Wall clock time and date at job start Tue Mar 31 2020 06:40:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.47232 * 2 1 4 4 C 1.53002 * 109.47092 * 239.99925 * 2 1 3 5 5 C 1.50696 * 109.47300 * 60.00169 * 4 2 1 6 6 O 1.20822 * 119.99851 * 0.02562 * 5 4 2 7 7 O 1.34230 * 120.00138 * 179.97438 * 5 4 2 8 8 C 1.45198 * 116.99780 * 179.97438 * 7 5 4 9 9 C 1.53000 * 109.46978 * 180.02562 * 8 7 5 10 10 C 1.50700 * 109.47459 * 179.97438 * 9 8 7 11 11 H 1.07997 * 119.99475 * 0.02562 * 10 9 8 12 12 C 1.37878 * 120.00266 * 179.97438 * 10 9 8 13 13 N 1.31513 * 119.99715 * 0.02562 * 12 10 9 14 14 Si 1.86799 * 119.99844 * 180.02562 * 12 10 9 15 15 H 1.48502 * 109.47193 * 0.02562 * 14 12 10 16 16 H 1.48503 * 109.46807 * 120.00235 * 14 12 10 17 17 H 1.48502 * 109.47065 * 240.00086 * 14 12 10 18 18 C 1.50706 * 109.47103 * 120.00197 * 2 1 3 19 19 C 1.38243 * 119.97334 * 119.72959 * 18 2 1 20 20 C 1.38205 * 120.01946 * 179.72574 * 19 18 2 21 21 C 1.38458 * 119.97681 * 0.56554 * 20 19 18 22 22 F 1.35095 * 120.02756 * 179.67909 * 21 20 19 23 23 C 1.38461 * 119.94484 * 359.70854 * 21 20 19 24 24 C 1.38193 * 119.97683 * 359.97438 * 23 21 20 25 25 H 1.08992 * 109.47280 * 299.99702 * 1 2 3 26 26 H 1.09002 * 109.46777 * 60.00422 * 1 2 3 27 27 H 1.09000 * 109.47140 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.47261 * 179.97438 * 3 2 1 29 29 H 1.09002 * 109.47153 * 299.99992 * 3 2 1 30 30 H 1.09001 * 109.46832 * 59.99801 * 3 2 1 31 31 H 1.09004 * 109.46930 * 180.02562 * 4 2 1 32 32 H 1.09004 * 109.47059 * 299.99666 * 4 2 1 33 33 H 1.08997 * 109.47571 * 300.00009 * 8 7 5 34 34 H 1.08998 * 109.47370 * 60.00250 * 8 7 5 35 35 H 1.09011 * 109.47087 * 300.00184 * 9 8 7 36 36 H 1.09003 * 109.47442 * 59.99654 * 9 8 7 37 37 H 0.96996 * 119.99695 * 179.97438 * 13 12 10 38 38 H 1.07997 * 119.99090 * 359.97438 * 19 18 2 39 39 H 1.08005 * 120.01097 * 180.24824 * 20 19 18 40 40 H 1.08008 * 120.00980 * 179.97438 * 23 21 20 41 41 H 1.08007 * 119.98852 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 1.5377 -0.0109 -2.4797 6 8 0.8435 0.9717 -2.3689 7 8 1.8624 -0.4692 -3.6988 8 6 1.3428 0.2647 -4.8389 9 6 1.8144 -0.4022 -6.1326 10 6 1.2746 0.3590 -7.3159 11 1 0.6573 1.2315 -7.1606 12 6 1.5697 -0.0577 -8.5967 13 7 2.3218 -1.1198 -8.7856 14 14 0.9011 0.8864 -10.0633 15 1 0.0891 2.0341 -9.5849 16 1 2.0312 1.3887 -10.8855 17 1 0.0521 -0.0127 -10.8855 18 6 2.0323 -0.7105 1.2305 19 6 2.8224 -1.8377 1.1030 20 6 3.2883 -2.4867 2.2307 21 6 2.9538 -2.0144 3.4885 22 9 3.4033 -2.6518 4.5916 23 6 2.1577 -0.8886 3.6149 24 6 1.6984 -0.2374 2.4858 25 1 -0.3633 0.5137 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3633 -1.0277 -0.0005 28 1 3.1300 1.4425 0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6766 1.9563 0.8900 31 1 3.1300 -0.7217 -1.2490 32 1 1.6767 -1.7490 -1.2492 33 1 0.2533 0.2632 -4.8061 34 1 1.7058 1.2919 -4.8059 35 1 2.9040 -0.4011 -6.1657 36 1 1.4510 -1.4293 -6.1654 37 1 2.5291 -1.4131 -9.6866 38 1 3.0790 -2.2089 0.1218 39 1 3.9089 -3.3650 2.1309 40 1 1.8957 -0.5195 4.5956 41 1 1.0777 0.6410 2.5841 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000869861228.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:40:42 Heat of formation + Delta-G solvation = -140.737288 kcal Electronic energy + Delta-G solvation = -22835.588336 eV Core-core repulsion = 19207.839103 eV Total energy + Delta-G solvation = -3627.749233 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.142 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -49.86155 -41.85329 -40.42791 -38.09373 -36.41082 -35.43765 -32.49971 -32.19431 -30.52534 -29.55141 -28.14929 -26.95460 -24.38287 -23.73643 -23.05566 -22.02819 -20.27136 -19.11795 -18.64795 -18.09563 -17.60702 -17.36425 -16.91120 -16.56457 -16.55031 -16.16104 -15.53843 -15.36253 -14.95411 -14.78132 -14.46154 -14.38699 -14.17366 -13.93743 -13.57066 -13.50596 -13.12561 -12.93589 -12.78522 -12.65917 -12.56132 -12.30607 -12.23002 -12.15353 -11.90396 -11.74719 -11.49891 -11.43614 -11.35850 -10.90949 -10.61619 -10.02415 -9.49369 -8.27229 -6.40092 0.17639 0.31334 1.26987 1.41249 1.41529 1.55028 1.82613 2.40401 2.63257 3.07380 3.32865 3.44686 3.61943 3.92792 3.95838 3.99204 4.01344 4.25825 4.26117 4.31628 4.36244 4.49666 4.59167 4.64213 4.73201 4.85207 4.95202 4.96784 5.02850 5.05097 5.14431 5.19371 5.26304 5.30644 5.41973 5.44980 5.48194 5.60600 5.68543 5.84951 5.95836 6.07304 6.73536 6.85944 7.29863 8.85611 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.038193 B = 0.002483 C = 0.002371 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 732.944502 B =11273.379821 C =11804.662546 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.001 4.001 3 C -0.152 4.152 4 C -0.108 4.108 5 C 0.453 3.547 6 O -0.525 6.525 7 O -0.370 6.370 8 C 0.092 3.908 9 C 0.029 3.971 10 C -0.548 4.548 11 H 0.064 0.936 12 C 0.005 3.995 13 N -0.927 5.927 14 Si 0.972 3.028 15 H -0.262 1.262 16 H -0.275 1.275 17 H -0.275 1.275 18 C -0.077 4.077 19 C -0.099 4.099 20 C -0.152 4.152 21 C 0.070 3.930 22 F -0.152 7.152 23 C -0.152 4.152 24 C -0.085 4.085 25 H 0.070 0.930 26 H 0.063 0.937 27 H 0.057 0.943 28 H 0.057 0.943 29 H 0.063 0.937 30 H 0.070 0.930 31 H 0.127 0.873 32 H 0.127 0.873 33 H 0.059 0.941 34 H 0.059 0.941 35 H 0.006 0.994 36 H 0.006 0.994 37 H 0.268 0.732 38 H 0.153 0.847 39 H 0.148 0.852 40 H 0.149 0.851 41 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.173 -0.262 24.925 24.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.001 4.001 3 C -0.209 4.209 4 C -0.145 4.145 5 C 0.298 3.702 6 O -0.415 6.415 7 O -0.286 6.286 8 C 0.019 3.981 9 C -0.008 4.008 10 C -0.586 4.586 11 H 0.083 0.917 12 C -0.194 4.194 13 N -0.566 5.566 14 Si 0.796 3.204 15 H -0.186 1.186 16 H -0.201 1.201 17 H -0.201 1.201 18 C -0.078 4.078 19 C -0.117 4.117 20 C -0.171 4.171 21 C 0.051 3.949 22 F -0.131 7.131 23 C -0.171 4.171 24 C -0.103 4.103 25 H 0.089 0.911 26 H 0.081 0.919 27 H 0.076 0.924 28 H 0.076 0.924 29 H 0.082 0.918 30 H 0.089 0.911 31 H 0.145 0.855 32 H 0.145 0.855 33 H 0.077 0.923 34 H 0.077 0.923 35 H 0.024 0.976 36 H 0.024 0.976 37 H 0.076 0.924 38 H 0.171 0.829 39 H 0.166 0.834 40 H 0.167 0.833 41 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 0.058 -0.098 24.833 24.833 hybrid contribution -0.112 0.161 -0.779 0.804 sum -0.055 0.063 24.053 24.054 Atomic orbital electron populations 1.22124 0.93092 1.02278 1.03403 1.19168 0.96366 0.95116 0.89477 1.22125 1.00935 0.94431 1.03404 1.21795 1.04444 1.01202 0.87071 1.24345 0.77332 0.82995 0.85539 1.90521 1.36693 1.27061 1.87206 1.86519 1.69807 1.56453 1.15872 1.23080 0.97781 0.94720 0.82502 1.18985 0.96221 0.95856 0.89724 1.21411 1.32625 1.13147 0.91426 0.91741 1.25960 0.95075 0.96000 1.02323 1.70097 1.38038 1.25590 1.22921 0.85289 0.78311 0.78615 0.78171 1.18613 1.20091 1.20078 1.19812 0.97976 0.95780 0.94186 1.21310 0.96381 0.94532 0.99469 1.21357 1.02627 1.02362 0.90752 1.18018 0.99529 0.94425 0.82901 1.91469 1.87830 1.81364 1.52405 1.21322 0.99282 0.95344 1.01133 1.21006 0.98818 0.99922 0.90509 0.91067 0.91850 0.92417 0.92419 0.91841 0.91073 0.85520 0.85517 0.92299 0.92296 0.97609 0.97606 0.92352 0.82941 0.83416 0.83295 0.83502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.98 7.99 71.98 0.58 -2.40 16 2 C 0.00 -0.02 0.60 -52.93 -0.03 -0.05 16 3 C -0.15 -2.98 7.99 71.98 0.58 -2.40 16 4 C -0.11 -2.17 3.54 29.85 0.11 -2.06 16 5 C 0.45 13.92 7.37 71.23 0.53 14.44 16 6 O -0.52 -17.97 11.10 21.98 0.24 -17.72 16 7 O -0.37 -14.04 10.22 -51.41 -0.53 -14.56 16 8 C 0.09 4.04 5.40 71.98 0.39 4.43 16 9 C 0.03 1.56 5.35 29.85 0.16 1.72 16 10 C -0.55 -30.84 9.11 25.60 0.23 -30.61 16 11 H 0.06 3.48 7.74 -2.91 -0.02 3.45 16 12 C 0.01 0.30 5.46 84.66 0.46 0.76 16 13 N -0.93 -55.21 13.29 21.45 0.28 -54.93 16 14 Si 0.97 43.32 29.54 68.60 2.03 45.35 16 15 H -0.26 -11.19 7.11 99.48 0.71 -10.48 16 16 H -0.28 -11.90 7.11 99.48 0.71 -11.20 16 17 H -0.28 -11.90 7.11 99.48 0.71 -11.19 16 18 C -0.08 -1.21 4.76 -19.86 -0.09 -1.30 16 19 C -0.10 -1.45 8.97 22.26 0.20 -1.25 16 20 C -0.15 -2.33 10.03 22.31 0.22 -2.11 16 21 C 0.07 1.21 7.30 22.38 0.16 1.37 16 22 F -0.15 -2.94 17.27 44.97 0.78 -2.17 16 23 C -0.15 -2.23 10.03 22.31 0.22 -2.00 16 24 C -0.08 -1.20 8.71 22.26 0.19 -1.01 16 25 H 0.07 1.15 7.39 -2.39 -0.02 1.13 16 26 H 0.06 1.61 5.52 -2.39 -0.01 1.60 16 27 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 28 H 0.06 1.05 8.14 -2.38 -0.02 1.04 16 29 H 0.06 1.61 5.52 -2.39 -0.01 1.60 16 30 H 0.07 1.15 7.39 -2.39 -0.02 1.13 16 31 H 0.13 2.07 7.52 -2.38 -0.02 2.06 16 32 H 0.13 2.07 7.50 -2.39 -0.02 2.05 16 33 H 0.06 2.54 8.13 -2.39 -0.02 2.52 16 34 H 0.06 2.54 8.13 -2.39 -0.02 2.53 16 35 H 0.01 0.31 8.14 -2.38 -0.02 0.29 16 36 H 0.01 0.31 8.14 -2.39 -0.02 0.29 16 37 H 0.27 14.81 8.31 -92.71 -0.77 14.04 16 38 H 0.15 1.74 5.89 -2.91 -0.02 1.72 16 39 H 0.15 1.79 8.06 -2.91 -0.02 1.77 16 40 H 0.15 1.63 8.06 -2.91 -0.02 1.60 16 41 H 0.15 1.60 7.10 -2.91 -0.02 1.58 16 Total: -1.00 -65.66 340.17 7.74 -57.92 By element: Atomic # 1 Polarization: 7.56 SS G_CDS: 1.03 Total: 8.59 kcal Atomic # 6 Polarization: -26.38 SS G_CDS: 3.90 Total: -22.47 kcal Atomic # 7 Polarization: -55.21 SS G_CDS: 0.28 Total: -54.93 kcal Atomic # 8 Polarization: -32.00 SS G_CDS: -0.28 Total: -32.29 kcal Atomic # 9 Polarization: -2.94 SS G_CDS: 0.78 Total: -2.17 kcal Atomic # 14 Polarization: 43.32 SS G_CDS: 2.03 Total: 45.35 kcal Total: -65.66 7.74 -57.92 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000869861228.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.817 kcal (2) G-P(sol) polarization free energy of solvation -65.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.476 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.739 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.920 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds