Wall clock time and date at job start Tue Mar 31 2020 07:46:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 109.47129 * 2 1 4 4 C 1.50701 * 109.47207 * 119.99812 * 2 1 3 5 5 H 1.07998 * 120.00092 * 116.69119 * 4 2 1 6 6 C 1.37877 * 119.99970 * 296.69708 * 4 2 1 7 7 N 1.31518 * 119.99869 * 352.38029 * 6 4 2 8 8 Si 1.86799 * 120.00092 * 172.65762 * 6 4 2 9 9 H 1.48506 * 109.46884 * 264.79548 * 8 6 4 10 10 H 1.48499 * 109.47314 * 24.79380 * 8 6 4 11 11 H 1.48498 * 109.47075 * 144.79631 * 8 6 4 12 12 O 1.45194 * 109.47239 * 239.99916 * 2 1 3 13 13 C 1.34229 * 117.00169 * 90.00132 * 12 2 1 14 14 O 1.20827 * 119.99859 * 359.97438 * 13 12 2 15 15 C 1.50704 * 120.00541 * 179.97438 * 13 12 2 16 16 C 1.52998 * 109.47413 * 179.97438 * 15 13 12 17 17 C 1.53000 * 109.46984 * 299.99713 * 16 15 13 18 18 C 1.53000 * 109.46983 * 60.00326 * 16 15 13 19 19 C 1.50701 * 109.46760 * 179.97438 * 16 15 13 20 20 C 1.38242 * 119.97871 * 359.72895 * 19 16 15 21 21 C 1.38195 * 120.02958 * 179.72811 * 20 19 16 22 22 C 1.38461 * 119.97073 * 0.56010 * 21 20 19 23 23 F 1.35095 * 120.02815 * 179.68356 * 22 21 20 24 24 C 1.38463 * 119.94939 * 359.71369 * 22 21 20 25 25 C 1.38194 * 119.97206 * 359.97438 * 24 22 21 26 26 H 1.09001 * 109.47267 * 177.92378 * 1 2 3 27 27 H 1.08995 * 109.47232 * 297.93176 * 1 2 3 28 28 H 1.09001 * 109.47019 * 57.93111 * 1 2 3 29 29 H 0.97004 * 119.99840 * 180.27763 * 7 6 4 30 30 H 1.08999 * 109.46957 * 300.00094 * 15 13 12 31 31 H 1.09000 * 109.47025 * 59.99538 * 15 13 12 32 32 H 1.09006 * 109.46782 * 60.00571 * 17 16 15 33 33 H 1.09001 * 109.46971 * 179.97438 * 17 16 15 34 34 H 1.08999 * 109.47624 * 300.00293 * 17 16 15 35 35 H 1.08999 * 109.47458 * 59.99856 * 18 16 15 36 36 H 1.09003 * 109.46415 * 179.97438 * 18 16 15 37 37 H 1.08998 * 109.46780 * 299.99522 * 18 16 15 38 38 H 1.08004 * 119.98697 * 359.97438 * 20 19 16 39 39 H 1.07992 * 120.01602 * 180.25495 * 21 20 19 40 40 H 1.08002 * 120.01320 * 179.97438 * 24 22 21 41 41 H 1.07999 * 119.98885 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6084 -1.6186 1.1323 6 6 1.7564 -0.2009 2.4816 7 7 1.1870 0.9787 2.6003 8 14 2.1983 -1.1825 4.0082 9 1 1.0146 -1.9589 4.4572 10 1 3.3107 -2.1142 3.6928 11 1 2.6206 -0.2549 5.0881 12 8 2.0140 -0.6845 -1.1855 13 6 2.2172 0.0640 -2.2811 14 8 1.9974 1.2517 -2.2506 15 6 2.7194 -0.5770 -3.5492 16 6 2.8633 0.4890 -4.6372 17 6 1.5027 1.1382 -4.8982 18 6 3.8580 1.5565 -4.1768 19 6 3.3661 -0.1520 -5.9050 20 6 3.6237 -1.5098 -5.9374 21 6 4.0795 -2.0997 -7.1010 22 6 4.2892 -1.3281 -8.2315 23 9 4.7408 -1.9025 -9.3678 24 6 4.0363 0.0327 -8.1962 25 6 3.5744 0.6192 -7.0333 26 1 -0.3634 -1.0270 -0.0372 27 1 -0.3633 0.4814 0.9079 28 1 -0.3633 0.5456 -0.8709 29 1 0.9965 1.3389 3.4806 30 1 3.6885 -1.0399 -3.3631 31 1 2.0106 -1.3373 -3.8773 32 1 1.1395 1.6019 -3.9810 33 1 1.6053 1.8980 -5.6730 34 1 0.7941 0.3777 -5.2261 35 1 4.8273 1.0940 -3.9909 36 1 3.9608 2.3157 -4.9522 37 1 3.4947 2.0202 -3.2597 38 1 3.4649 -2.1106 -5.0540 39 1 4.2767 -3.1611 -7.1273 40 1 4.1999 0.6356 -9.0773 41 1 3.3766 1.6806 -7.0056 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000870204808.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:46:05 Heat of formation + Delta-G solvation = -135.885358 kcal Electronic energy + Delta-G solvation = -23470.425015 eV Core-core repulsion = 19842.886177 eV Total energy + Delta-G solvation = -3627.538838 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.142 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -49.85140 -41.72994 -40.36733 -38.00367 -36.33388 -35.27088 -32.32579 -31.83502 -30.44017 -29.37603 -28.14632 -27.40329 -24.60666 -23.75080 -23.32633 -21.50823 -20.25299 -18.96053 -18.62779 -18.30698 -17.31006 -17.07278 -16.93675 -16.55255 -16.35151 -16.06211 -15.37803 -15.18341 -14.89473 -14.49583 -14.37420 -14.32075 -14.06463 -13.77500 -13.65618 -13.47678 -13.14347 -12.87695 -12.75586 -12.71144 -12.51401 -12.31595 -12.28608 -12.15235 -12.02740 -11.89194 -11.51719 -11.44490 -10.96978 -10.79713 -10.57521 -10.01444 -9.48335 -8.29819 -6.43612 0.18676 0.32333 1.42057 1.43276 1.45510 1.55578 2.08154 2.43594 2.64287 3.02386 3.33498 3.49785 3.67983 3.95268 3.98065 4.01739 4.08760 4.32636 4.37435 4.50019 4.56069 4.61342 4.66139 4.79040 4.83774 4.84752 4.96940 4.97456 5.03892 5.05443 5.13432 5.17350 5.23194 5.29787 5.45376 5.46438 5.53745 5.63074 5.63178 5.93390 5.96553 6.21640 6.63275 7.07539 7.29191 8.79653 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.031949 B = 0.003044 C = 0.002902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 876.177409 B = 9195.728389 C = 9645.154128 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.218 3.782 3 H 0.011 0.989 4 C -0.549 4.549 5 H 0.067 0.933 6 C 0.017 3.983 7 N -0.918 5.918 8 Si 0.978 3.022 9 H -0.268 1.268 10 H -0.264 1.264 11 H -0.280 1.280 12 O -0.368 6.368 13 C 0.445 3.555 14 O -0.534 6.534 15 C -0.105 4.105 16 C -0.001 4.001 17 C -0.150 4.150 18 C -0.151 4.151 19 C -0.077 4.077 20 C -0.099 4.099 21 C -0.151 4.151 22 C 0.071 3.929 23 F -0.151 7.151 24 C -0.151 4.151 25 C -0.085 4.085 26 H 0.049 0.951 27 H 0.065 0.935 28 H 0.029 0.971 29 H 0.270 0.730 30 H 0.122 0.878 31 H 0.126 0.874 32 H 0.058 0.942 33 H 0.071 0.929 34 H 0.058 0.942 35 H 0.055 0.945 36 H 0.071 0.929 37 H 0.057 0.943 38 H 0.152 0.848 39 H 0.150 0.850 40 H 0.150 0.850 41 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.743 -3.847 -19.848 20.766 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.165 3.835 3 H 0.029 0.971 4 C -0.587 4.587 5 H 0.085 0.915 6 C -0.182 4.182 7 N -0.556 5.556 8 Si 0.801 3.199 9 H -0.193 1.193 10 H -0.188 1.188 11 H -0.205 1.205 12 O -0.285 6.285 13 C 0.290 3.710 14 O -0.425 6.425 15 C -0.142 4.142 16 C -0.001 4.001 17 C -0.207 4.207 18 C -0.208 4.208 19 C -0.077 4.077 20 C -0.117 4.117 21 C -0.169 4.169 22 C 0.052 3.948 23 F -0.130 7.130 24 C -0.170 4.170 25 C -0.103 4.103 26 H 0.068 0.932 27 H 0.084 0.916 28 H 0.048 0.952 29 H 0.079 0.921 30 H 0.140 0.860 31 H 0.144 0.856 32 H 0.077 0.923 33 H 0.090 0.910 34 H 0.077 0.923 35 H 0.074 0.926 36 H 0.090 0.910 37 H 0.076 0.924 38 H 0.170 0.830 39 H 0.168 0.832 40 H 0.168 0.832 41 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 4.616 -3.390 -19.708 20.523 hybrid contribution 0.070 -0.039 0.802 0.806 sum 4.686 -3.430 -18.906 19.778 Atomic orbital electron populations 1.21904 0.96978 1.00213 1.00429 1.20254 0.91697 0.92301 0.79279 0.97081 1.21317 1.36195 1.10976 0.90166 0.91494 1.25812 0.94601 0.95692 1.02144 1.70089 1.42892 1.17310 1.25281 0.85242 0.78974 0.78256 0.77393 1.19309 1.18773 1.20502 1.86467 1.76309 1.44034 1.21664 1.24361 0.74149 0.85981 0.86508 1.90492 1.49318 1.18031 1.84636 1.21743 1.04874 0.99691 0.87865 1.19147 0.96698 0.94043 0.90192 1.22100 0.94991 1.00945 1.02680 1.22108 0.97904 0.98358 1.02445 1.19805 0.99347 0.93976 0.94554 1.21298 0.97621 0.94371 0.98382 1.21343 1.02154 1.01500 0.91921 1.17993 1.01505 0.92404 0.82895 1.91468 1.86993 1.85194 1.49314 1.21309 1.02181 0.93054 1.00429 1.20996 0.97332 1.00968 0.91034 0.93166 0.91610 0.95236 0.92093 0.85976 0.85611 0.92275 0.91045 0.92280 0.92556 0.90987 0.92397 0.83039 0.83230 0.83205 0.83658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.86 9.39 71.98 0.68 -6.18 16 2 C 0.22 11.71 2.44 29.85 0.07 11.78 16 3 H 0.01 0.69 7.15 -2.39 -0.02 0.67 16 4 C -0.55 -30.82 8.85 25.60 0.23 -30.59 16 5 H 0.07 3.68 7.82 -2.91 -0.02 3.66 16 6 C 0.02 0.95 5.21 84.65 0.44 1.39 16 7 N -0.92 -52.83 11.92 21.45 0.26 -52.57 16 8 Si 0.98 42.51 29.54 68.60 2.03 44.54 16 9 H -0.27 -11.17 7.11 99.48 0.71 -10.47 16 10 H -0.26 -11.05 7.11 99.48 0.71 -10.35 16 11 H -0.28 -11.86 7.11 99.48 0.71 -11.15 16 12 O -0.37 -16.96 9.86 -51.41 -0.51 -17.47 16 13 C 0.44 17.12 7.35 71.24 0.52 17.64 16 14 O -0.53 -23.13 10.57 21.96 0.23 -22.90 16 15 C -0.10 -2.65 3.54 29.85 0.11 -2.54 16 16 C 0.00 -0.02 0.60 -52.93 -0.03 -0.05 16 17 C -0.15 -3.62 7.99 71.98 0.58 -3.05 16 18 C -0.15 -3.78 7.99 71.98 0.58 -3.20 16 19 C -0.08 -1.44 4.76 -19.86 -0.09 -1.53 16 20 C -0.10 -1.69 8.97 22.26 0.20 -1.49 16 21 C -0.15 -2.54 10.03 22.31 0.22 -2.31 16 22 C 0.07 1.32 7.30 22.38 0.16 1.48 16 23 F -0.15 -3.07 17.27 44.97 0.78 -2.30 16 24 C -0.15 -2.48 10.03 22.31 0.22 -2.26 16 25 C -0.09 -1.43 8.71 22.26 0.19 -1.24 16 26 H 0.05 2.32 8.14 -2.39 -0.02 2.30 16 27 H 0.07 3.53 6.60 -2.39 -0.02 3.51 16 28 H 0.03 1.35 8.14 -2.39 -0.02 1.33 16 29 H 0.27 14.52 8.31 -92.71 -0.77 13.75 16 30 H 0.12 2.65 7.50 -2.39 -0.02 2.63 16 31 H 0.13 2.60 7.53 -2.39 -0.02 2.59 16 32 H 0.06 1.85 5.52 -2.38 -0.01 1.84 16 33 H 0.07 1.44 7.39 -2.39 -0.02 1.42 16 34 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 35 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 36 H 0.07 1.49 7.39 -2.39 -0.02 1.48 16 37 H 0.06 1.88 5.52 -2.39 -0.01 1.87 16 38 H 0.15 2.13 5.89 -2.91 -0.02 2.11 16 39 H 0.15 1.98 8.06 -2.91 -0.02 1.95 16 40 H 0.15 1.87 8.06 -2.91 -0.02 1.85 16 41 H 0.15 2.01 7.10 -2.91 -0.02 1.98 16 Total: -1.00 -65.16 336.02 7.89 -57.27 By element: Atomic # 1 Polarization: 14.53 SS G_CDS: 1.03 Total: 15.57 kcal Atomic # 6 Polarization: -26.21 SS G_CDS: 4.07 Total: -22.14 kcal Atomic # 7 Polarization: -52.83 SS G_CDS: 0.26 Total: -52.57 kcal Atomic # 8 Polarization: -40.09 SS G_CDS: -0.27 Total: -40.36 kcal Atomic # 9 Polarization: -3.07 SS G_CDS: 0.78 Total: -2.30 kcal Atomic # 14 Polarization: 42.51 SS G_CDS: 2.03 Total: 44.54 kcal Total: -65.16 7.89 -57.27 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000870204808.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.619 kcal (2) G-P(sol) polarization free energy of solvation -65.159 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.777 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.892 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.267 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.885 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds