Wall clock time and date at job start Tue Mar 31 2020 06:58:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52998 * 109.47377 * 2 1 4 4 H 1.09003 * 109.46984 * 177.96053 * 3 2 1 5 5 C 1.50700 * 109.47105 * 57.96104 * 3 2 1 6 6 H 1.08004 * 119.99510 * 240.00549 * 5 3 2 7 7 C 1.37873 * 120.00095 * 59.99757 * 5 3 2 8 8 N 1.31515 * 120.00339 * 359.97438 * 7 5 3 9 9 Si 1.86805 * 119.99683 * 180.02562 * 7 5 3 10 10 H 1.48496 * 109.47283 * 359.97438 * 9 7 5 11 11 H 1.48503 * 109.46673 * 119.99893 * 9 7 5 12 12 H 1.48497 * 109.47181 * 239.99907 * 9 7 5 13 13 N 1.46896 * 109.47065 * 297.95498 * 3 2 1 14 14 C 1.46896 * 111.00512 * 273.77971 * 13 3 2 15 15 C 1.52994 * 109.47508 * 174.61367 * 14 13 3 16 16 H 1.09000 * 109.46934 * 304.99962 * 15 14 13 17 17 O 1.42906 * 109.47118 * 64.99784 * 15 14 13 18 18 C 1.50703 * 109.47288 * 184.99810 * 15 14 13 19 19 C 1.38257 * 120.00089 * 279.72385 * 18 15 14 20 20 C 1.38209 * 120.00167 * 179.76333 * 19 18 15 21 21 C 1.38267 * 119.99711 * 0.51354 * 20 19 18 22 22 C 1.38213 * 119.99782 * 359.74450 * 21 20 19 23 23 N 1.48020 * 120.00023 * 179.97438 * 22 21 20 24 24 O 1.21799 * 120.00159 * 180.02562 * 23 22 21 25 25 O 1.21804 * 119.99761 * 0.02562 * 23 22 21 26 26 C 1.38208 * 119.99894 * 100.00034 * 18 15 14 27 27 H 1.08999 * 109.47443 * 174.45624 * 1 2 3 28 28 H 1.09007 * 109.46997 * 54.45297 * 1 2 3 29 29 H 1.09002 * 109.47303 * 294.45610 * 1 2 3 30 30 H 1.08995 * 109.47146 * 120.00371 * 2 1 3 31 31 H 1.09004 * 109.47074 * 239.99587 * 2 1 3 32 32 H 0.96994 * 120.00166 * 179.97438 * 8 7 5 33 33 H 1.00902 * 110.99619 * 149.82343 * 13 3 2 34 34 H 1.09006 * 109.46730 * 294.61177 * 14 13 3 35 35 H 1.08996 * 109.47238 * 54.60640 * 14 13 3 36 36 H 0.96704 * 114.00115 * 60.00068 * 17 15 14 37 37 H 1.08001 * 119.99857 * 0.02562 * 19 18 15 38 38 H 1.08000 * 120.00625 * 180.23134 * 20 19 18 39 39 H 1.08000 * 119.99944 * 179.72317 * 21 20 19 40 40 H 1.08001 * 119.99857 * 0.02562 * 26 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1294 1.4426 0.0366 5 6 1.4968 2.1673 1.2044 6 1 0.8797 3.0441 1.0740 7 6 1.7876 1.7112 2.4726 8 7 2.5385 0.6432 2.6313 9 14 1.1136 2.6094 3.9655 10 1 0.3031 3.7712 3.5200 11 1 0.2619 1.6851 4.7564 12 1 2.2406 3.0862 4.8068 13 7 1.5911 2.1205 -1.2234 14 6 2.5281 1.8850 -2.3299 15 6 1.9619 2.4912 -3.6155 16 1 0.9647 2.0906 -3.7976 17 8 1.8869 3.9118 -3.4794 18 6 2.8619 2.1443 -4.7734 19 6 4.0201 2.8677 -4.9897 20 6 4.8479 2.5464 -6.0487 21 6 4.5125 1.5082 -6.8981 22 6 3.3519 0.7885 -6.6850 23 7 2.9925 -0.3225 -7.5947 24 8 1.9695 -0.9564 -7.4071 25 8 3.7197 -0.6027 -8.5307 26 6 2.5265 1.1066 -5.6224 27 1 -0.3634 -1.0228 -0.0993 28 1 -0.3633 0.5975 -0.8362 29 1 -0.3634 0.4254 0.9355 30 1 1.8933 -0.5139 0.8899 31 1 1.8933 -0.5139 -0.8900 32 1 2.7433 0.3226 3.5235 33 1 1.4622 3.1083 -1.0627 34 1 3.4864 2.3508 -2.0999 35 1 2.6685 0.8126 -2.4651 36 1 2.7399 4.3368 -3.3151 37 1 4.2800 3.6812 -4.3286 38 1 5.7546 3.1090 -6.2155 39 1 5.1571 1.2600 -7.7283 40 1 1.6193 0.5446 -5.4563 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000846988428.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:58:04 Heat of formation + Delta-G solvation = -53.373180 kcal Electronic energy + Delta-G solvation = -23307.779304 eV Core-core repulsion = 19703.738425 eV Total energy + Delta-G solvation = -3604.040879 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -43.30632 -40.98725 -38.73400 -37.73475 -37.37857 -34.41970 -33.25035 -32.92490 -32.33492 -29.31532 -27.68820 -27.37773 -25.16108 -24.15224 -23.76128 -22.39917 -20.97658 -20.11568 -19.79411 -18.66513 -18.54186 -17.90624 -17.24087 -17.15591 -16.88260 -16.01132 -15.80169 -15.28801 -15.10675 -14.91559 -14.77579 -14.23751 -13.90527 -13.65427 -13.35694 -13.16245 -13.00399 -12.85125 -12.75270 -12.65129 -12.46530 -12.35795 -12.31320 -12.16645 -11.99478 -11.74488 -11.37077 -11.12896 -10.78671 -10.61303 -10.55002 -10.22419 -9.00451 -8.10280 -6.21911 -1.28220 -0.12541 0.25979 0.32739 1.40450 1.44396 1.54184 2.21519 2.42539 3.05865 3.19357 3.39531 3.44256 3.69213 3.75084 3.83982 3.93490 4.09547 4.17750 4.29391 4.54077 4.61194 4.66937 4.75499 4.79139 4.83496 4.93326 4.96896 5.05341 5.22585 5.29126 5.39230 5.45651 5.55818 5.71660 5.80118 5.88723 6.27457 6.42336 6.48285 6.71914 6.81152 7.04908 7.47298 8.94924 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.024337 B = 0.003249 C = 0.003056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1150.236049 B = 8616.202305 C = 9161.269943 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.100 4.100 3 C 0.223 3.777 4 H -0.033 1.033 5 C -0.521 4.521 6 H 0.058 0.942 7 C 0.017 3.983 8 N -0.917 5.917 9 Si 0.952 3.048 10 H -0.266 1.266 11 H -0.285 1.285 12 H -0.283 1.283 13 N -0.679 5.679 14 C 0.039 3.961 15 C 0.167 3.833 16 H 0.109 0.891 17 O -0.555 6.555 18 C -0.113 4.113 19 C -0.052 4.052 20 C -0.099 4.099 21 C -0.056 4.056 22 C -0.062 4.062 23 N 0.030 4.970 24 O -0.201 6.201 25 O -0.161 6.161 26 C -0.056 4.056 27 H 0.032 0.968 28 H 0.055 0.945 29 H 0.031 0.969 30 H 0.055 0.945 31 H 0.019 0.981 32 H 0.260 0.740 33 H 0.339 0.661 34 H 0.033 0.967 35 H 0.061 0.939 36 H 0.386 0.614 37 H 0.172 0.828 38 H 0.190 0.810 39 H 0.170 0.830 40 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.133 6.348 -17.013 19.167 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.138 4.138 3 C 0.115 3.885 4 H -0.015 1.015 5 C -0.560 4.560 6 H 0.076 0.924 7 C -0.182 4.182 8 N -0.557 5.557 9 Si 0.778 3.222 10 H -0.190 1.190 11 H -0.211 1.211 12 H -0.209 1.209 13 N -0.310 5.310 14 C -0.091 4.091 15 C 0.107 3.893 16 H 0.127 0.873 17 O -0.362 6.362 18 C -0.114 4.114 19 C -0.070 4.070 20 C -0.117 4.117 21 C -0.075 4.075 22 C -0.145 4.145 23 N 0.545 4.455 24 O -0.408 6.408 25 O -0.380 6.380 26 C -0.075 4.075 27 H 0.051 0.949 28 H 0.074 0.926 29 H 0.050 0.950 30 H 0.074 0.926 31 H 0.038 0.962 32 H 0.069 0.931 33 H 0.157 0.843 34 H 0.051 0.949 35 H 0.080 0.920 36 H 0.236 0.764 37 H 0.189 0.811 38 H 0.207 0.793 39 H 0.187 0.813 40 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 5.269 6.125 -16.700 18.552 hybrid contribution 0.849 0.067 1.136 1.419 sum 6.117 6.192 -15.564 17.833 Atomic orbital electron populations 1.21309 0.96089 0.98399 1.00736 1.21327 0.96277 0.97965 0.98273 1.18890 0.91109 0.92029 0.86482 1.01501 1.21482 1.31277 1.11950 0.91262 0.92367 1.25599 0.95384 0.95674 1.01515 1.70020 1.38560 1.24315 1.22760 0.85596 0.78119 0.78798 0.79669 1.19013 1.21095 1.20862 1.60456 1.47609 1.16649 1.06277 1.22563 0.94038 1.00603 0.91923 1.20651 0.98317 0.81489 0.88846 0.87324 1.86680 1.36981 1.18175 1.94378 1.20601 0.97812 0.95830 0.97191 1.21862 0.90950 0.97672 0.96518 1.21646 1.01397 0.95830 0.92856 1.21468 0.92669 0.93019 1.00322 1.21281 1.02102 0.94542 0.96620 1.43973 0.99504 1.01361 1.00684 1.94563 1.15383 1.51925 1.78968 1.94482 1.48846 1.72320 1.22375 1.20936 0.99227 0.96262 0.91061 0.94929 0.92581 0.95016 0.92632 0.96247 0.93093 0.84297 0.94918 0.92011 0.76363 0.81099 0.79301 0.81256 0.83535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.71 9.46 71.98 0.68 -4.02 16 2 C -0.10 -4.72 5.57 30.59 0.17 -4.55 16 3 C 0.22 10.59 2.30 44.17 0.10 10.69 16 4 H -0.03 -1.72 7.84 -2.39 -0.02 -1.74 16 5 C -0.52 -26.95 7.33 25.60 0.19 -26.77 16 6 H 0.06 2.98 7.60 -2.91 -0.02 2.96 16 7 C 0.02 0.93 5.30 84.65 0.45 1.38 16 8 N -0.92 -51.25 11.34 21.45 0.24 -51.01 16 9 Si 0.95 42.26 29.54 68.60 2.03 44.28 16 10 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 11 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 12 H -0.28 -12.34 7.11 99.48 0.71 -11.64 16 13 N -0.68 -25.68 5.51 -495.47 -2.73 -28.41 16 14 C 0.04 1.15 5.10 86.30 0.44 1.59 16 15 C 0.17 3.79 3.45 29.85 0.10 3.89 16 16 H 0.11 2.76 8.00 -2.39 -0.02 2.74 16 17 O -0.55 -11.79 12.80 -148.98 -1.91 -13.70 16 18 C -0.11 -2.08 4.97 -19.87 -0.10 -2.18 16 19 C -0.05 -0.62 9.32 22.27 0.21 -0.42 16 20 C -0.10 -0.93 10.05 22.27 0.22 -0.70 16 21 C -0.06 -0.80 9.56 22.27 0.21 -0.59 16 22 C -0.06 -1.34 6.85 36.37 0.25 -1.09 16 23 N 0.03 0.81 4.45 -46.46 -0.21 0.61 16 24 O -0.20 -6.09 18.45 18.89 0.35 -5.75 16 25 O -0.16 -4.30 18.45 18.88 0.35 -3.95 16 26 C -0.06 -1.19 9.18 22.27 0.20 -0.99 16 27 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 28 H 0.06 2.32 7.50 -2.38 -0.02 2.30 16 29 H 0.03 1.48 7.37 -2.39 -0.02 1.46 16 30 H 0.06 2.98 6.12 -2.39 -0.01 2.97 16 31 H 0.02 0.84 7.43 -2.38 -0.02 0.82 16 32 H 0.26 13.91 8.31 -92.71 -0.77 13.14 16 33 H 0.34 12.72 7.89 -89.69 -0.71 12.02 16 34 H 0.03 0.91 8.14 -2.38 -0.02 0.89 16 35 H 0.06 1.99 7.39 -2.39 -0.02 1.97 16 36 H 0.39 5.03 7.50 -74.05 -0.56 4.47 16 37 H 0.17 1.01 6.78 -2.91 -0.02 0.99 16 38 H 0.19 0.29 8.06 -2.91 -0.02 0.26 16 39 H 0.17 1.82 7.61 -2.91 -0.02 1.80 16 40 H 0.15 3.31 7.59 -2.91 -0.02 3.29 16 Total: -1.00 -65.46 339.58 1.07 -64.39 By element: Atomic # 1 Polarization: 17.48 SS G_CDS: -0.18 Total: 17.30 kcal Atomic # 6 Polarization: -26.89 SS G_CDS: 3.13 Total: -23.76 kcal Atomic # 7 Polarization: -76.12 SS G_CDS: -2.69 Total: -78.82 kcal Atomic # 8 Polarization: -22.18 SS G_CDS: -1.21 Total: -23.39 kcal Atomic # 14 Polarization: 42.26 SS G_CDS: 2.03 Total: 44.28 kcal Total: -65.46 1.07 -64.39 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000846988428.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.017 kcal (2) G-P(sol) polarization free energy of solvation -65.461 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.071 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.391 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds