Wall clock time and date at job start Tue Mar 31 2020 07:39:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.50697 * 109.47466 * 239.99773 * 2 1 3 5 5 H 1.07999 * 120.00055 * 240.00165 * 4 2 1 6 6 C 1.37878 * 119.99687 * 60.00188 * 4 2 1 7 7 N 1.31511 * 120.00458 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 119.99926 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.47262 * 0.02562 * 8 6 4 10 10 H 1.48505 * 109.46882 * 119.99668 * 8 6 4 11 11 H 1.48493 * 109.47394 * 239.99732 * 8 6 4 12 12 O 1.45206 * 109.47226 * 119.99431 * 2 1 3 13 13 C 1.34225 * 117.00211 * 270.00418 * 12 2 1 14 14 O 1.20825 * 120.00325 * 359.97438 * 13 12 2 15 15 C 1.50704 * 119.99598 * 179.97438 * 13 12 2 16 16 H 1.08995 * 109.47275 * 300.00351 * 15 13 12 17 17 C 1.53005 * 109.47044 * 60.00302 * 15 13 12 18 18 C 1.52998 * 109.46817 * 179.97438 * 15 13 12 19 19 C 1.52999 * 109.46914 * 175.00214 * 18 15 13 20 20 C 1.50707 * 109.46931 * 180.02562 * 19 18 15 21 21 C 1.38247 * 119.97346 * 269.72606 * 20 19 18 22 22 C 1.38201 * 120.02159 * 179.72914 * 21 20 19 23 23 C 1.38459 * 119.97528 * 0.56717 * 22 21 20 24 24 F 1.35099 * 120.02491 * 179.68759 * 23 22 21 25 25 C 1.38453 * 119.94784 * 359.70779 * 23 22 21 26 26 C 1.38199 * 119.97581 * 359.97438 * 25 23 22 27 27 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 29 29 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 30 30 H 0.96999 * 120.00480 * 179.97438 * 7 6 4 31 31 H 1.08995 * 109.47019 * 179.97438 * 17 15 13 32 32 H 1.09002 * 109.47191 * 299.99637 * 17 15 13 33 33 H 1.09000 * 109.47280 * 59.99225 * 17 15 13 34 34 H 1.09000 * 109.47810 * 295.00366 * 18 15 13 35 35 H 1.09000 * 109.46867 * 55.00270 * 18 15 13 36 36 H 1.08997 * 109.47450 * 299.99820 * 19 18 15 37 37 H 1.09000 * 109.47307 * 60.00326 * 19 18 15 38 38 H 1.08002 * 119.98646 * 359.97438 * 21 20 19 39 39 H 1.08001 * 120.00825 * 180.25523 * 22 21 20 40 40 H 1.08005 * 120.01126 * 179.97438 * 25 23 22 41 41 H 1.08002 * 119.98198 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1312 6 6 1.6993 -0.2393 -2.4827 7 7 0.9428 0.8296 -2.6034 8 14 2.3215 -1.1204 -4.0079 9 1 3.1456 -2.2877 -3.6037 10 1 1.1661 -1.5867 -4.8160 11 1 3.1467 -0.1875 -4.8164 12 8 2.0140 -0.6844 1.1857 13 6 2.2171 0.0641 2.2812 14 8 1.9981 1.2520 2.2504 15 6 2.7182 -0.5771 3.5496 16 1 2.0088 -1.3368 3.8775 17 6 4.0783 -1.2278 3.2892 18 6 2.8635 0.4892 4.6371 19 6 3.2520 -0.1789 5.9576 20 6 3.3945 0.8714 7.0290 21 6 4.6193 1.4743 7.2466 22 6 4.7498 2.4416 8.2251 23 6 3.6560 2.7982 8.9954 24 9 3.7839 3.7391 9.9564 25 6 2.4312 2.1896 8.7804 26 6 2.3015 1.2274 7.7969 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 0.5139 0.8900 30 1 0.7089 1.1612 -3.4844 31 1 4.4409 -1.6912 4.2066 32 1 3.9753 -1.9874 2.5142 33 1 4.7877 -0.4681 2.9611 34 1 3.6375 1.2001 4.3480 35 1 1.9161 1.0139 4.7603 36 1 2.4779 -0.8896 6.2468 37 1 4.1994 -0.7036 5.8344 38 1 5.4736 1.1922 6.6491 39 1 5.7058 2.9154 8.3921 40 1 1.5773 2.4668 9.3809 41 1 1.3460 0.7528 7.6288 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000870204316.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:39:36 Heat of formation + Delta-G solvation = -136.499372 kcal Electronic energy + Delta-G solvation = -22657.590539 eV Core-core repulsion = 19030.025076 eV Total energy + Delta-G solvation = -3627.565463 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.142 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -49.10037 -39.84450 -39.32013 -36.31212 -35.15869 -33.27353 -32.13650 -31.38500 -29.56505 -28.07872 -25.40001 -25.22980 -23.31342 -23.22397 -21.45780 -20.54880 -19.20497 -17.90520 -17.00643 -16.65072 -16.52580 -15.94370 -15.79567 -15.50239 -15.11983 -14.59455 -14.37145 -14.17447 -13.79718 -13.63686 -13.37365 -13.13222 -12.76271 -12.54469 -12.04719 -11.95308 -11.80819 -11.67306 -11.44681 -11.25405 -11.16097 -11.05773 -10.82706 -10.79732 -10.66187 -10.35681 -10.28796 -9.56483 -9.46335 -9.36172 -8.89484 -8.74746 -8.50051 -6.19012 -4.25843 0.89166 0.97978 3.02941 3.22690 3.28744 3.30727 3.34642 3.69255 4.03140 4.32401 4.44273 4.47979 4.64240 4.86621 5.01321 5.03774 5.09933 5.13299 5.17116 5.33624 5.41963 5.52953 5.64187 5.76410 5.81529 5.86896 5.91967 5.97288 5.97918 6.05808 6.28058 6.34526 6.40652 6.64253 6.65561 6.88273 6.91965 7.18901 7.60159 7.73109 7.94779 8.14551 8.65428 8.89917 9.39799 10.88486 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.034550 B = 0.002521 C = 0.002473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 810.230628 B =11103.359863 C =11319.024039 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.214 3.786 3 H 0.045 0.955 4 C -0.519 4.519 5 H 0.069 0.931 6 C 0.061 3.939 7 N -0.889 5.889 8 Si 0.911 3.089 9 H -0.270 1.270 10 H -0.281 1.281 11 H -0.282 1.282 12 O -0.355 6.355 13 C 0.454 3.546 14 O -0.523 6.523 15 C -0.086 4.086 16 H 0.102 0.898 17 C -0.145 4.145 18 C -0.099 4.099 19 C -0.082 4.082 20 C -0.085 4.085 21 C -0.088 4.088 22 C -0.152 4.152 23 C 0.088 3.912 24 F -0.143 7.143 25 C -0.152 4.152 26 C -0.088 4.088 27 H 0.036 0.964 28 H 0.099 0.901 29 H 0.015 0.985 30 H 0.265 0.735 31 H 0.065 0.935 32 H 0.072 0.928 33 H 0.059 0.941 34 H 0.073 0.927 35 H 0.074 0.926 36 H 0.076 0.924 37 H 0.080 0.920 38 H 0.133 0.867 39 H 0.134 0.866 40 H 0.134 0.866 41 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.476 -1.732 20.921 21.695 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.162 3.838 3 H 0.063 0.937 4 C -0.557 4.557 5 H 0.087 0.913 6 C -0.141 4.141 7 N -0.527 5.527 8 Si 0.738 3.262 9 H -0.195 1.195 10 H -0.207 1.207 11 H -0.208 1.208 12 O -0.272 6.272 13 C 0.296 3.704 14 O -0.413 6.413 15 C -0.105 4.105 16 H 0.120 0.880 17 C -0.202 4.202 18 C -0.136 4.136 19 C -0.119 4.119 20 C -0.085 4.085 21 C -0.106 4.106 22 C -0.171 4.171 23 C 0.069 3.931 24 F -0.122 7.122 25 C -0.170 4.170 26 C -0.106 4.106 27 H 0.055 0.945 28 H 0.117 0.883 29 H 0.034 0.966 30 H 0.075 0.925 31 H 0.084 0.916 32 H 0.091 0.909 33 H 0.078 0.922 34 H 0.091 0.909 35 H 0.092 0.908 36 H 0.095 0.905 37 H 0.098 0.902 38 H 0.151 0.849 39 H 0.152 0.848 40 H 0.152 0.848 41 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 5.316 -1.233 20.741 21.446 hybrid contribution 0.128 0.051 -0.713 0.727 sum 5.443 -1.182 20.027 20.787 Atomic orbital electron populations 1.22157 0.97645 1.00047 1.01366 1.20617 0.91341 0.93905 0.77968 0.93682 1.21064 1.32348 1.13403 0.88907 0.91285 1.24900 0.94962 0.95113 0.99105 1.69908 1.36140 1.22629 1.24051 0.86229 0.78631 0.79493 0.81836 1.19474 1.20721 1.20762 1.86475 1.75649 1.43664 1.21370 1.23356 0.74754 0.85976 0.86289 1.90594 1.48837 1.17053 1.84786 1.20996 0.99583 0.98809 0.91115 0.88006 1.21795 0.94608 1.01310 1.02464 1.21452 1.03464 0.97052 0.91650 1.20716 1.03132 0.95687 0.92400 1.20008 0.93274 0.98212 0.97041 1.20968 0.97689 0.95201 0.96703 1.21148 0.98384 1.00064 0.97457 1.17735 0.95173 0.90541 0.89691 1.91490 1.96658 1.62666 1.61402 1.21148 0.96505 0.98702 1.00691 1.20972 0.98917 0.96430 0.94250 0.94464 0.88280 0.96592 0.92464 0.91573 0.90884 0.92181 0.90860 0.90758 0.90492 0.90176 0.84869 0.84837 0.84837 0.84880 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.94 9.33 37.16 0.35 -3.59 16 2 C 0.21 5.76 2.56 -27.89 -0.07 5.69 16 3 H 0.05 1.35 7.16 -51.93 -0.37 0.97 16 4 C -0.52 -14.56 8.90 -34.44 -0.31 -14.86 16 5 H 0.07 1.90 7.81 -52.49 -0.41 1.49 16 6 C 0.06 1.69 5.30 -17.82 -0.09 1.59 16 7 N -0.89 -25.34 11.32 55.43 0.63 -24.72 16 8 Si 0.91 21.01 29.54 -169.99 -5.02 15.99 16 9 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 10 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 11 H -0.28 -6.44 7.11 56.52 0.40 -6.03 16 12 O -0.36 -8.35 9.77 -39.25 -0.38 -8.74 16 13 C 0.45 9.23 7.23 36.01 0.26 9.49 16 14 O -0.52 -12.21 15.14 -18.75 -0.28 -12.50 16 15 C -0.09 -1.18 2.83 -91.77 -0.26 -1.44 16 16 H 0.10 1.21 8.14 -51.93 -0.42 0.79 16 17 C -0.14 -1.73 8.88 37.16 0.33 -1.40 16 18 C -0.10 -1.19 4.01 -26.73 -0.11 -1.29 16 19 C -0.08 -0.71 5.10 -27.88 -0.14 -0.85 16 20 C -0.09 -0.79 5.13 -104.61 -0.54 -1.32 16 21 C -0.09 -0.78 9.70 -39.59 -0.38 -1.16 16 22 C -0.15 -1.40 10.03 -39.51 -0.40 -1.79 16 23 C 0.09 0.90 7.30 -39.42 -0.29 0.61 16 24 F -0.14 -1.57 17.27 2.25 0.04 -1.53 16 25 C -0.15 -1.41 10.03 -39.52 -0.40 -1.80 16 26 C -0.09 -0.79 9.70 -39.59 -0.38 -1.17 16 27 H 0.04 0.89 8.14 -51.93 -0.42 0.47 16 28 H 0.10 2.70 6.07 -51.93 -0.32 2.38 16 29 H 0.01 0.37 8.14 -51.93 -0.42 -0.06 16 30 H 0.27 7.10 8.31 -40.82 -0.34 6.76 16 31 H 0.07 0.57 6.56 -51.93 -0.34 0.23 16 32 H 0.07 0.96 8.11 -51.93 -0.42 0.54 16 33 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 35 H 0.07 0.99 7.95 -51.93 -0.41 0.58 16 36 H 0.08 0.57 8.08 -51.93 -0.42 0.15 16 37 H 0.08 0.59 6.51 -51.93 -0.34 0.25 16 38 H 0.13 0.95 8.06 -52.49 -0.42 0.52 16 39 H 0.13 1.00 8.06 -52.49 -0.42 0.57 16 40 H 0.13 1.01 8.06 -52.48 -0.42 0.58 16 41 H 0.13 0.97 8.06 -52.49 -0.42 0.55 16 LS Contribution 349.88 15.07 5.27 5.27 Total: -1.00 -31.46 349.88 -8.15 -39.61 By element: Atomic # 1 Polarization: 5.89 SS G_CDS: -5.97 Total: -0.08 kcal Atomic # 6 Polarization: -10.87 SS G_CDS: -2.43 Total: -13.30 kcal Atomic # 7 Polarization: -25.34 SS G_CDS: 0.63 Total: -24.72 kcal Atomic # 8 Polarization: -20.57 SS G_CDS: -0.67 Total: -21.23 kcal Atomic # 9 Polarization: -1.57 SS G_CDS: 0.04 Total: -1.53 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.99 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -31.46 -8.15 -39.61 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000870204316.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.893 kcal (2) G-P(sol) polarization free energy of solvation -31.457 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.606 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.499 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds