Wall clock time and date at job start Tue Mar 31 2020 07:39:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.50697 * 109.47466 * 239.99773 * 2 1 3 5 5 H 1.07999 * 120.00055 * 240.00165 * 4 2 1 6 6 C 1.37878 * 119.99687 * 60.00188 * 4 2 1 7 7 N 1.31511 * 120.00458 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 119.99926 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.47262 * 0.02562 * 8 6 4 10 10 H 1.48505 * 109.46882 * 119.99668 * 8 6 4 11 11 H 1.48493 * 109.47394 * 239.99732 * 8 6 4 12 12 O 1.45206 * 109.47226 * 119.99431 * 2 1 3 13 13 C 1.34225 * 117.00211 * 270.00418 * 12 2 1 14 14 O 1.20825 * 120.00325 * 359.97438 * 13 12 2 15 15 C 1.50704 * 119.99598 * 179.97438 * 13 12 2 16 16 H 1.08995 * 109.47275 * 300.00351 * 15 13 12 17 17 C 1.53005 * 109.47044 * 60.00302 * 15 13 12 18 18 C 1.52998 * 109.46817 * 179.97438 * 15 13 12 19 19 C 1.52999 * 109.46914 * 175.00214 * 18 15 13 20 20 C 1.50707 * 109.46931 * 180.02562 * 19 18 15 21 21 C 1.38247 * 119.97346 * 269.72606 * 20 19 18 22 22 C 1.38201 * 120.02159 * 179.72914 * 21 20 19 23 23 C 1.38459 * 119.97528 * 0.56717 * 22 21 20 24 24 F 1.35099 * 120.02491 * 179.68759 * 23 22 21 25 25 C 1.38453 * 119.94784 * 359.70779 * 23 22 21 26 26 C 1.38199 * 119.97581 * 359.97438 * 25 23 22 27 27 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 29 29 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 30 30 H 0.96999 * 120.00480 * 179.97438 * 7 6 4 31 31 H 1.08995 * 109.47019 * 179.97438 * 17 15 13 32 32 H 1.09002 * 109.47191 * 299.99637 * 17 15 13 33 33 H 1.09000 * 109.47280 * 59.99225 * 17 15 13 34 34 H 1.09000 * 109.47810 * 295.00366 * 18 15 13 35 35 H 1.09000 * 109.46867 * 55.00270 * 18 15 13 36 36 H 1.08997 * 109.47450 * 299.99820 * 19 18 15 37 37 H 1.09000 * 109.47307 * 60.00326 * 19 18 15 38 38 H 1.08002 * 119.98646 * 359.97438 * 21 20 19 39 39 H 1.08001 * 120.00825 * 180.25523 * 22 21 20 40 40 H 1.08005 * 120.01126 * 179.97438 * 25 23 22 41 41 H 1.08002 * 119.98198 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1312 6 6 1.6993 -0.2393 -2.4827 7 7 0.9428 0.8296 -2.6034 8 14 2.3215 -1.1204 -4.0079 9 1 3.1456 -2.2877 -3.6037 10 1 1.1661 -1.5867 -4.8160 11 1 3.1467 -0.1875 -4.8164 12 8 2.0140 -0.6844 1.1857 13 6 2.2171 0.0641 2.2812 14 8 1.9981 1.2520 2.2504 15 6 2.7182 -0.5771 3.5496 16 1 2.0088 -1.3368 3.8775 17 6 4.0783 -1.2278 3.2892 18 6 2.8635 0.4892 4.6371 19 6 3.2520 -0.1789 5.9576 20 6 3.3945 0.8714 7.0290 21 6 4.6193 1.4743 7.2466 22 6 4.7498 2.4416 8.2251 23 6 3.6560 2.7982 8.9954 24 9 3.7839 3.7391 9.9564 25 6 2.4312 2.1896 8.7804 26 6 2.3015 1.2274 7.7969 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 0.5139 0.8900 30 1 0.7089 1.1612 -3.4844 31 1 4.4409 -1.6912 4.2066 32 1 3.9753 -1.9874 2.5142 33 1 4.7877 -0.4681 2.9611 34 1 3.6375 1.2001 4.3480 35 1 1.9161 1.0139 4.7603 36 1 2.4779 -0.8896 6.2468 37 1 4.1994 -0.7036 5.8344 38 1 5.4736 1.1922 6.6491 39 1 5.7058 2.9154 8.3921 40 1 1.5773 2.4668 9.3809 41 1 1.3460 0.7528 7.6288 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000870204316.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:39:36 Heat of formation + Delta-G solvation = -151.693836 kcal Electronic energy + Delta-G solvation = -22658.249421 eV Core-core repulsion = 19030.025076 eV Total energy + Delta-G solvation = -3628.224345 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.142 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -49.88841 -41.41388 -40.14112 -37.87777 -36.50459 -35.32040 -33.05541 -32.04914 -31.57927 -28.94386 -27.47384 -26.35393 -24.54593 -23.97643 -22.77270 -21.77662 -20.70372 -18.84526 -18.61690 -18.34295 -17.44334 -17.36729 -16.89179 -16.62022 -16.56629 -16.02785 -15.56317 -15.07864 -14.83568 -14.53646 -14.48106 -14.36487 -13.99938 -13.85342 -13.60164 -13.37634 -13.12349 -13.01934 -12.82860 -12.59447 -12.49401 -12.41009 -12.37197 -12.13572 -11.96983 -11.77850 -11.59576 -11.49510 -11.13277 -10.95981 -10.60349 -10.03258 -9.48133 -8.29108 -6.46010 0.17174 0.31119 1.39147 1.42160 1.42940 1.56717 2.06306 2.42131 2.65105 3.01603 3.32663 3.63425 3.79564 3.87184 3.97771 3.99193 4.16319 4.31021 4.38678 4.42719 4.52407 4.55352 4.61785 4.76858 4.79785 4.84397 4.95613 4.98415 5.04013 5.11528 5.13186 5.19667 5.20179 5.30749 5.36355 5.45629 5.49212 5.63561 5.66207 5.93448 5.97745 6.12268 6.60528 7.01067 7.26806 8.78869 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.034550 B = 0.002521 C = 0.002473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 810.230628 B =11103.359863 C =11319.024039 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.216 3.784 3 H 0.003 0.997 4 C -0.545 4.545 5 H 0.069 0.931 6 C 0.013 3.987 7 N -0.919 5.919 8 Si 0.984 3.016 9 H -0.261 1.261 10 H -0.272 1.272 11 H -0.277 1.277 12 O -0.361 6.361 13 C 0.443 3.557 14 O -0.559 6.559 15 C -0.075 4.075 16 H 0.131 0.869 17 C -0.142 4.142 18 C -0.092 4.092 19 C -0.071 4.071 20 C -0.094 4.094 21 C -0.092 4.092 22 C -0.159 4.159 23 C 0.066 3.934 24 F -0.153 7.153 25 C -0.159 4.159 26 C -0.094 4.094 27 H 0.047 0.953 28 H 0.079 0.921 29 H 0.022 0.978 30 H 0.270 0.730 31 H 0.111 0.889 32 H 0.059 0.941 33 H 0.049 0.951 34 H 0.057 0.943 35 H 0.056 0.944 36 H 0.097 0.903 37 H 0.101 0.899 38 H 0.152 0.848 39 H 0.146 0.854 40 H 0.146 0.854 41 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.287 -3.783 21.483 22.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.163 3.837 3 H 0.021 0.979 4 C -0.583 4.583 5 H 0.087 0.913 6 C -0.186 4.186 7 N -0.557 5.557 8 Si 0.807 3.193 9 H -0.185 1.185 10 H -0.197 1.197 11 H -0.202 1.202 12 O -0.278 6.278 13 C 0.288 3.712 14 O -0.451 6.451 15 C -0.094 4.094 16 H 0.149 0.851 17 C -0.198 4.198 18 C -0.130 4.130 19 C -0.108 4.108 20 C -0.094 4.094 21 C -0.110 4.110 22 C -0.178 4.178 23 C 0.047 3.953 24 F -0.132 7.132 25 C -0.178 4.178 26 C -0.112 4.112 27 H 0.066 0.934 28 H 0.098 0.902 29 H 0.041 0.959 30 H 0.080 0.920 31 H 0.129 0.871 32 H 0.079 0.921 33 H 0.068 0.932 34 H 0.076 0.924 35 H 0.075 0.925 36 H 0.115 0.885 37 H 0.119 0.881 38 H 0.170 0.830 39 H 0.164 0.836 40 H 0.163 0.837 41 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 6.129 -3.290 21.331 22.437 hybrid contribution -0.130 0.765 -0.825 1.133 sum 6.000 -2.524 20.506 21.514 Atomic orbital electron populations 1.21978 0.96877 1.00410 1.00697 1.20300 0.91951 0.91924 0.79566 0.97932 1.21332 1.33215 1.13806 0.89905 0.91305 1.25870 0.94755 0.95691 1.02285 1.70029 1.36729 1.23803 1.25134 0.85119 0.78343 0.78440 0.77409 1.18509 1.19704 1.20220 1.86473 1.76029 1.43741 1.21512 1.24849 0.73453 0.85803 0.87066 1.90575 1.50334 1.18882 1.85315 1.21217 1.01058 0.99548 0.87556 0.85136 1.21838 0.93037 1.00644 1.04331 1.21391 1.02199 0.96430 0.92930 1.20669 1.04846 0.95509 0.89793 1.20179 0.93467 0.98492 0.97259 1.21246 0.98386 0.94799 0.96574 1.21379 0.98763 1.00241 0.97380 1.18037 0.96104 0.91028 0.90167 1.91461 1.96754 1.63120 1.61854 1.21367 0.96675 0.98731 1.01035 1.21239 0.99711 0.96256 0.93954 0.93401 0.90224 0.95914 0.92041 0.87071 0.92138 0.93179 0.92382 0.92511 0.88498 0.88065 0.83032 0.83572 0.83656 0.83253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -7.38 9.33 71.98 0.67 -6.71 16 2 C 0.22 11.97 2.56 29.85 0.08 12.05 16 3 H 0.00 0.18 7.16 -2.39 -0.02 0.16 16 4 C -0.55 -30.97 8.90 25.60 0.23 -30.74 16 5 H 0.07 3.81 7.81 -2.91 -0.02 3.79 16 6 C 0.01 0.74 5.30 84.66 0.45 1.19 16 7 N -0.92 -53.16 11.32 21.45 0.24 -52.91 16 8 Si 0.98 42.74 29.54 68.60 2.03 44.77 16 9 H -0.26 -10.88 7.11 99.48 0.71 -10.17 16 10 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 11 H -0.28 -11.74 7.11 99.48 0.71 -11.03 16 12 O -0.36 -17.20 9.77 -51.37 -0.50 -17.70 16 13 C 0.44 18.16 7.23 71.24 0.51 18.67 16 14 O -0.56 -27.00 15.14 21.97 0.33 -26.66 16 15 C -0.07 -1.92 2.83 -11.54 -0.03 -1.95 16 16 H 0.13 2.66 8.14 -2.39 -0.02 2.64 16 17 C -0.14 -3.00 8.88 71.98 0.64 -2.36 16 18 C -0.09 -2.04 4.01 30.59 0.12 -1.92 16 19 C -0.07 -0.98 5.10 29.85 0.15 -0.83 16 20 C -0.09 -1.51 5.13 -19.86 -0.10 -1.61 16 21 C -0.09 -1.45 9.70 22.26 0.22 -1.24 16 22 C -0.16 -2.76 10.03 22.31 0.22 -2.53 16 23 C 0.07 1.30 7.30 22.37 0.16 1.47 16 24 F -0.15 -3.35 17.27 44.97 0.78 -2.58 16 25 C -0.16 -2.80 10.03 22.31 0.22 -2.58 16 26 C -0.09 -1.51 9.70 22.26 0.22 -1.30 16 27 H 0.05 2.32 8.14 -2.39 -0.02 2.30 16 28 H 0.08 4.45 6.07 -2.39 -0.01 4.44 16 29 H 0.02 1.09 8.14 -2.38 -0.02 1.07 16 30 H 0.27 14.56 8.31 -92.71 -0.77 13.79 16 31 H 0.11 1.38 6.56 -2.39 -0.02 1.37 16 32 H 0.06 1.46 8.11 -2.39 -0.02 1.44 16 33 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 34 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 35 H 0.06 1.46 7.95 -2.39 -0.02 1.45 16 36 H 0.10 1.00 8.08 -2.39 -0.02 0.98 16 37 H 0.10 1.00 6.51 -2.39 -0.02 0.98 16 38 H 0.15 1.74 8.06 -2.91 -0.02 1.72 16 39 H 0.15 2.03 8.06 -2.91 -0.02 2.00 16 40 H 0.15 2.07 8.06 -2.91 -0.02 2.04 16 41 H 0.15 1.83 8.06 -2.91 -0.02 1.81 16 Total: -1.00 -70.41 349.88 7.65 -62.76 By element: Atomic # 1 Polarization: 11.71 SS G_CDS: 1.02 Total: 12.72 kcal Atomic # 6 Polarization: -24.16 SS G_CDS: 3.76 Total: -20.40 kcal Atomic # 7 Polarization: -53.16 SS G_CDS: 0.24 Total: -52.91 kcal Atomic # 8 Polarization: -44.19 SS G_CDS: -0.17 Total: -44.36 kcal Atomic # 9 Polarization: -3.35 SS G_CDS: 0.78 Total: -2.58 kcal Atomic # 14 Polarization: 42.74 SS G_CDS: 2.03 Total: 44.77 kcal Total: -70.41 7.65 -62.76 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000870204316.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.937 kcal (2) G-P(sol) polarization free energy of solvation -70.411 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -159.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.654 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.757 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds