Wall clock time and date at job start Tue Mar 31 2020 07:39:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.09003 * 109.46864 * 2 1 4 4 C 1.50694 * 109.47088 * 239.99967 * 2 1 3 5 5 H 1.08005 * 119.99890 * 239.99976 * 4 2 1 6 6 C 1.37879 * 120.00248 * 60.00130 * 4 2 1 7 7 N 1.31507 * 120.00019 * 359.97438 * 6 4 2 8 8 Si 1.86799 * 119.99845 * 180.02562 * 6 4 2 9 9 H 1.48502 * 109.47446 * 60.00073 * 8 6 4 10 10 H 1.48500 * 109.47162 * 179.97438 * 8 6 4 11 11 H 1.48495 * 109.47112 * 299.99826 * 8 6 4 12 12 O 1.45201 * 109.46948 * 119.99668 * 2 1 3 13 13 C 1.34233 * 116.99978 * 269.99986 * 12 2 1 14 14 O 1.20825 * 119.99811 * 0.02562 * 13 12 2 15 15 C 1.50699 * 119.99577 * 180.02562 * 13 12 2 16 16 H 1.08992 * 109.47201 * 60.00421 * 15 13 12 17 17 C 1.52997 * 109.47336 * 299.99757 * 15 13 12 18 18 C 1.53006 * 109.46610 * 180.02562 * 15 13 12 19 19 C 1.52999 * 109.46626 * 184.99834 * 18 15 13 20 20 C 1.50706 * 109.46957 * 180.02562 * 19 18 15 21 21 C 1.38251 * 119.97129 * 269.73035 * 20 19 18 22 22 C 1.38203 * 120.02236 * 179.72289 * 21 20 19 23 23 C 1.38465 * 119.97055 * 0.56943 * 22 21 20 24 24 F 1.35103 * 120.02206 * 179.67983 * 23 22 21 25 25 C 1.38460 * 119.95125 * 359.70635 * 23 22 21 26 26 C 1.38195 * 119.97168 * 359.97438 * 25 23 22 27 27 H 1.08998 * 109.46680 * 60.00260 * 1 2 3 28 28 H 1.09003 * 109.46864 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.47242 * 300.00365 * 1 2 3 30 30 H 0.97000 * 120.00622 * 180.02562 * 7 6 4 31 31 H 1.09004 * 109.47446 * 180.02562 * 17 15 13 32 32 H 1.08992 * 109.47518 * 300.00470 * 17 15 13 33 33 H 1.09002 * 109.46905 * 60.00506 * 17 15 13 34 34 H 1.08993 * 109.46955 * 305.00306 * 18 15 13 35 35 H 1.09000 * 109.47050 * 65.00135 * 18 15 13 36 36 H 1.08993 * 109.47839 * 299.99931 * 19 18 15 37 37 H 1.09000 * 109.47160 * 60.00369 * 19 18 15 38 38 H 1.08001 * 119.98916 * 359.97438 * 21 20 19 39 39 H 1.07993 * 120.01254 * 180.25170 * 22 21 20 40 40 H 1.07994 * 120.01068 * 179.97438 * 25 23 22 41 41 H 1.07999 * 119.98520 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6994 -0.2394 -2.4827 7 7 0.9429 0.8296 -2.6034 8 14 2.3215 -1.1205 -4.0078 9 1 1.8259 -2.5203 -4.0076 10 1 1.8261 -0.4208 -5.2204 11 1 3.8064 -1.1211 -4.0080 12 8 2.0141 -0.6844 1.1856 13 6 2.2172 0.0642 2.2812 14 8 1.9974 1.2518 2.2505 15 6 2.7193 -0.5769 3.5492 16 1 3.6884 -1.0398 3.3632 17 6 1.7244 -1.6439 4.0099 18 6 2.8632 0.4892 4.6372 19 6 3.4897 -0.1367 5.8848 20 6 3.6309 0.9132 6.9567 21 6 4.7891 1.6635 7.0403 22 6 4.9174 2.6305 8.0193 23 6 3.8901 2.8396 8.9239 24 9 4.0170 3.7802 9.8853 25 6 2.7329 2.0836 8.8426 26 6 2.6043 1.1217 7.8587 27 1 -0.3632 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 0.7083 1.1608 -3.4844 31 1 2.0873 -2.1073 4.9274 32 1 0.7553 -1.1811 4.1959 33 1 1.6215 -2.4035 3.2349 34 1 3.5021 1.2944 4.2746 35 1 1.8803 0.8894 4.8860 36 1 2.8508 -0.9419 6.2474 37 1 4.4726 -0.5369 5.6360 38 1 5.5923 1.4966 6.3378 39 1 5.8205 3.2193 8.0820 40 1 1.9313 2.2456 9.5479 41 1 1.7016 0.5322 7.7949 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000870204318.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:39:41 Heat of formation + Delta-G solvation = -151.618969 kcal Electronic energy + Delta-G solvation = -22658.852322 eV Core-core repulsion = 19030.631223 eV Total energy + Delta-G solvation = -3628.221098 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.142 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -49.88801 -41.41511 -40.14172 -37.87635 -36.50586 -35.32035 -33.05273 -32.05050 -31.58516 -28.95245 -27.46173 -26.34134 -24.54370 -23.97744 -22.79703 -21.79156 -20.66261 -18.81527 -18.61720 -18.42525 -17.41089 -17.36580 -16.85171 -16.62633 -16.56672 -16.03873 -15.62729 -15.05869 -14.83317 -14.57568 -14.39587 -14.26478 -14.12163 -13.90318 -13.58251 -13.30429 -13.19195 -12.96719 -12.82417 -12.58759 -12.49606 -12.43258 -12.35924 -12.16740 -11.97031 -11.79327 -11.57771 -11.49219 -11.12611 -10.98480 -10.59461 -10.03357 -9.48200 -8.28798 -6.46105 0.17061 0.31029 1.39326 1.42198 1.45925 1.54030 2.06038 2.42418 2.65013 3.01729 3.32551 3.63365 3.79472 3.86858 3.97751 3.99263 4.16306 4.30783 4.38592 4.42981 4.52292 4.55222 4.62628 4.76817 4.80365 4.82931 4.95630 4.99070 5.04276 5.11219 5.13163 5.19570 5.19935 5.30534 5.36124 5.45690 5.48801 5.63323 5.66037 5.93340 5.97647 6.12349 6.59952 7.00935 7.26681 8.78734 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.033052 B = 0.002515 C = 0.002485 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 846.954626 B =11132.390676 C =11266.547004 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.217 3.783 3 H 0.003 0.997 4 C -0.548 4.548 5 H 0.069 0.931 6 C 0.014 3.986 7 N -0.919 5.919 8 Si 0.984 3.016 9 H -0.262 1.262 10 H -0.278 1.278 11 H -0.268 1.268 12 O -0.361 6.361 13 C 0.443 3.557 14 O -0.559 6.559 15 C -0.076 4.076 16 H 0.128 0.872 17 C -0.141 4.141 18 C -0.092 4.092 19 C -0.071 4.071 20 C -0.094 4.094 21 C -0.095 4.095 22 C -0.160 4.160 23 C 0.066 3.934 24 F -0.153 7.153 25 C -0.158 4.158 26 C -0.091 4.091 27 H 0.079 0.921 28 H 0.047 0.953 29 H 0.021 0.979 30 H 0.271 0.729 31 H 0.110 0.890 32 H 0.052 0.948 33 H 0.060 0.940 34 H 0.054 0.946 35 H 0.060 0.940 36 H 0.102 0.898 37 H 0.095 0.905 38 H 0.148 0.852 39 H 0.145 0.855 40 H 0.147 0.853 41 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.729 -3.882 21.627 22.708 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.163 3.837 3 H 0.021 0.979 4 C -0.586 4.586 5 H 0.087 0.913 6 C -0.185 4.185 7 N -0.557 5.557 8 Si 0.807 3.193 9 H -0.187 1.187 10 H -0.203 1.203 11 H -0.192 1.192 12 O -0.278 6.278 13 C 0.288 3.712 14 O -0.451 6.451 15 C -0.095 4.095 16 H 0.145 0.855 17 C -0.198 4.198 18 C -0.129 4.129 19 C -0.108 4.108 20 C -0.094 4.094 21 C -0.112 4.112 22 C -0.179 4.179 23 C 0.047 3.953 24 F -0.132 7.132 25 C -0.177 4.177 26 C -0.109 4.109 27 H 0.098 0.902 28 H 0.066 0.934 29 H 0.040 0.960 30 H 0.080 0.920 31 H 0.129 0.871 32 H 0.071 0.929 33 H 0.079 0.921 34 H 0.073 0.927 35 H 0.078 0.922 36 H 0.121 0.879 37 H 0.113 0.887 38 H 0.166 0.834 39 H 0.163 0.837 40 H 0.165 0.835 41 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 5.559 -3.384 21.474 22.439 hybrid contribution 0.012 0.772 -0.850 1.149 sum 5.571 -2.612 20.624 21.522 Atomic orbital electron populations 1.21968 0.96878 1.00363 1.00640 1.20289 0.91957 0.91905 0.79531 0.97931 1.21285 1.33431 1.13924 0.89955 0.91286 1.25868 0.94719 0.95671 1.02273 1.70015 1.36604 1.23757 1.25274 0.85219 0.78812 0.78651 0.76650 1.18696 1.20344 1.19245 1.86473 1.76064 1.43752 1.21471 1.24846 0.73667 0.85721 0.86924 1.90575 1.50327 1.18897 1.85309 1.21216 1.02757 0.98125 0.87369 0.85453 1.21835 0.97620 0.96924 1.03384 1.21391 1.01756 0.96436 0.93356 1.20668 1.03443 0.95918 0.90794 1.20178 0.94078 0.98188 0.96954 1.21241 0.98445 0.94211 0.97351 1.21365 0.99407 1.00928 0.96150 1.18042 0.97098 0.90679 0.89515 1.91462 1.96422 1.63280 1.62022 1.21379 0.97293 0.97497 1.01530 1.21243 0.99401 0.97039 0.93239 0.90241 0.93440 0.95985 0.92014 0.87131 0.92887 0.92051 0.92733 0.92150 0.87931 0.88670 0.83389 0.83725 0.83496 0.82908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -7.33 9.33 71.99 0.67 -6.66 16 2 C 0.22 12.02 2.56 29.85 0.08 12.09 16 3 H 0.00 0.18 7.16 -2.39 -0.02 0.16 16 4 C -0.55 -31.21 8.90 25.60 0.23 -30.98 16 5 H 0.07 3.81 7.81 -2.91 -0.02 3.78 16 6 C 0.01 0.79 5.30 84.66 0.45 1.24 16 7 N -0.92 -53.20 11.32 21.45 0.24 -52.96 16 8 Si 0.98 42.71 29.54 68.60 2.03 44.74 16 9 H -0.26 -10.86 7.11 99.48 0.71 -10.15 16 10 H -0.28 -11.70 7.11 99.48 0.71 -10.99 16 11 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 12 O -0.36 -17.21 9.77 -51.44 -0.50 -17.72 16 13 C 0.44 18.19 7.23 71.24 0.51 18.70 16 14 O -0.56 -27.02 15.14 21.97 0.33 -26.69 16 15 C -0.08 -1.94 2.83 -11.54 -0.03 -1.98 16 16 H 0.13 2.70 8.14 -2.39 -0.02 2.68 16 17 C -0.14 -2.85 8.88 71.98 0.64 -2.22 16 18 C -0.09 -2.05 4.01 30.60 0.12 -1.92 16 19 C -0.07 -0.98 5.10 29.85 0.15 -0.83 16 20 C -0.09 -1.52 5.13 -19.86 -0.10 -1.62 16 21 C -0.09 -1.56 9.70 22.26 0.22 -1.34 16 22 C -0.16 -2.85 10.03 22.32 0.22 -2.63 16 23 C 0.07 1.31 7.30 22.38 0.16 1.47 16 24 F -0.15 -3.35 17.27 44.97 0.78 -2.58 16 25 C -0.16 -2.71 10.03 22.31 0.22 -2.49 16 26 C -0.09 -1.42 9.70 22.26 0.22 -1.20 16 27 H 0.08 4.45 6.07 -2.39 -0.01 4.43 16 28 H 0.05 2.31 8.14 -2.39 -0.02 2.29 16 29 H 0.02 1.06 8.14 -2.39 -0.02 1.04 16 30 H 0.27 14.66 8.31 -92.71 -0.77 13.89 16 31 H 0.11 1.31 6.56 -2.38 -0.02 1.29 16 32 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 33 H 0.06 1.41 8.11 -2.39 -0.02 1.39 16 34 H 0.05 1.44 7.95 -2.39 -0.02 1.42 16 35 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 36 H 0.10 0.99 6.51 -2.39 -0.02 0.97 16 37 H 0.09 1.03 8.08 -2.39 -0.02 1.01 16 38 H 0.15 1.90 8.06 -2.91 -0.02 1.88 16 39 H 0.14 2.11 8.06 -2.91 -0.02 2.09 16 40 H 0.15 1.99 8.06 -2.91 -0.02 1.96 16 41 H 0.15 1.68 8.06 -2.91 -0.02 1.66 16 Total: -1.00 -70.37 349.88 7.65 -62.72 By element: Atomic # 1 Polarization: 11.84 SS G_CDS: 1.02 Total: 12.85 kcal Atomic # 6 Polarization: -24.13 SS G_CDS: 3.76 Total: -20.37 kcal Atomic # 7 Polarization: -53.20 SS G_CDS: 0.24 Total: -52.96 kcal Atomic # 8 Polarization: -44.24 SS G_CDS: -0.17 Total: -44.41 kcal Atomic # 9 Polarization: -3.35 SS G_CDS: 0.78 Total: -2.58 kcal Atomic # 14 Polarization: 42.71 SS G_CDS: 2.03 Total: 44.74 kcal Total: -70.37 7.65 -62.72 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000870204318.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.897 kcal (2) G-P(sol) polarization free energy of solvation -70.375 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -159.272 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.722 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.619 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds