Wall clock time and date at job start Tue Mar 31 2020 07:39:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.09003 * 109.46864 * 2 1 4 4 C 1.50694 * 109.47088 * 239.99967 * 2 1 3 5 5 H 1.08005 * 119.99890 * 239.99976 * 4 2 1 6 6 C 1.37879 * 120.00248 * 60.00130 * 4 2 1 7 7 N 1.31507 * 120.00019 * 359.97438 * 6 4 2 8 8 Si 1.86799 * 119.99845 * 180.02562 * 6 4 2 9 9 H 1.48502 * 109.47446 * 60.00073 * 8 6 4 10 10 H 1.48500 * 109.47162 * 179.97438 * 8 6 4 11 11 H 1.48495 * 109.47112 * 299.99826 * 8 6 4 12 12 O 1.45201 * 109.46948 * 119.99668 * 2 1 3 13 13 C 1.34233 * 116.99978 * 269.99986 * 12 2 1 14 14 O 1.20825 * 119.99811 * 0.02562 * 13 12 2 15 15 C 1.50699 * 119.99577 * 180.02562 * 13 12 2 16 16 H 1.08992 * 109.47201 * 60.00421 * 15 13 12 17 17 C 1.52997 * 109.47336 * 299.99757 * 15 13 12 18 18 C 1.53006 * 109.46610 * 180.02562 * 15 13 12 19 19 C 1.52999 * 109.46626 * 184.99834 * 18 15 13 20 20 C 1.50706 * 109.46957 * 180.02562 * 19 18 15 21 21 C 1.38251 * 119.97129 * 269.73035 * 20 19 18 22 22 C 1.38203 * 120.02236 * 179.72289 * 21 20 19 23 23 C 1.38465 * 119.97055 * 0.56943 * 22 21 20 24 24 F 1.35103 * 120.02206 * 179.67983 * 23 22 21 25 25 C 1.38460 * 119.95125 * 359.70635 * 23 22 21 26 26 C 1.38195 * 119.97168 * 359.97438 * 25 23 22 27 27 H 1.08998 * 109.46680 * 60.00260 * 1 2 3 28 28 H 1.09003 * 109.46864 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.47242 * 300.00365 * 1 2 3 30 30 H 0.97000 * 120.00622 * 180.02562 * 7 6 4 31 31 H 1.09004 * 109.47446 * 180.02562 * 17 15 13 32 32 H 1.08992 * 109.47518 * 300.00470 * 17 15 13 33 33 H 1.09002 * 109.46905 * 60.00506 * 17 15 13 34 34 H 1.08993 * 109.46955 * 305.00306 * 18 15 13 35 35 H 1.09000 * 109.47050 * 65.00135 * 18 15 13 36 36 H 1.08993 * 109.47839 * 299.99931 * 19 18 15 37 37 H 1.09000 * 109.47160 * 60.00369 * 19 18 15 38 38 H 1.08001 * 119.98916 * 359.97438 * 21 20 19 39 39 H 1.07993 * 120.01254 * 180.25170 * 22 21 20 40 40 H 1.07994 * 120.01068 * 179.97438 * 25 23 22 41 41 H 1.07999 * 119.98520 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6994 -0.2394 -2.4827 7 7 0.9429 0.8296 -2.6034 8 14 2.3215 -1.1205 -4.0078 9 1 1.8259 -2.5203 -4.0076 10 1 1.8261 -0.4208 -5.2204 11 1 3.8064 -1.1211 -4.0080 12 8 2.0141 -0.6844 1.1856 13 6 2.2172 0.0642 2.2812 14 8 1.9974 1.2518 2.2505 15 6 2.7193 -0.5769 3.5492 16 1 3.6884 -1.0398 3.3632 17 6 1.7244 -1.6439 4.0099 18 6 2.8632 0.4892 4.6372 19 6 3.4897 -0.1367 5.8848 20 6 3.6309 0.9132 6.9567 21 6 4.7891 1.6635 7.0403 22 6 4.9174 2.6305 8.0193 23 6 3.8901 2.8396 8.9239 24 9 4.0170 3.7802 9.8853 25 6 2.7329 2.0836 8.8426 26 6 2.6043 1.1217 7.8587 27 1 -0.3632 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 0.7083 1.1608 -3.4844 31 1 2.0873 -2.1073 4.9274 32 1 0.7553 -1.1811 4.1959 33 1 1.6215 -2.4035 3.2349 34 1 3.5021 1.2944 4.2746 35 1 1.8803 0.8894 4.8860 36 1 2.8508 -0.9419 6.2474 37 1 4.4726 -0.5369 5.6360 38 1 5.5923 1.4966 6.3378 39 1 5.8205 3.2193 8.0820 40 1 1.9313 2.2456 9.5479 41 1 1.7016 0.5322 7.7949 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000870204318.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:39:42 Heat of formation + Delta-G solvation = -136.431293 kcal Electronic energy + Delta-G solvation = -22658.193735 eV Core-core repulsion = 19030.631223 eV Total energy + Delta-G solvation = -3627.562511 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.142 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -49.09908 -39.84522 -39.31942 -36.31128 -35.16093 -33.27152 -32.13962 -31.38489 -29.56437 -28.09514 -25.34592 -25.27549 -23.31388 -23.21641 -21.46152 -20.58934 -19.15385 -17.90515 -17.01216 -16.66267 -16.56256 -15.94391 -15.79268 -15.42273 -15.11644 -14.62401 -14.40364 -14.18603 -13.81608 -13.66565 -13.31392 -13.08985 -12.79649 -12.53052 -12.19803 -11.84662 -11.79856 -11.63054 -11.50832 -11.27038 -11.14010 -11.03505 -10.85255 -10.79923 -10.65993 -10.38651 -10.28358 -9.55098 -9.46676 -9.36133 -8.91129 -8.74730 -8.49193 -6.18534 -4.25656 0.89189 0.98031 3.03113 3.25628 3.28525 3.30013 3.32554 3.69056 4.03156 4.32637 4.44387 4.47862 4.64296 4.86577 5.01220 5.03498 5.09271 5.13390 5.17089 5.32999 5.41104 5.52774 5.64148 5.76052 5.81442 5.86934 5.90215 5.96384 5.97810 6.04999 6.26240 6.34138 6.39430 6.64500 6.65635 6.88610 6.92127 7.19150 7.60010 7.73234 7.94955 8.14804 8.65339 8.89637 9.39876 10.88856 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.033052 B = 0.002515 C = 0.002485 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 846.954626 B =11132.390676 C =11266.547004 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.215 3.785 3 H 0.045 0.955 4 C -0.521 4.521 5 H 0.068 0.932 6 C 0.062 3.938 7 N -0.890 5.890 8 Si 0.912 3.088 9 H -0.274 1.274 10 H -0.285 1.285 11 H -0.275 1.275 12 O -0.356 6.356 13 C 0.454 3.546 14 O -0.522 6.522 15 C -0.086 4.086 16 H 0.103 0.897 17 C -0.144 4.144 18 C -0.099 4.099 19 C -0.082 4.082 20 C -0.085 4.085 21 C -0.087 4.087 22 C -0.151 4.151 23 C 0.088 3.912 24 F -0.144 7.144 25 C -0.152 4.152 26 C -0.088 4.088 27 H 0.099 0.901 28 H 0.036 0.964 29 H 0.015 0.985 30 H 0.267 0.733 31 H 0.066 0.934 32 H 0.058 0.942 33 H 0.071 0.929 34 H 0.074 0.926 35 H 0.072 0.928 36 H 0.079 0.921 37 H 0.077 0.923 38 H 0.134 0.866 39 H 0.134 0.866 40 H 0.134 0.866 41 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.070 -1.783 21.021 21.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.162 3.838 3 H 0.063 0.937 4 C -0.559 4.559 5 H 0.086 0.914 6 C -0.140 4.140 7 N -0.527 5.527 8 Si 0.739 3.261 9 H -0.199 1.199 10 H -0.210 1.210 11 H -0.200 1.200 12 O -0.272 6.272 13 C 0.296 3.704 14 O -0.413 6.413 15 C -0.106 4.106 16 H 0.121 0.879 17 C -0.201 4.201 18 C -0.136 4.136 19 C -0.119 4.119 20 C -0.085 4.085 21 C -0.105 4.105 22 C -0.170 4.170 23 C 0.069 3.931 24 F -0.122 7.122 25 C -0.171 4.171 26 C -0.106 4.106 27 H 0.117 0.883 28 H 0.055 0.945 29 H 0.034 0.966 30 H 0.077 0.923 31 H 0.085 0.915 32 H 0.077 0.923 33 H 0.090 0.910 34 H 0.093 0.907 35 H 0.091 0.909 36 H 0.098 0.902 37 H 0.096 0.904 38 H 0.152 0.848 39 H 0.152 0.848 40 H 0.152 0.848 41 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 4.898 -1.278 20.838 21.444 hybrid contribution 0.217 0.043 -0.725 0.758 sum 5.115 -1.235 20.113 20.790 Atomic orbital electron populations 1.22153 0.97634 1.00030 1.01342 1.20605 0.91352 0.93874 0.77927 0.93694 1.20992 1.32533 1.13463 0.88954 0.91392 1.24893 0.94944 0.95099 0.99079 1.69887 1.36000 1.22570 1.24273 0.86330 0.79205 0.79539 0.81034 1.19938 1.21037 1.19991 1.86475 1.75683 1.43668 1.21341 1.23351 0.74929 0.85913 0.86169 1.90594 1.48782 1.17075 1.84814 1.20996 1.01405 0.97352 0.90798 0.87900 1.21790 0.98387 0.98107 1.01853 1.21452 1.02437 0.97291 0.92430 1.20715 1.02314 0.95910 0.92999 1.20008 0.93919 0.97939 0.96671 1.20984 0.97816 0.94464 0.97283 1.21154 0.99058 1.00607 0.96206 1.17740 0.96130 0.90180 0.89093 1.91491 1.96308 1.62827 1.61592 1.21141 0.97238 0.97630 1.01061 1.20956 0.98777 0.97153 0.93694 0.88303 0.94474 0.96601 0.92345 0.91517 0.92286 0.90959 0.90698 0.90918 0.90213 0.90449 0.84850 0.84826 0.84850 0.84898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.92 9.33 37.16 0.35 -3.57 16 2 C 0.21 5.79 2.56 -27.88 -0.07 5.72 16 3 H 0.05 1.34 7.16 -51.93 -0.37 0.97 16 4 C -0.52 -14.65 8.90 -34.44 -0.31 -14.96 16 5 H 0.07 1.87 7.81 -52.48 -0.41 1.46 16 6 C 0.06 1.71 5.30 -17.82 -0.09 1.62 16 7 N -0.89 -25.37 11.32 55.43 0.63 -24.74 16 8 Si 0.91 21.04 29.54 -169.99 -5.02 16.02 16 9 H -0.27 -6.20 7.11 56.52 0.40 -5.79 16 10 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 11 H -0.27 -6.25 7.11 56.52 0.40 -5.84 16 12 O -0.36 -8.36 9.77 -39.26 -0.38 -8.75 16 13 C 0.45 9.24 7.23 36.01 0.26 9.50 16 14 O -0.52 -12.22 15.14 -18.75 -0.28 -12.50 16 15 C -0.09 -1.19 2.83 -91.77 -0.26 -1.45 16 16 H 0.10 1.25 8.14 -51.93 -0.42 0.82 16 17 C -0.14 -1.68 8.88 37.16 0.33 -1.35 16 18 C -0.10 -1.18 4.01 -26.73 -0.11 -1.29 16 19 C -0.08 -0.71 5.10 -27.88 -0.14 -0.85 16 20 C -0.09 -0.79 5.13 -104.61 -0.54 -1.32 16 21 C -0.09 -0.79 9.70 -39.59 -0.38 -1.17 16 22 C -0.15 -1.41 10.03 -39.51 -0.40 -1.81 16 23 C 0.09 0.90 7.30 -39.42 -0.29 0.61 16 24 F -0.14 -1.57 17.27 2.25 0.04 -1.53 16 25 C -0.15 -1.39 10.03 -39.52 -0.40 -1.79 16 26 C -0.09 -0.77 9.70 -39.60 -0.38 -1.16 16 27 H 0.10 2.69 6.07 -51.93 -0.32 2.38 16 28 H 0.04 0.89 8.14 -51.93 -0.42 0.47 16 29 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.27 7.17 8.31 -40.82 -0.34 6.83 16 31 H 0.07 0.56 6.56 -51.93 -0.34 0.22 16 32 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.07 0.92 8.11 -51.93 -0.42 0.50 16 34 H 0.07 1.01 7.95 -51.93 -0.41 0.60 16 35 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 36 H 0.08 0.58 6.51 -51.93 -0.34 0.24 16 37 H 0.08 0.58 8.08 -51.93 -0.42 0.16 16 38 H 0.13 0.99 8.06 -52.49 -0.42 0.56 16 39 H 0.13 1.02 8.06 -52.49 -0.42 0.59 16 40 H 0.13 0.99 8.06 -52.49 -0.42 0.56 16 41 H 0.13 0.93 8.06 -52.49 -0.42 0.51 16 LS Contribution 349.88 15.07 5.27 5.27 Total: -1.00 -31.45 349.88 -8.15 -39.60 By element: Atomic # 1 Polarization: 5.88 SS G_CDS: -5.97 Total: -0.09 kcal Atomic # 6 Polarization: -10.86 SS G_CDS: -2.43 Total: -13.28 kcal Atomic # 7 Polarization: -25.37 SS G_CDS: 0.63 Total: -24.74 kcal Atomic # 8 Polarization: -20.58 SS G_CDS: -0.67 Total: -21.24 kcal Atomic # 9 Polarization: -1.57 SS G_CDS: 0.04 Total: -1.53 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.02 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -31.45 -8.15 -39.60 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000870204318.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.829 kcal (2) G-P(sol) polarization free energy of solvation -31.453 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.282 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.602 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds