Wall clock time and date at job start Tue Mar 31 2020 07:46:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 109.47129 * 2 1 4 4 C 1.50701 * 109.47207 * 119.99812 * 2 1 3 5 5 H 1.07998 * 120.00092 * 116.69119 * 4 2 1 6 6 C 1.37877 * 119.99970 * 296.69708 * 4 2 1 7 7 N 1.31518 * 119.99869 * 352.38029 * 6 4 2 8 8 Si 1.86799 * 120.00092 * 172.65762 * 6 4 2 9 9 H 1.48506 * 109.46884 * 264.79548 * 8 6 4 10 10 H 1.48499 * 109.47314 * 24.79380 * 8 6 4 11 11 H 1.48498 * 109.47075 * 144.79631 * 8 6 4 12 12 O 1.45194 * 109.47239 * 239.99916 * 2 1 3 13 13 C 1.34229 * 117.00169 * 90.00132 * 12 2 1 14 14 O 1.20827 * 119.99859 * 359.97438 * 13 12 2 15 15 C 1.50704 * 120.00541 * 179.97438 * 13 12 2 16 16 C 1.52998 * 109.47413 * 179.97438 * 15 13 12 17 17 C 1.53000 * 109.46984 * 299.99713 * 16 15 13 18 18 C 1.53000 * 109.46983 * 60.00326 * 16 15 13 19 19 C 1.50701 * 109.46760 * 179.97438 * 16 15 13 20 20 C 1.38242 * 119.97871 * 359.72895 * 19 16 15 21 21 C 1.38195 * 120.02958 * 179.72811 * 20 19 16 22 22 C 1.38461 * 119.97073 * 0.56010 * 21 20 19 23 23 F 1.35095 * 120.02815 * 179.68356 * 22 21 20 24 24 C 1.38463 * 119.94939 * 359.71369 * 22 21 20 25 25 C 1.38194 * 119.97206 * 359.97438 * 24 22 21 26 26 H 1.09001 * 109.47267 * 177.92378 * 1 2 3 27 27 H 1.08995 * 109.47232 * 297.93176 * 1 2 3 28 28 H 1.09001 * 109.47019 * 57.93111 * 1 2 3 29 29 H 0.97004 * 119.99840 * 180.27763 * 7 6 4 30 30 H 1.08999 * 109.46957 * 300.00094 * 15 13 12 31 31 H 1.09000 * 109.47025 * 59.99538 * 15 13 12 32 32 H 1.09006 * 109.46782 * 60.00571 * 17 16 15 33 33 H 1.09001 * 109.46971 * 179.97438 * 17 16 15 34 34 H 1.08999 * 109.47624 * 300.00293 * 17 16 15 35 35 H 1.08999 * 109.47458 * 59.99856 * 18 16 15 36 36 H 1.09003 * 109.46415 * 179.97438 * 18 16 15 37 37 H 1.08998 * 109.46780 * 299.99522 * 18 16 15 38 38 H 1.08004 * 119.98697 * 359.97438 * 20 19 16 39 39 H 1.07992 * 120.01602 * 180.25495 * 21 20 19 40 40 H 1.08002 * 120.01320 * 179.97438 * 24 22 21 41 41 H 1.07999 * 119.98885 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6084 -1.6186 1.1323 6 6 1.7564 -0.2009 2.4816 7 7 1.1870 0.9787 2.6003 8 14 2.1983 -1.1825 4.0082 9 1 1.0146 -1.9589 4.4572 10 1 3.3107 -2.1142 3.6928 11 1 2.6206 -0.2549 5.0881 12 8 2.0140 -0.6845 -1.1855 13 6 2.2172 0.0640 -2.2811 14 8 1.9974 1.2517 -2.2506 15 6 2.7194 -0.5770 -3.5492 16 6 2.8633 0.4890 -4.6372 17 6 1.5027 1.1382 -4.8982 18 6 3.8580 1.5565 -4.1768 19 6 3.3661 -0.1520 -5.9050 20 6 3.6237 -1.5098 -5.9374 21 6 4.0795 -2.0997 -7.1010 22 6 4.2892 -1.3281 -8.2315 23 9 4.7408 -1.9025 -9.3678 24 6 4.0363 0.0327 -8.1962 25 6 3.5744 0.6192 -7.0333 26 1 -0.3634 -1.0270 -0.0372 27 1 -0.3633 0.4814 0.9079 28 1 -0.3633 0.5456 -0.8709 29 1 0.9965 1.3389 3.4806 30 1 3.6885 -1.0399 -3.3631 31 1 2.0106 -1.3373 -3.8773 32 1 1.1395 1.6019 -3.9810 33 1 1.6053 1.8980 -5.6730 34 1 0.7941 0.3777 -5.2261 35 1 4.8273 1.0940 -3.9909 36 1 3.9608 2.3157 -4.9522 37 1 3.4947 2.0202 -3.2597 38 1 3.4649 -2.1106 -5.0540 39 1 4.2767 -3.1611 -7.1273 40 1 4.1999 0.6356 -9.0773 41 1 3.3766 1.6806 -7.0056 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000870204808.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:46:05 Heat of formation + Delta-G solvation = -122.000392 kcal Electronic energy + Delta-G solvation = -23469.822917 eV Core-core repulsion = 19842.886177 eV Total energy + Delta-G solvation = -3626.936740 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.142 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -49.05360 -40.46793 -39.19582 -36.58123 -35.01366 -33.25407 -31.53278 -30.02292 -29.48452 -28.18239 -27.11777 -25.31372 -23.53252 -22.94576 -21.79638 -19.96958 -19.08591 -18.02460 -16.98903 -16.65565 -16.31166 -15.75950 -15.61332 -15.40215 -15.18059 -14.55062 -14.34752 -14.06898 -13.73633 -13.59509 -13.22312 -12.96948 -12.74929 -12.50495 -12.25507 -11.96702 -11.71496 -11.55758 -11.47028 -11.10332 -11.02718 -10.97828 -10.90395 -10.80307 -10.60127 -10.42329 -10.29505 -9.54849 -9.33136 -9.29684 -8.93877 -8.68422 -8.50477 -6.22191 -4.26655 0.96606 1.04024 2.96710 3.22964 3.29075 3.32510 3.39903 3.61582 4.08325 4.31066 4.43030 4.61894 4.69692 4.81721 4.99468 5.08422 5.12054 5.17794 5.26021 5.61970 5.69381 5.70388 5.75323 5.82399 5.82780 5.91410 5.95351 6.05037 6.10814 6.16241 6.38424 6.50765 6.54524 6.62285 6.71436 6.81503 6.85448 7.15605 7.56324 7.66958 7.87973 8.11717 8.62615 8.88125 9.38199 10.86846 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.031949 B = 0.003044 C = 0.002902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 876.177409 B = 9195.728389 C = 9645.154128 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.214 3.786 3 H 0.052 0.948 4 C -0.524 4.524 5 H 0.069 0.931 6 C 0.064 3.936 7 N -0.887 5.887 8 Si 0.908 3.092 9 H -0.278 1.278 10 H -0.271 1.271 11 H -0.284 1.284 12 O -0.358 6.358 13 C 0.454 3.546 14 O -0.513 6.513 15 C -0.113 4.113 16 C -0.008 4.008 17 C -0.152 4.152 18 C -0.153 4.153 19 C -0.071 4.071 20 C -0.096 4.096 21 C -0.149 4.149 22 C 0.085 3.915 23 F -0.144 7.144 24 C -0.152 4.152 25 C -0.084 4.084 26 H 0.038 0.962 27 H 0.086 0.914 28 H 0.019 0.981 29 H 0.266 0.734 30 H 0.102 0.898 31 H 0.101 0.899 32 H 0.092 0.908 33 H 0.053 0.947 34 H 0.050 0.950 35 H 0.050 0.950 36 H 0.053 0.947 37 H 0.093 0.907 38 H 0.139 0.861 39 H 0.134 0.866 40 H 0.133 0.867 41 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.146 -2.460 -18.786 19.395 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.162 3.838 3 H 0.070 0.930 4 C -0.562 4.562 5 H 0.087 0.913 6 C -0.139 4.139 7 N -0.525 5.525 8 Si 0.735 3.265 9 H -0.204 1.204 10 H -0.196 1.196 11 H -0.210 1.210 12 O -0.274 6.274 13 C 0.298 3.702 14 O -0.404 6.404 15 C -0.151 4.151 16 C -0.008 4.008 17 C -0.209 4.209 18 C -0.210 4.210 19 C -0.071 4.071 20 C -0.114 4.114 21 C -0.168 4.168 22 C 0.066 3.934 23 F -0.123 7.123 24 C -0.170 4.170 25 C -0.102 4.102 26 H 0.057 0.943 27 H 0.105 0.895 28 H 0.039 0.961 29 H 0.076 0.924 30 H 0.120 0.880 31 H 0.119 0.881 32 H 0.111 0.889 33 H 0.072 0.928 34 H 0.069 0.931 35 H 0.069 0.931 36 H 0.072 0.928 37 H 0.111 0.889 38 H 0.157 0.843 39 H 0.152 0.848 40 H 0.151 0.849 41 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 4.018 -2.006 -18.618 19.152 hybrid contribution 0.231 -0.541 0.578 0.824 sum 4.249 -2.547 -18.040 18.708 Atomic orbital electron populations 1.22086 0.97900 0.99700 1.01113 1.20608 0.91008 0.94300 0.77876 0.93046 1.21018 1.35433 1.10726 0.88983 0.91326 1.24894 0.95046 0.94867 0.99054 1.69972 1.42296 1.15895 1.24312 0.86316 0.78831 0.79692 0.81647 1.20382 1.19561 1.21007 1.86482 1.75661 1.43774 1.21452 1.23206 0.74896 0.86036 0.86093 1.90473 1.48699 1.16864 1.84371 1.21556 1.03624 0.99063 0.90846 1.19258 0.97116 0.94645 0.89816 1.22160 0.94578 1.00325 1.03841 1.22167 0.97649 0.97638 1.03507 1.19978 0.98362 0.93538 0.95264 1.21158 0.97848 0.94574 0.97800 1.21154 1.02705 1.00628 0.92314 1.17738 1.01036 0.91798 0.82809 1.91483 1.86837 1.85047 1.48944 1.21111 1.02899 0.93169 0.99868 1.20852 0.97702 1.00318 0.91363 0.94324 0.89550 0.96144 0.92416 0.87981 0.88087 0.88941 0.92762 0.93134 0.93065 0.92783 0.88876 0.84287 0.84786 0.84930 0.84947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.67 9.39 37.16 0.35 -3.32 16 2 C 0.21 5.59 2.44 -27.88 -0.07 5.52 16 3 H 0.05 1.48 7.15 -51.93 -0.37 1.11 16 4 C -0.52 -14.48 8.85 -34.44 -0.30 -14.79 16 5 H 0.07 1.88 7.82 -52.49 -0.41 1.46 16 6 C 0.06 1.74 5.21 -17.82 -0.09 1.65 16 7 N -0.89 -25.07 11.92 55.43 0.66 -24.41 16 8 Si 0.91 20.84 29.54 -169.99 -5.02 15.81 16 9 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 10 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 11 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 12 O -0.36 -8.13 9.86 -39.25 -0.39 -8.52 16 13 C 0.45 8.67 7.35 36.01 0.26 8.93 16 14 O -0.51 -10.72 10.57 -18.75 -0.20 -10.92 16 15 C -0.11 -1.52 3.54 -27.88 -0.10 -1.62 16 16 C -0.01 -0.10 0.60 -155.66 -0.09 -0.19 16 17 C -0.15 -1.92 7.99 37.16 0.30 -1.62 16 18 C -0.15 -1.97 7.99 37.16 0.30 -1.67 16 19 C -0.07 -0.76 4.76 -104.62 -0.50 -1.26 16 20 C -0.10 -0.96 8.97 -39.60 -0.36 -1.31 16 21 C -0.15 -1.45 10.03 -39.51 -0.40 -1.85 16 22 C 0.09 0.89 7.30 -39.42 -0.29 0.60 16 23 F -0.14 -1.60 17.27 2.25 0.04 -1.56 16 24 C -0.15 -1.44 10.03 -39.51 -0.40 -1.84 16 25 C -0.08 -0.82 8.71 -39.59 -0.34 -1.17 16 26 H 0.04 0.89 8.14 -51.93 -0.42 0.46 16 27 H 0.09 2.26 6.60 -51.93 -0.34 1.92 16 28 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.27 7.07 8.31 -40.82 -0.34 6.74 16 30 H 0.10 1.22 7.50 -51.93 -0.39 0.83 16 31 H 0.10 1.18 7.53 -51.93 -0.39 0.79 16 32 H 0.09 1.43 5.52 -51.93 -0.29 1.15 16 33 H 0.05 0.59 7.39 -51.93 -0.38 0.21 16 34 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 35 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.05 0.60 7.39 -51.93 -0.38 0.21 16 37 H 0.09 1.48 5.52 -51.93 -0.29 1.19 16 38 H 0.14 1.21 5.89 -52.48 -0.31 0.90 16 39 H 0.13 1.07 8.06 -52.49 -0.42 0.65 16 40 H 0.13 1.01 8.06 -52.49 -0.42 0.59 16 41 H 0.13 1.11 7.10 -52.49 -0.37 0.73 16 LS Contribution 336.02 15.07 5.06 5.06 Total: -1.00 -29.59 336.02 -7.17 -36.76 By element: Atomic # 1 Polarization: 7.31 SS G_CDS: -5.60 Total: 1.71 kcal Atomic # 6 Polarization: -12.21 SS G_CDS: -1.73 Total: -13.93 kcal Atomic # 7 Polarization: -25.07 SS G_CDS: 0.66 Total: -24.41 kcal Atomic # 8 Polarization: -18.86 SS G_CDS: -0.59 Total: -19.44 kcal Atomic # 9 Polarization: -1.60 SS G_CDS: 0.04 Total: -1.56 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.02 Total: 15.81 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -29.59 -7.17 -36.76 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000870204808.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.243 kcal (2) G-P(sol) polarization free energy of solvation -29.586 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.171 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.757 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.000 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds