Wall clock time and date at job start Tue Mar 31 2020 06:40:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.47232 * 2 1 4 4 C 1.53002 * 109.47092 * 239.99925 * 2 1 3 5 5 C 1.50696 * 109.47300 * 60.00169 * 4 2 1 6 6 O 1.20822 * 119.99851 * 0.02562 * 5 4 2 7 7 O 1.34230 * 120.00138 * 179.97438 * 5 4 2 8 8 C 1.45198 * 116.99780 * 179.97438 * 7 5 4 9 9 C 1.53000 * 109.46978 * 180.02562 * 8 7 5 10 10 C 1.50700 * 109.47459 * 179.97438 * 9 8 7 11 11 H 1.07997 * 119.99475 * 0.02562 * 10 9 8 12 12 C 1.37878 * 120.00266 * 179.97438 * 10 9 8 13 13 N 1.31513 * 119.99715 * 0.02562 * 12 10 9 14 14 Si 1.86799 * 119.99844 * 180.02562 * 12 10 9 15 15 H 1.48502 * 109.47193 * 0.02562 * 14 12 10 16 16 H 1.48503 * 109.46807 * 120.00235 * 14 12 10 17 17 H 1.48502 * 109.47065 * 240.00086 * 14 12 10 18 18 C 1.50706 * 109.47103 * 120.00197 * 2 1 3 19 19 C 1.38243 * 119.97334 * 119.72959 * 18 2 1 20 20 C 1.38205 * 120.01946 * 179.72574 * 19 18 2 21 21 C 1.38458 * 119.97681 * 0.56554 * 20 19 18 22 22 F 1.35095 * 120.02756 * 179.67909 * 21 20 19 23 23 C 1.38461 * 119.94484 * 359.70854 * 21 20 19 24 24 C 1.38193 * 119.97683 * 359.97438 * 23 21 20 25 25 H 1.08992 * 109.47280 * 299.99702 * 1 2 3 26 26 H 1.09002 * 109.46777 * 60.00422 * 1 2 3 27 27 H 1.09000 * 109.47140 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.47261 * 179.97438 * 3 2 1 29 29 H 1.09002 * 109.47153 * 299.99992 * 3 2 1 30 30 H 1.09001 * 109.46832 * 59.99801 * 3 2 1 31 31 H 1.09004 * 109.46930 * 180.02562 * 4 2 1 32 32 H 1.09004 * 109.47059 * 299.99666 * 4 2 1 33 33 H 1.08997 * 109.47571 * 300.00009 * 8 7 5 34 34 H 1.08998 * 109.47370 * 60.00250 * 8 7 5 35 35 H 1.09011 * 109.47087 * 300.00184 * 9 8 7 36 36 H 1.09003 * 109.47442 * 59.99654 * 9 8 7 37 37 H 0.96996 * 119.99695 * 179.97438 * 13 12 10 38 38 H 1.07997 * 119.99090 * 359.97438 * 19 18 2 39 39 H 1.08005 * 120.01097 * 180.24824 * 20 19 18 40 40 H 1.08008 * 120.00980 * 179.97438 * 23 21 20 41 41 H 1.08007 * 119.98852 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 1.5377 -0.0109 -2.4797 6 8 0.8435 0.9717 -2.3689 7 8 1.8624 -0.4692 -3.6988 8 6 1.3428 0.2647 -4.8389 9 6 1.8144 -0.4022 -6.1326 10 6 1.2746 0.3590 -7.3159 11 1 0.6573 1.2315 -7.1606 12 6 1.5697 -0.0577 -8.5967 13 7 2.3218 -1.1198 -8.7856 14 14 0.9011 0.8864 -10.0633 15 1 0.0891 2.0341 -9.5849 16 1 2.0312 1.3887 -10.8855 17 1 0.0521 -0.0127 -10.8855 18 6 2.0323 -0.7105 1.2305 19 6 2.8224 -1.8377 1.1030 20 6 3.2883 -2.4867 2.2307 21 6 2.9538 -2.0144 3.4885 22 9 3.4033 -2.6518 4.5916 23 6 2.1577 -0.8886 3.6149 24 6 1.6984 -0.2374 2.4858 25 1 -0.3633 0.5137 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3633 -1.0277 -0.0005 28 1 3.1300 1.4425 0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6766 1.9563 0.8900 31 1 3.1300 -0.7217 -1.2490 32 1 1.6767 -1.7490 -1.2492 33 1 0.2533 0.2632 -4.8061 34 1 1.7058 1.2919 -4.8059 35 1 2.9040 -0.4011 -6.1657 36 1 1.4510 -1.4293 -6.1654 37 1 2.5291 -1.4131 -9.6866 38 1 3.0790 -2.2089 0.1218 39 1 3.9089 -3.3650 2.1309 40 1 1.8957 -0.5195 4.5956 41 1 1.0777 0.6410 2.5841 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000869861228.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:40:42 Heat of formation + Delta-G solvation = -126.419621 kcal Electronic energy + Delta-G solvation = -22834.967475 eV Core-core repulsion = 19207.839103 eV Total energy + Delta-G solvation = -3627.128372 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.142 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -49.13695 -40.74973 -39.47975 -36.86837 -35.34047 -33.37654 -31.65412 -30.50684 -29.71904 -28.54542 -27.31294 -25.04588 -23.49759 -23.05590 -21.39326 -20.63281 -19.37695 -18.17982 -17.38307 -16.53524 -16.30912 -16.20292 -15.84197 -15.68659 -15.43865 -14.67739 -14.45388 -14.45078 -13.85971 -13.77654 -13.61144 -13.34628 -13.03728 -12.51633 -12.42584 -12.32677 -11.95911 -11.75479 -11.60870 -11.27508 -11.11022 -11.09364 -11.05938 -10.80630 -10.69942 -10.65765 -9.96904 -9.65510 -9.56572 -9.40068 -9.29510 -8.79993 -8.47183 -6.12978 -4.17324 0.85605 0.93579 2.52529 3.12493 3.25670 3.28771 3.33450 3.38399 3.98824 4.26401 4.35212 4.44940 4.59563 4.64179 4.78165 4.95564 4.98476 5.12687 5.23800 5.34602 5.41299 5.47076 5.59119 5.64887 5.67205 5.77501 5.82754 5.90155 5.91098 6.00043 6.04075 6.06453 6.25186 6.32061 6.35236 6.60013 6.61263 7.05188 7.54038 7.59500 7.84482 8.16765 8.24747 8.88595 9.47336 10.98601 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.038193 B = 0.002483 C = 0.002371 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 732.944502 B =11273.379821 C =11804.662546 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.008 4.008 3 C -0.153 4.153 4 C -0.113 4.113 5 C 0.457 3.543 6 O -0.510 6.510 7 O -0.358 6.358 8 C 0.076 3.924 9 C 0.024 3.976 10 C -0.526 4.526 11 H 0.060 0.940 12 C 0.060 3.940 13 N -0.890 5.890 14 Si 0.899 3.101 15 H -0.271 1.271 16 H -0.282 1.282 17 H -0.282 1.282 18 C -0.074 4.074 19 C -0.096 4.096 20 C -0.149 4.149 21 C 0.088 3.912 22 F -0.143 7.143 23 C -0.151 4.151 24 C -0.084 4.084 25 H 0.055 0.945 26 H 0.090 0.910 27 H 0.052 0.948 28 H 0.052 0.948 29 H 0.090 0.910 30 H 0.055 0.945 31 H 0.106 0.894 32 H 0.106 0.894 33 H 0.058 0.942 34 H 0.058 0.942 35 H 0.028 0.972 36 H 0.028 0.972 37 H 0.263 0.737 38 H 0.139 0.861 39 H 0.135 0.865 40 H 0.133 0.867 41 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.474 -0.682 24.022 24.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.008 4.008 3 C -0.210 4.210 4 C -0.151 4.151 5 C 0.301 3.699 6 O -0.401 6.401 7 O -0.274 6.274 8 C 0.003 3.997 9 C -0.013 4.013 10 C -0.564 4.564 11 H 0.078 0.922 12 C -0.142 4.142 13 N -0.528 5.528 14 Si 0.726 3.274 15 H -0.196 1.196 16 H -0.208 1.208 17 H -0.208 1.208 18 C -0.074 4.074 19 C -0.114 4.114 20 C -0.167 4.167 21 C 0.069 3.931 22 F -0.122 7.122 23 C -0.170 4.170 24 C -0.102 4.102 25 H 0.074 0.926 26 H 0.108 0.892 27 H 0.071 0.929 28 H 0.071 0.929 29 H 0.108 0.892 30 H 0.074 0.926 31 H 0.124 0.876 32 H 0.124 0.876 33 H 0.077 0.923 34 H 0.077 0.923 35 H 0.046 0.954 36 H 0.046 0.954 37 H 0.073 0.927 38 H 0.157 0.843 39 H 0.153 0.847 40 H 0.151 0.849 41 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 0.363 -0.525 23.902 23.910 hybrid contribution -0.217 0.307 -0.603 0.711 sum 0.146 -0.218 23.298 23.300 Atomic orbital electron populations 1.22167 0.92673 1.02146 1.04027 1.19262 0.96750 0.95385 0.89448 1.22168 1.00638 0.94176 1.04027 1.21595 1.03255 1.00744 0.89483 1.23397 0.77806 0.82960 0.85737 1.90504 1.36064 1.26240 1.87249 1.86530 1.69335 1.56353 1.15188 1.23626 0.98060 0.95227 0.82770 1.19176 0.97828 0.96825 0.87520 1.21015 1.32337 1.12727 0.90320 0.92218 1.24989 0.94985 0.95110 0.99114 1.69981 1.36917 1.24046 1.21896 0.86422 0.78804 0.79880 0.82249 1.19589 1.20821 1.20815 1.19914 0.97429 0.95486 0.94586 1.21148 0.96644 0.94745 0.98834 1.21173 1.02625 1.01940 0.91002 1.17747 0.98800 0.93794 0.82806 1.91491 1.87627 1.81122 1.51960 1.21123 0.99844 0.95793 1.00258 1.20839 0.98895 0.99556 0.90888 0.92553 0.89175 0.92927 0.92926 0.89166 0.92560 0.87555 0.87561 0.92319 0.92314 0.95391 0.95389 0.92747 0.84287 0.84680 0.84860 0.84946 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.62 7.99 37.16 0.30 -1.32 16 2 C -0.01 -0.08 0.60 -155.66 -0.09 -0.18 16 3 C -0.15 -1.62 7.99 37.16 0.30 -1.32 16 4 C -0.11 -1.24 3.54 -27.88 -0.10 -1.34 16 5 C 0.46 7.16 7.37 36.00 0.27 7.43 16 6 O -0.51 -8.76 11.10 -18.75 -0.21 -8.97 16 7 O -0.36 -6.78 10.22 -39.26 -0.40 -7.18 16 8 C 0.08 1.63 5.40 37.16 0.20 1.83 16 9 C 0.02 0.61 5.35 -27.88 -0.15 0.46 16 10 C -0.53 -14.62 9.11 -34.44 -0.31 -14.93 16 11 H 0.06 1.61 7.74 -52.49 -0.41 1.20 16 12 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 13 N -0.89 -26.16 13.29 55.43 0.74 -25.42 16 14 Si 0.90 21.20 29.54 -169.99 -5.02 16.18 16 15 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 16 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 17 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 18 C -0.07 -0.67 4.76 -104.62 -0.50 -1.17 16 19 C -0.10 -0.82 8.97 -39.59 -0.36 -1.18 16 20 C -0.15 -1.29 10.03 -39.51 -0.40 -1.68 16 21 C 0.09 0.83 7.30 -39.42 -0.29 0.54 16 22 F -0.14 -1.47 17.27 2.25 0.04 -1.43 16 23 C -0.15 -1.27 10.03 -39.52 -0.40 -1.67 16 24 C -0.08 -0.70 8.71 -39.60 -0.34 -1.05 16 25 H 0.06 0.51 7.39 -51.93 -0.38 0.13 16 26 H 0.09 1.17 5.52 -51.93 -0.29 0.88 16 27 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 28 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 29 H 0.09 1.17 5.52 -51.93 -0.29 0.89 16 30 H 0.06 0.51 7.39 -51.93 -0.38 0.13 16 31 H 0.11 1.00 7.52 -51.93 -0.39 0.61 16 32 H 0.11 1.00 7.50 -51.93 -0.39 0.61 16 33 H 0.06 1.25 8.13 -51.93 -0.42 0.83 16 34 H 0.06 1.25 8.13 -51.93 -0.42 0.83 16 35 H 0.03 0.75 8.14 -51.92 -0.42 0.33 16 36 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 38 H 0.14 1.00 5.89 -52.49 -0.31 0.69 16 39 H 0.14 0.95 8.06 -52.48 -0.42 0.53 16 40 H 0.13 0.88 8.06 -52.48 -0.42 0.46 16 41 H 0.13 0.92 7.10 -52.48 -0.37 0.55 16 LS Contribution 340.17 15.07 5.13 5.13 Total: -1.00 -30.37 340.17 -7.42 -37.80 By element: Atomic # 1 Polarization: 3.61 SS G_CDS: -5.72 Total: -2.11 kcal Atomic # 6 Polarization: -12.01 SS G_CDS: -1.97 Total: -13.98 kcal Atomic # 7 Polarization: -26.16 SS G_CDS: 0.74 Total: -25.42 kcal Atomic # 8 Polarization: -15.54 SS G_CDS: -0.61 Total: -16.15 kcal Atomic # 9 Polarization: -1.47 SS G_CDS: 0.04 Total: -1.43 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -30.37 -7.42 -37.80 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000869861228.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.623 kcal (2) G-P(sol) polarization free energy of solvation -30.373 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.424 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.796 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.420 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds