8.86751 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.021868 B = 0.003471 C = 0.003299 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1280.131176 B = 8065.918003 C = 8486.249872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.117 4.117 3 C 0.192 3.808 4 H -0.004 1.004 5 C -0.508 4.508 6 H 0.042 0.958 7 C 0.019 3.981 8 N -0.945 5.945 9 Si 0.942 3.058 10 H -0.271 1.271 11 H -0.300 1.300 12 H -0.251 1.251 13 N -0.673 5.673 14 C 0.033 3.967 15 C 0.163 3.837 16 H 0.113 0.887 17 O -0.557 6.557 18 C -0.112 4.112 19 C -0.053 4.053 20 C -0.100 4.100 21 C -0.056 4.056 22 C -0.062 4.062 23 N 0.030 4.970 24 O -0.165 6.165 25 O -0.197 6.197 26 C -0.053 4.053 27 H 0.042 0.958 28 H 0.064 0.936 29 H 0.033 0.967 30 H 0.029 0.971 31 H 0.056 0.944 32 H 0.265 0.735 33 H 0.343 0.657 34 H 0.036 0.964 35 H 0.074 0.926 36 H 0.387 0.613 37 H 0.170 0.830 38 H 0.188 0.812 39 H 0.169 0.831 40 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.260 1.696 20.421 22.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.155 4.155 3 C 0.082 3.918 4 H 0.013 0.987 5 C -0.546 4.546 6 H 0.060 0.940 7 C -0.178 4.178 8 N -0.585 5.585 9 Si 0.771 3.229 10 H -0.197 1.197 11 H -0.228 1.228 12 H -0.175 1.175 13 N -0.305 5.305 14 C -0.097 4.097 15 C 0.103 3.897 16 H 0.131 0.869 17 O -0.364 6.364 18 C -0.113 4.113 19 C -0.071 4.071 20 C -0.118 4.118 21 C -0.075 4.075 22 C -0.145 4.145 23 N 0.545 4.455 24 O -0.383 6.383 25 O -0.406 6.406 26 C -0.073 4.073 27 H 0.061 0.939 28 H 0.083 0.917 29 H 0.053 0.947 30 H 0.047 0.953 31 H 0.075 0.925 32 H 0.074 0.926 33 H 0.162 0.838 34 H 0.054 0.946 35 H 0.093 0.907 36 H 0.237 0.763 37 H 0.188 0.812 38 H 0.205 0.795 39 H 0.186 0.814 40 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 8.316 1.608 20.041 21.758 hybrid contribution 1.284 -0.556 -0.718 1.573 sum 9.601 1.052 19.323 21.603 Atomic orbital electron populations 1.21372 0.95044 0.99243 1.01874 1.21756 0.97900 0.97373 0.98422 1.19402 0.92209 0.91889 0.88269 0.98691 1.21257 1.30940 1.12134 0.90298 0.93956 1.25656 0.97038 0.99657 0.95494 1.70027 1.47533 1.42501 0.98476 0.85948 0.79432 0.80448 0.77118 1.19709 1.22826 1.17543 1.60352 1.49071 1.16751 1.04300 1.22696 0.94658 1.00755 0.91574 1.20694 0.98743 0.81660 0.88602 0.86915 1.86693 1.36737 1.23255 1.89725 1.20567 0.97670 0.96525 0.96575 1.21849 0.91041 0.96470 0.97699 1.21626 1.01404 0.96741 0.92004 1.21451 0.92859 0.92468 1.00749 1.21275 1.02102 0.97666 0.93457 1.43981 0.99479 1.00734 1.01335 1.94491 1.48566 1.72596 1.22654 1.94562 1.15612 1.47445 1.82956 1.20927 0.99170 0.96580 0.90599 0.93883 0.91735 0.94745 0.95274 0.92494 0.92621 0.83770 0.94594 0.90732 0.76316 0.81246 0.79487 0.81402 0.83205 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.68 9.52 71.98 0.69 -3.99 16 2 C -0.12 -4.73 5.29 30.59 0.16 -4.57 16 3 C 0.19 8.23 1.89 44.17 0.08 8.32 16 4 H 0.00 -0.19 6.78 -2.38 -0.02 -0.21 16 5 C -0.51 -27.10 7.87 25.60 0.20 -26.90 16 6 H 0.04 2.52 7.85 -2.91 -0.02 2.50 16 7 C 0.02 1.08 5.45 84.65 0.46 1.54 16 8 N -0.94 -57.21 13.96 21.44 0.30 -56.91 16 9 Si 0.94 43.74 24.38 68.60 1.67 45.41 16 10 H -0.27 -12.23 6.86 99.48 0.68 -11.55 16 11 H -0.30 -13.97 7.11 99.48 0.71 -13.26 16 12 H -0.25 -10.76 6.53 99.48 0.65 -10.11 16 13 N -0.67 -23.68 5.62 -495.42 -2.78 -26.47 16 14 C 0.03 0.85 5.22 86.30 0.45 1.30 16 15 C 0.16 3.30 3.48 29.85 0.10 3.41 16 16 H 0.11 2.51 8.05 -2.39 -0.02 2.49 16 17 O -0.56 -11.34 12.40 -148.98 -1.85 -13.18 16 18 C -0.11 -1.81 5.00 -19.87 -0.10 -1.91 16 19 C -0.05 -0.55 9.33 22.27 0.21 -0.34 16 20 C -0.10 -0.80 10.05 22.27 0.22 -0.58 16 21 C -0.06 -0.73 9.56 22.27 0.21 -0.51 16 22 C -0.06 -1.21 6.85 36.37 0.25 -0.96 16 23 N 0.03 0.76 4.45 -46.46 -0.21 0.55 16 24 O -0.17 -4.18 18.45 18.89 0.35 -3.83 16 25 O -0.20 -5.58 18.45 18.87 0.35 -5.23 16 26 C -0.05 -1.01 9.19 22.27 0.20 -0.81 16 27 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 28 H 0.06 2.39 7.73 -2.39 -0.02 2.37 16 29 H 0.03 1.58 7.09 -2.39 -0.02 1.56 16 30 H 0.03 1.26 3.26 -2.38 -0.01 1.25 16 31 H 0.06 2.00 7.61 -2.38 -0.02 1.98 16 32 H 0.26 15.14 8.31 -92.71 -0.77 14.37 16 33 H 0.34 12.65 7.49 -89.70 -0.67 11.98 16 34 H 0.04 0.87 7.95 -2.39 -0.02 0.86 16 35 H 0.07 1.94 7.61 -2.39 -0.02 1.93 16 36 H 0.39 4.90 7.39 -74.06 -0.55 4.35 16 37 H 0.17 0.82 6.61 -2.91 -0.02 0.80 16 38 H 0.19 0.12 8.06 -2.91 -0.02 0.10 16 39 H 0.17 1.62 7.61 -2.91 -0.02 1.60 16 40 H 0.15 2.91 7.61 -2.91 -0.02 2.89 16 Total: -1.00 -69.07 332.06 0.76 -68.31 By element: Atomic # 1 Polarization: 17.58 SS G_CDS: -0.21 Total: 17.36 kcal Atomic # 6 Polarization: -29.15 SS G_CDS: 3.15 Total: -26.01 kcal Atomic # 7 Polarization: -80.14 SS G_CDS: -2.69 Total: -82.83 kcal Atomic # 8 Polarization: -21.10 SS G_CDS: -1.15 Total: -22.25 kcal Atomic # 14 Polarization: 43.74 SS G_CDS: 1.67 Total: 45.41 kcal Total: -69.07 0.76 -68.31 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000846988427.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.678 kcal (2) G-P(sol) polarization free energy of solvation -69.074 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.763 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.311 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds