Wall clock time and date at job start Tue Mar 31 2020 07:46:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 C 1.50708 * 109.47141 * 239.99699 * 2 1 3 5 5 H 1.07995 * 119.99755 * 240.00383 * 4 2 1 6 6 C 1.37873 * 119.99729 * 60.00006 * 4 2 1 7 7 N 1.31516 * 119.99909 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 119.99980 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.46755 * 90.00221 * 8 6 4 10 10 H 1.48498 * 109.46866 * 210.00208 * 8 6 4 11 11 H 1.48496 * 109.47178 * 330.00271 * 8 6 4 12 12 O 1.45206 * 109.47147 * 119.99956 * 2 1 3 13 13 C 1.34224 * 117.00063 * 269.99753 * 12 2 1 14 14 O 1.20827 * 119.99784 * 0.02562 * 13 12 2 15 15 C 1.50701 * 120.00259 * 179.97438 * 13 12 2 16 16 C 1.53000 * 109.47249 * 180.02562 * 15 13 12 17 17 C 1.53001 * 109.47129 * 299.99938 * 16 15 13 18 18 C 1.53003 * 109.47041 * 59.99898 * 16 15 13 19 19 C 1.50700 * 109.46731 * 179.97438 * 16 15 13 20 20 C 1.38236 * 119.97789 * 359.72796 * 19 16 15 21 21 C 1.38200 * 120.02770 * 179.72445 * 20 19 16 22 22 C 1.38459 * 119.97029 * 0.56893 * 21 20 19 23 23 F 1.35104 * 120.02459 * 179.68176 * 22 21 20 24 24 C 1.38460 * 119.94819 * 359.70518 * 22 21 20 25 25 C 1.38193 * 119.97882 * 359.97438 * 24 22 21 26 26 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 27 27 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 28 28 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 29 29 H 0.97002 * 119.99804 * 180.02562 * 7 6 4 30 30 H 1.09004 * 109.46984 * 300.00023 * 15 13 12 31 31 H 1.08999 * 109.47120 * 59.99618 * 15 13 12 32 32 H 1.08999 * 109.46831 * 60.00106 * 17 16 15 33 33 H 1.08997 * 109.47118 * 179.97438 * 17 16 15 34 34 H 1.08999 * 109.46696 * 300.00247 * 17 16 15 35 35 H 1.09004 * 109.47291 * 60.00115 * 18 16 15 36 36 H 1.09000 * 109.46888 * 179.97438 * 18 16 15 37 37 H 1.08999 * 109.47161 * 299.99726 * 18 16 15 38 38 H 1.08001 * 119.98735 * 359.97261 * 20 19 16 39 39 H 1.07995 * 120.01751 * 180.24845 * 21 20 19 40 40 H 1.08007 * 120.01279 * 179.97438 * 24 22 21 41 41 H 1.07990 * 119.99312 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2305 5 1 2.6532 -1.5886 -1.1313 6 6 1.6992 -0.2395 -2.4827 7 7 0.9435 0.8301 -2.6034 8 14 2.3225 -1.1197 -4.0079 9 1 1.3447 -2.1617 -4.4123 10 1 2.4872 -0.1403 -5.1120 11 1 3.6308 -1.7567 -3.7120 12 8 2.0140 -0.6845 1.1856 13 6 2.2172 0.0640 2.2811 14 8 1.9974 1.2517 2.2505 15 6 2.7183 -0.5772 3.5495 16 6 2.8624 0.4889 4.6374 17 6 3.8581 1.5556 4.1774 18 6 1.5022 1.1392 4.8976 19 6 3.3630 -0.1525 5.9060 20 6 3.6079 -1.5125 5.9422 21 6 4.0723 -2.1008 7.1033 22 6 4.2811 -1.3294 8.2340 23 9 4.7289 -1.9045 9.3715 24 6 4.0300 0.0317 8.1981 25 6 3.5719 0.6190 7.0340 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 0.7089 1.1613 -3.4844 30 1 2.0087 -1.3369 3.8775 31 1 3.6871 -1.0410 3.3640 32 1 3.4956 2.0194 3.2600 33 1 3.9605 2.3154 4.9522 34 1 4.8271 1.0922 3.9920 35 1 0.7928 0.3793 5.2254 36 1 1.6048 1.8984 5.6730 37 1 1.1398 1.6031 3.9802 38 1 3.4401 -2.1149 5.0617 39 1 4.2675 -3.1627 7.1303 40 1 4.1920 0.6344 9.0796 41 1 3.3756 1.6805 7.0059 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000870204807.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:46:02 Heat of formation + Delta-G solvation = -121.026760 kcal Electronic energy + Delta-G solvation = -23472.551305 eV Core-core repulsion = 19845.656785 eV Total energy + Delta-G solvation = -3626.894520 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.142 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -49.05228 -40.46918 -39.19655 -36.58131 -35.01579 -33.28699 -31.53359 -29.97476 -29.46116 -28.16519 -27.12007 -25.33742 -23.53004 -22.94651 -21.77411 -19.95891 -19.08551 -18.02528 -16.98577 -16.67023 -16.31444 -15.75942 -15.60647 -15.39983 -15.18356 -14.57252 -14.35081 -14.06933 -13.73786 -13.59170 -13.22385 -12.97355 -12.73409 -12.51842 -12.24323 -11.95578 -11.70851 -11.47525 -11.47063 -11.13670 -11.04425 -10.94868 -10.90557 -10.79248 -10.60142 -10.37719 -10.28591 -9.53815 -9.33507 -9.29777 -8.92140 -8.68585 -8.51063 -6.20679 -4.27590 0.96501 1.03907 2.96602 3.23067 3.28561 3.32060 3.39789 3.61650 4.08185 4.30575 4.42915 4.61835 4.69570 4.81634 4.99296 5.08313 5.12477 5.17756 5.25891 5.61894 5.69287 5.70238 5.75623 5.82517 5.82569 5.91297 5.95199 6.04877 6.10590 6.16104 6.38437 6.51103 6.54150 6.65366 6.71680 6.86292 6.90055 7.19214 7.58913 7.71234 7.93639 8.12920 8.62530 8.87199 9.38177 10.86664 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.031855 B = 0.003043 C = 0.002903 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 878.778157 B = 9200.429879 C = 9643.692117 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.216 3.784 3 H 0.047 0.953 4 C -0.522 4.522 5 H 0.068 0.932 6 C 0.062 3.938 7 N -0.889 5.889 8 Si 0.911 3.089 9 H -0.278 1.278 10 H -0.284 1.284 11 H -0.271 1.271 12 O -0.358 6.358 13 C 0.454 3.546 14 O -0.514 6.514 15 C -0.113 4.113 16 C -0.008 4.008 17 C -0.153 4.153 18 C -0.152 4.152 19 C -0.071 4.071 20 C -0.096 4.096 21 C -0.149 4.149 22 C 0.085 3.915 23 F -0.144 7.144 24 C -0.152 4.152 25 C -0.084 4.084 26 H 0.099 0.901 27 H 0.016 0.984 28 H 0.036 0.964 29 H 0.266 0.734 30 H 0.101 0.899 31 H 0.102 0.898 32 H 0.092 0.908 33 H 0.053 0.947 34 H 0.050 0.950 35 H 0.050 0.950 36 H 0.053 0.947 37 H 0.092 0.908 38 H 0.139 0.861 39 H 0.134 0.866 40 H 0.133 0.867 41 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.627 -2.155 18.695 19.380 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.164 3.836 3 H 0.065 0.935 4 C -0.560 4.560 5 H 0.086 0.914 6 C -0.140 4.140 7 N -0.527 5.527 8 Si 0.738 3.262 9 H -0.204 1.204 10 H -0.210 1.210 11 H -0.196 1.196 12 O -0.274 6.274 13 C 0.298 3.702 14 O -0.405 6.405 15 C -0.151 4.151 16 C -0.008 4.008 17 C -0.209 4.209 18 C -0.209 4.209 19 C -0.071 4.071 20 C -0.114 4.114 21 C -0.168 4.168 22 C 0.066 3.934 23 F -0.123 7.123 24 C -0.170 4.170 25 C -0.102 4.102 26 H 0.117 0.883 27 H 0.035 0.965 28 H 0.055 0.945 29 H 0.076 0.924 30 H 0.119 0.881 31 H 0.120 0.880 32 H 0.111 0.889 33 H 0.072 0.928 34 H 0.069 0.931 35 H 0.069 0.931 36 H 0.072 0.928 37 H 0.111 0.889 38 H 0.157 0.843 39 H 0.152 0.848 40 H 0.151 0.849 41 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 4.480 -1.714 18.525 19.136 hybrid contribution 0.316 -0.512 -0.548 0.814 sum 4.796 -2.227 17.977 18.738 Atomic orbital electron populations 1.22160 0.97620 1.00060 1.01388 1.20616 0.91317 0.93896 0.77818 0.93512 1.21038 1.32503 1.13469 0.88970 0.91356 1.24885 0.94939 0.95074 0.99077 1.69897 1.36112 1.22515 1.24178 0.86282 0.79319 0.79148 0.81443 1.20356 1.20971 1.19615 1.86486 1.75650 1.43784 1.21462 1.23201 0.74879 0.86031 0.86106 1.90470 1.48728 1.16884 1.84394 1.21558 1.03629 0.99065 0.90848 1.19259 0.97121 0.94643 0.89815 1.22163 0.97637 0.97639 1.03505 1.22164 0.94581 1.00332 1.03838 1.19978 0.98394 0.93512 0.95260 1.21157 0.97826 0.94561 0.97836 1.21156 1.02636 1.00646 0.92358 1.17739 1.01088 0.91795 0.82760 1.91486 1.86978 1.85015 1.48833 1.21111 1.02921 0.93157 0.99856 1.20852 0.97720 1.00326 0.91336 0.88290 0.96514 0.94509 0.92401 0.88079 0.87988 0.88899 0.92778 0.93063 0.93136 0.92766 0.88931 0.84288 0.84783 0.84930 0.84947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.84 9.33 37.16 0.35 -3.49 16 2 C 0.22 5.65 2.56 -27.88 -0.07 5.58 16 3 H 0.05 1.34 7.16 -51.93 -0.37 0.97 16 4 C -0.52 -14.44 8.90 -34.44 -0.31 -14.75 16 5 H 0.07 1.86 7.81 -52.49 -0.41 1.45 16 6 C 0.06 1.70 5.30 -17.82 -0.09 1.60 16 7 N -0.89 -24.97 11.32 55.43 0.63 -24.34 16 8 Si 0.91 20.84 29.54 -169.99 -5.02 15.82 16 9 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 10 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 11 H -0.27 -6.12 7.11 56.52 0.40 -5.71 16 12 O -0.36 -8.17 9.86 -39.24 -0.39 -8.55 16 13 C 0.45 8.68 7.35 36.01 0.26 8.94 16 14 O -0.51 -10.73 10.57 -18.75 -0.20 -10.93 16 15 C -0.11 -1.53 3.54 -27.88 -0.10 -1.63 16 16 C -0.01 -0.10 0.60 -155.66 -0.09 -0.19 16 17 C -0.15 -1.96 7.99 37.16 0.30 -1.66 16 18 C -0.15 -1.92 7.99 37.16 0.30 -1.63 16 19 C -0.07 -0.76 4.76 -104.62 -0.50 -1.26 16 20 C -0.10 -0.96 8.97 -39.60 -0.36 -1.31 16 21 C -0.15 -1.45 10.03 -39.51 -0.40 -1.85 16 22 C 0.09 0.89 7.30 -39.42 -0.29 0.60 16 23 F -0.14 -1.60 17.27 2.25 0.04 -1.56 16 24 C -0.15 -1.44 10.03 -39.52 -0.40 -1.84 16 25 C -0.08 -0.82 8.71 -39.59 -0.34 -1.17 16 26 H 0.10 2.64 6.07 -51.93 -0.32 2.32 16 27 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 28 H 0.04 0.87 8.14 -51.93 -0.42 0.44 16 29 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 30 H 0.10 1.19 7.50 -51.93 -0.39 0.80 16 31 H 0.10 1.22 7.53 -51.93 -0.39 0.83 16 32 H 0.09 1.47 5.52 -51.93 -0.29 1.18 16 33 H 0.05 0.60 7.39 -51.93 -0.38 0.21 16 34 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 35 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.05 0.59 7.39 -51.93 -0.38 0.21 16 37 H 0.09 1.44 5.52 -51.93 -0.29 1.15 16 38 H 0.14 1.21 5.89 -52.49 -0.31 0.90 16 39 H 0.13 1.07 8.06 -52.49 -0.42 0.65 16 40 H 0.13 1.01 8.06 -52.48 -0.42 0.59 16 41 H 0.13 1.11 7.10 -52.49 -0.37 0.73 16 LS Contribution 335.08 15.07 5.05 5.05 Total: -1.00 -29.47 335.08 -7.20 -36.67 By element: Atomic # 1 Polarization: 7.46 SS G_CDS: -5.57 Total: 1.89 kcal Atomic # 6 Polarization: -12.31 SS G_CDS: -1.74 Total: -14.05 kcal Atomic # 7 Polarization: -24.97 SS G_CDS: 0.63 Total: -24.34 kcal Atomic # 8 Polarization: -18.90 SS G_CDS: -0.59 Total: -19.48 kcal Atomic # 9 Polarization: -1.60 SS G_CDS: 0.04 Total: -1.56 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.02 Total: 15.82 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -29.47 -7.20 -36.67 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000870204807.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.360 kcal (2) G-P(sol) polarization free energy of solvation -29.468 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.667 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds