Wall clock time and date at job start Tue Mar 31 2020 06:58:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52998 * 109.47377 * 2 1 4 4 H 1.09003 * 109.46984 * 177.96053 * 3 2 1 5 5 C 1.50700 * 109.47105 * 57.96104 * 3 2 1 6 6 H 1.08004 * 119.99510 * 240.00549 * 5 3 2 7 7 C 1.37873 * 120.00095 * 59.99757 * 5 3 2 8 8 N 1.31515 * 120.00339 * 359.97438 * 7 5 3 9 9 Si 1.86805 * 119.99683 * 180.02562 * 7 5 3 10 10 H 1.48496 * 109.47283 * 359.97438 * 9 7 5 11 11 H 1.48503 * 109.46673 * 119.99893 * 9 7 5 12 12 H 1.48497 * 109.47181 * 239.99907 * 9 7 5 13 13 N 1.46896 * 109.47065 * 297.95498 * 3 2 1 14 14 C 1.46896 * 111.00512 * 273.77971 * 13 3 2 15 15 C 1.52994 * 109.47508 * 174.61367 * 14 13 3 16 16 H 1.09000 * 109.46934 * 304.99962 * 15 14 13 17 17 O 1.42906 * 109.47118 * 64.99784 * 15 14 13 18 18 C 1.50703 * 109.47288 * 184.99810 * 15 14 13 19 19 C 1.38257 * 120.00089 * 279.72385 * 18 15 14 20 20 C 1.38209 * 120.00167 * 179.76333 * 19 18 15 21 21 C 1.38267 * 119.99711 * 0.51354 * 20 19 18 22 22 C 1.38213 * 119.99782 * 359.74450 * 21 20 19 23 23 N 1.48020 * 120.00023 * 179.97438 * 22 21 20 24 24 O 1.21799 * 120.00159 * 180.02562 * 23 22 21 25 25 O 1.21804 * 119.99761 * 0.02562 * 23 22 21 26 26 C 1.38208 * 119.99894 * 100.00034 * 18 15 14 27 27 H 1.08999 * 109.47443 * 174.45624 * 1 2 3 28 28 H 1.09007 * 109.46997 * 54.45297 * 1 2 3 29 29 H 1.09002 * 109.47303 * 294.45610 * 1 2 3 30 30 H 1.08995 * 109.47146 * 120.00371 * 2 1 3 31 31 H 1.09004 * 109.47074 * 239.99587 * 2 1 3 32 32 H 0.96994 * 120.00166 * 179.97438 * 8 7 5 33 33 H 1.00902 * 110.99619 * 149.82343 * 13 3 2 34 34 H 1.09006 * 109.46730 * 294.61177 * 14 13 3 35 35 H 1.08996 * 109.47238 * 54.60640 * 14 13 3 36 36 H 0.96704 * 114.00115 * 60.00068 * 17 15 14 37 37 H 1.08001 * 119.99857 * 0.02562 * 19 18 15 38 38 H 1.08000 * 120.00625 * 180.23134 * 20 19 18 39 39 H 1.08000 * 119.99944 * 179.72317 * 21 20 19 40 40 H 1.08001 * 119.99857 * 0.02562 * 26 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1294 1.4426 0.0366 5 6 1.4968 2.1673 1.2044 6 1 0.8797 3.0441 1.0740 7 6 1.7876 1.7112 2.4726 8 7 2.5385 0.6432 2.6313 9 14 1.1136 2.6094 3.9655 10 1 0.3031 3.7712 3.5200 11 1 0.2619 1.6851 4.7564 12 1 2.2406 3.0862 4.8068 13 7 1.5911 2.1205 -1.2234 14 6 2.5281 1.8850 -2.3299 15 6 1.9619 2.4912 -3.6155 16 1 0.9647 2.0906 -3.7976 17 8 1.8869 3.9118 -3.4794 18 6 2.8619 2.1443 -4.7734 19 6 4.0201 2.8677 -4.9897 20 6 4.8479 2.5464 -6.0487 21 6 4.5125 1.5082 -6.8981 22 6 3.3519 0.7885 -6.6850 23 7 2.9925 -0.3225 -7.5947 24 8 1.9695 -0.9564 -7.4071 25 8 3.7197 -0.6027 -8.5307 26 6 2.5265 1.1066 -5.6224 27 1 -0.3634 -1.0228 -0.0993 28 1 -0.3633 0.5975 -0.8362 29 1 -0.3634 0.4254 0.9355 30 1 1.8933 -0.5139 0.8899 31 1 1.8933 -0.5139 -0.8900 32 1 2.7433 0.3226 3.5235 33 1 1.4622 3.1083 -1.0627 34 1 3.4864 2.3508 -2.0999 35 1 2.6685 0.8126 -2.4651 36 1 2.7399 4.3368 -3.3151 37 1 4.2800 3.6812 -4.3286 38 1 5.7546 3.1090 -6.2155 39 1 5.1571 1.2600 -7.7283 40 1 1.6193 0.5446 -5.4563 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000846988428.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:58:04 Heat of formation + Delta-G solvation = -34.282104 kcal Electronic energy + Delta-G solvation = -23306.951453 eV Core-core repulsion = 19703.738425 eV Total energy + Delta-G solvation = -3603.213028 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.34511 -40.17476 -37.61281 -36.71735 -35.84885 -32.84577 -32.25470 -32.05831 -30.67764 -27.89041 -26.79583 -25.76041 -23.43923 -23.05005 -22.83791 -21.42493 -19.36840 -19.02768 -18.79489 -17.68514 -17.24398 -16.73106 -16.31972 -16.12922 -15.13436 -14.90480 -14.56076 -14.26547 -13.83012 -13.64952 -13.29148 -13.04324 -12.66182 -12.42330 -12.14021 -11.90227 -11.73182 -11.62338 -11.36799 -11.29161 -11.22339 -11.01611 -10.87702 -10.46410 -10.35500 -10.10927 -9.92342 -9.82653 -9.48981 -9.34666 -8.84640 -8.54751 -7.39072 -6.09041 -4.14705 -0.38824 0.58033 1.12583 1.20384 2.92951 3.23693 3.32580 3.36133 3.92244 4.10794 4.26165 4.34603 4.37905 4.51761 4.64398 4.72290 5.09485 5.19790 5.23141 5.27808 5.41169 5.52211 5.57027 5.75139 5.87760 5.99582 6.16487 6.24237 6.46393 6.64556 6.78808 7.16013 7.19859 7.42000 7.46527 7.46710 7.66416 7.72467 7.76072 8.17425 8.27483 8.56263 8.94209 9.50641 10.97020 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.024337 B = 0.003249 C = 0.003056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1150.236049 B = 8616.202305 C = 9161.269943 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.102 4.102 3 C 0.216 3.784 4 H -0.001 1.001 5 C -0.513 4.513 6 H 0.060 0.940 7 C 0.064 3.936 8 N -0.889 5.889 9 Si 0.893 3.107 10 H -0.272 1.272 11 H -0.283 1.283 12 H -0.285 1.285 13 N -0.680 5.680 14 C 0.037 3.963 15 C 0.149 3.851 16 H 0.122 0.878 17 O -0.546 6.546 18 C -0.103 4.103 19 C -0.061 4.061 20 C -0.114 4.114 21 C -0.061 4.061 22 C -0.042 4.042 23 N 0.029 4.971 24 O -0.156 6.156 25 O -0.165 6.165 26 C -0.044 4.044 27 H 0.013 0.987 28 H 0.047 0.953 29 H 0.052 0.948 30 H 0.086 0.914 31 H 0.008 0.992 32 H 0.260 0.740 33 H 0.338 0.662 34 H 0.023 0.977 35 H 0.074 0.926 36 H 0.369 0.631 37 H 0.141 0.859 38 H 0.148 0.852 39 H 0.152 0.848 40 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.035 4.359 -16.270 17.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.141 4.141 3 C 0.109 3.891 4 H 0.017 0.983 5 C -0.552 4.552 6 H 0.079 0.921 7 C -0.138 4.138 8 N -0.527 5.527 9 Si 0.721 3.279 10 H -0.197 1.197 11 H -0.209 1.209 12 H -0.212 1.212 13 N -0.312 5.312 14 C -0.094 4.094 15 C 0.089 3.911 16 H 0.140 0.860 17 O -0.351 6.351 18 C -0.105 4.105 19 C -0.079 4.079 20 C -0.132 4.132 21 C -0.080 4.080 22 C -0.125 4.125 23 N 0.548 4.452 24 O -0.373 6.373 25 O -0.380 6.380 26 C -0.063 4.063 27 H 0.032 0.968 28 H 0.066 0.934 29 H 0.071 0.929 30 H 0.104 0.896 31 H 0.027 0.973 32 H 0.070 0.930 33 H 0.156 0.844 34 H 0.041 0.959 35 H 0.093 0.907 36 H 0.217 0.783 37 H 0.159 0.841 38 H 0.166 0.834 39 H 0.170 0.830 40 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 4.230 4.149 -15.960 17.024 hybrid contribution 1.062 0.603 0.961 1.554 sum 5.292 4.752 -14.999 16.599 Atomic orbital electron populations 1.21439 0.97352 0.97241 1.01646 1.21435 0.95251 0.98134 0.99286 1.19139 0.93193 0.91687 0.85089 0.98343 1.21206 1.31712 1.12035 0.90248 0.92138 1.24887 0.95036 0.94995 0.98925 1.69891 1.37403 1.23069 1.22375 0.86515 0.78761 0.79813 0.82792 1.19706 1.20945 1.21159 1.60591 1.46484 1.16957 1.07128 1.22529 0.94170 1.00905 0.91802 1.21083 0.98692 0.81451 0.89873 0.86035 1.86702 1.35323 1.18638 1.94394 1.20830 0.96853 0.95143 0.97671 1.21433 0.92339 0.97964 0.96210 1.21182 1.00655 0.96906 0.94472 1.21068 0.93804 0.93430 0.99716 1.21113 1.00591 0.94377 0.96437 1.43636 0.99912 1.01041 1.00591 1.94567 1.14332 1.50328 1.78083 1.94523 1.49202 1.72233 1.22016 1.20945 0.99142 0.95743 0.90481 0.96767 0.93413 0.92900 0.89615 0.97307 0.92961 0.84389 0.95883 0.90746 0.78344 0.84090 0.83418 0.83017 0.82575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.62 9.46 37.15 0.35 -2.27 16 2 C -0.10 -2.40 5.57 -26.74 -0.15 -2.55 16 3 C 0.22 5.08 2.30 -68.87 -0.16 4.92 16 4 H 0.00 -0.03 7.84 -51.93 -0.41 -0.43 16 5 C -0.51 -13.24 7.33 -34.44 -0.25 -13.49 16 6 H 0.06 1.56 7.60 -52.48 -0.40 1.16 16 7 C 0.06 1.68 5.30 -17.82 -0.09 1.59 16 8 N -0.89 -24.45 11.34 55.43 0.63 -23.83 16 9 Si 0.89 20.60 29.54 -169.99 -5.02 15.58 16 10 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 11 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 12 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 13 N -0.68 -13.01 5.51 -107.96 -0.59 -13.61 16 14 C 0.04 0.56 5.10 -3.83 -0.02 0.54 16 15 C 0.15 1.79 3.45 -27.88 -0.10 1.69 16 16 H 0.12 1.56 8.00 -51.93 -0.42 1.15 16 17 O -0.55 -6.44 12.80 -35.23 -0.45 -6.89 16 18 C -0.10 -1.05 4.97 -104.62 -0.52 -1.57 16 19 C -0.06 -0.48 9.32 -39.59 -0.37 -0.85 16 20 C -0.11 -0.79 10.05 -39.58 -0.40 -1.19 16 21 C -0.06 -0.53 9.56 -39.58 -0.38 -0.91 16 22 C -0.04 -0.48 6.85 -79.95 -0.55 -1.02 16 23 N 0.03 0.38 4.45 33.96 0.15 0.54 16 24 O -0.16 -2.25 18.45 -29.46 -0.54 -2.80 16 25 O -0.16 -2.23 18.45 -29.46 -0.54 -2.78 16 26 C -0.04 -0.48 9.18 -39.59 -0.36 -0.84 16 27 H 0.01 0.27 8.14 -51.93 -0.42 -0.15 16 28 H 0.05 1.00 7.50 -51.92 -0.39 0.61 16 29 H 0.05 1.25 7.37 -51.93 -0.38 0.87 16 30 H 0.09 2.25 6.12 -51.93 -0.32 1.93 16 31 H 0.01 0.18 7.43 -51.93 -0.39 -0.20 16 32 H 0.26 6.87 8.31 -40.82 -0.34 6.53 16 33 H 0.34 6.49 7.89 -39.29 -0.31 6.18 16 34 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 35 H 0.07 1.20 7.39 -51.93 -0.38 0.82 16 36 H 0.37 3.02 7.50 45.56 0.34 3.37 16 37 H 0.14 0.78 6.78 -52.49 -0.36 0.42 16 38 H 0.15 0.58 8.06 -52.49 -0.42 0.16 16 39 H 0.15 1.07 7.61 -52.49 -0.40 0.67 16 40 H 0.16 1.66 7.59 -52.49 -0.40 1.26 16 LS Contribution 339.58 15.07 5.12 5.12 Total: -1.00 -29.65 339.58 -8.86 -38.50 By element: Atomic # 1 Polarization: 10.72 SS G_CDS: -4.61 Total: 6.11 kcal Atomic # 6 Polarization: -12.96 SS G_CDS: -3.00 Total: -15.95 kcal Atomic # 7 Polarization: -37.08 SS G_CDS: 0.19 Total: -36.90 kcal Atomic # 8 Polarization: -10.92 SS G_CDS: -1.54 Total: -12.46 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -5.02 Total: 15.58 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -29.65 -8.86 -38.50 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000846988428.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.223 kcal (2) G-P(sol) polarization free energy of solvation -29.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.858 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.505 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.282 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds