Wall clock time and date at job start Tue Mar 31 2020 07:43:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.47497 * 2 1 4 4 C 1.50698 * 109.47105 * 120.00583 * 2 1 3 5 5 H 1.08006 * 120.00325 * 119.99901 * 4 2 1 6 6 C 1.37884 * 120.00052 * 299.99695 * 4 2 1 7 7 N 1.31511 * 119.99898 * 180.02562 * 6 4 2 8 8 Si 1.86804 * 119.99653 * 359.97438 * 6 4 2 9 9 H 1.48497 * 109.46646 * 90.00153 * 8 6 4 10 10 H 1.48498 * 109.46736 * 209.99846 * 8 6 4 11 11 H 1.48494 * 109.47128 * 330.00169 * 8 6 4 12 12 N 1.46503 * 109.46765 * 240.00163 * 2 1 3 13 13 N 1.39529 * 124.46556 * 300.04276 * 12 2 1 14 14 C 1.26309 * 112.88999 * 178.30126 * 13 12 2 15 15 C 1.50978 * 130.31277 * 172.60909 * 14 13 12 16 16 C 1.53810 * 106.71238 * 234.80495 * 15 14 13 17 17 C 1.52840 * 109.89295 * 308.70766 * 16 15 14 18 18 C 1.53327 * 111.20692 * 63.80989 * 17 16 15 19 19 C 1.52248 * 107.50214 * 356.93933 * 14 13 12 20 20 H 1.09004 * 112.19309 * 246.13847 * 19 14 13 21 21 C 1.35282 * 124.46493 * 120.00147 * 12 2 1 22 22 O 1.21306 * 127.55036 * 5.56521 * 21 12 2 23 23 O 1.43848 * 109.20250 * 303.54392 * 17 16 15 24 24 C 1.44757 * 104.83712 * 216.20914 * 23 17 16 25 25 C 1.54904 * 101.70351 * 36.16153 * 24 23 17 26 26 O 1.43422 * 109.48187 * 184.61807 * 17 16 15 27 27 H 1.09001 * 109.46894 * 299.99685 * 1 2 3 28 28 H 1.08996 * 109.47272 * 59.99560 * 1 2 3 29 29 H 1.08999 * 109.47497 * 180.02562 * 1 2 3 30 30 H 0.97002 * 119.99944 * 179.97438 * 7 6 4 31 31 H 1.08999 * 110.07702 * 115.46138 * 15 14 13 32 32 H 1.08999 * 109.91255 * 354.05803 * 15 14 13 33 33 H 1.09002 * 109.38617 * 188.60220 * 16 15 14 34 34 H 1.08996 * 109.38311 * 68.80969 * 16 15 14 35 35 H 1.08995 * 109.68507 * 54.44431 * 18 17 16 36 36 H 1.08991 * 109.68649 * 175.00736 * 18 17 16 37 37 H 1.09008 * 110.98489 * 278.05411 * 24 23 17 38 38 H 1.09000 * 110.98513 * 154.26349 * 24 23 17 39 39 H 1.08998 * 110.69519 * 206.02065 * 25 24 23 40 40 H 1.09000 * 110.69105 * 82.82071 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 1.2304 5 1 2.6532 -1.5887 1.1312 6 6 1.6993 -0.2395 2.4828 7 7 2.1381 -0.8593 3.5565 8 14 0.6260 1.2797 2.6542 9 1 -0.8019 0.8744 2.6994 10 1 0.9773 1.9951 3.9072 11 1 0.8493 2.1772 1.4924 12 7 2.0182 -0.6906 -1.1962 13 7 1.7384 -2.0212 -1.5093 14 6 2.2420 -2.3834 -2.6096 15 6 2.3139 -3.7496 -3.2483 16 6 3.7975 -4.0180 -3.5526 17 6 4.3916 -2.8400 -4.3242 18 6 4.3769 -1.5601 -3.4801 19 6 2.9198 -1.1671 -3.2254 20 1 2.4307 -0.8446 -4.1446 21 6 2.7992 -0.1220 -2.1433 22 8 3.2945 0.9852 -2.1262 23 8 3.6213 -2.6204 -5.5191 24 6 4.5911 -2.2216 -6.5171 25 6 5.8116 -3.0961 -6.1364 26 8 5.7425 -3.1449 -4.6969 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 1.9041 -0.5278 4.4375 31 1 1.7356 -3.7616 -4.1721 32 1 1.9326 -4.5024 -2.5584 33 1 3.8857 -4.9244 -4.1516 34 1 4.3409 -4.1485 -2.6168 35 1 4.8798 -1.7410 -2.5302 36 1 4.8845 -0.7596 -4.0181 37 1 4.8280 -1.1612 -6.4294 38 1 4.2386 -2.4594 -7.5208 39 1 6.7393 -2.6252 -6.4616 40 1 5.7166 -4.0957 -6.5605 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000887286931.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:43:13 Heat of formation + Delta-G solvation = -54.887430 kcal Electronic energy + Delta-G solvation = -24844.729505 eV Core-core repulsion = 21240.622963 eV Total energy + Delta-G solvation = -3604.106542 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.53891 -40.32785 -37.11016 -35.75682 -35.16155 -33.89040 -31.71182 -31.58629 -29.77625 -28.81122 -26.59994 -25.20403 -24.09377 -23.47042 -21.55352 -21.21465 -20.03739 -18.88278 -17.41795 -16.85008 -16.73228 -16.15900 -16.01670 -15.62514 -14.99965 -14.75873 -14.33116 -14.15556 -13.98876 -13.59509 -13.31990 -13.08042 -12.99505 -12.93050 -12.47665 -12.32404 -12.15834 -11.99092 -11.92496 -11.64362 -11.57888 -11.21943 -10.95960 -10.68198 -10.47272 -10.27457 -10.09359 -9.93564 -9.65162 -9.35756 -9.00574 -8.65122 -7.89823 -6.15424 -4.16326 2.03402 2.97311 3.12889 3.21650 3.25304 3.33594 3.34100 3.66902 4.05347 4.28269 4.30032 4.31361 4.56494 4.61679 4.82581 4.85755 4.97770 5.03669 5.11316 5.15879 5.25941 5.27243 5.36863 5.44638 5.62722 5.77383 5.79121 5.90867 5.99977 6.03480 6.16514 6.24492 6.34540 6.47935 6.69465 6.86006 7.12054 7.21921 7.48709 8.22519 8.45117 8.52380 8.89941 9.42469 10.97489 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.030489 B = 0.004310 C = 0.004205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 918.138671 B = 6494.318450 C = 6656.739782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.257 3.743 3 H 0.063 0.937 4 C -0.522 4.522 5 H 0.083 0.917 6 C 0.076 3.924 7 N -0.891 5.891 8 Si 0.881 3.119 9 H -0.274 1.274 10 H -0.291 1.291 11 H -0.266 1.266 12 N -0.435 5.435 13 N -0.189 5.189 14 C 0.055 3.945 15 C -0.025 4.025 16 C -0.116 4.116 17 C 0.262 3.738 18 C -0.107 4.107 19 C -0.136 4.136 20 H 0.135 0.865 21 C 0.497 3.503 22 O -0.509 6.509 23 O -0.364 6.364 24 C 0.013 3.987 25 C 0.020 3.980 26 O -0.375 6.375 27 H 0.054 0.946 28 H 0.031 0.969 29 H 0.066 0.934 30 H 0.267 0.733 31 H 0.097 0.903 32 H 0.096 0.904 33 H 0.087 0.913 34 H 0.090 0.910 35 H 0.088 0.912 36 H 0.083 0.917 37 H 0.076 0.924 38 H 0.109 0.891 39 H 0.099 0.901 40 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.275 -6.592 -21.354 22.587 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.157 3.843 3 H 0.081 0.919 4 C -0.561 4.561 5 H 0.101 0.899 6 C -0.127 4.127 7 N -0.528 5.528 8 Si 0.711 3.289 9 H -0.201 1.201 10 H -0.219 1.219 11 H -0.191 1.191 12 N -0.253 5.253 13 N 0.007 4.993 14 C -0.140 4.140 15 C -0.065 4.065 16 C -0.154 4.154 17 C 0.186 3.814 18 C -0.146 4.146 19 C -0.160 4.160 20 H 0.152 0.848 21 C 0.283 3.717 22 O -0.384 6.384 23 O -0.285 6.285 24 C -0.064 4.064 25 C -0.056 4.056 26 O -0.296 6.296 27 H 0.072 0.928 28 H 0.050 0.950 29 H 0.085 0.915 30 H 0.077 0.923 31 H 0.115 0.885 32 H 0.115 0.885 33 H 0.105 0.895 34 H 0.108 0.892 35 H 0.106 0.894 36 H 0.101 0.899 37 H 0.094 0.906 38 H 0.127 0.873 39 H 0.117 0.883 40 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 2.886 -6.153 -20.011 21.134 hybrid contribution -0.103 1.311 -0.436 1.385 sum 2.783 -4.843 -20.448 21.197 Atomic orbital electron populations 1.22437 0.98017 1.02145 0.99173 1.19421 0.90922 0.92665 0.81308 0.91908 1.21066 1.32848 1.14226 0.87914 0.89922 1.24847 0.95655 0.96627 0.95534 1.69862 1.44995 1.40029 0.97948 0.86959 0.80761 0.83655 0.77548 1.20100 1.21864 1.19064 1.50316 1.46033 1.06309 1.22655 1.74200 1.14476 0.96810 1.13846 1.24995 0.98732 0.96825 0.93425 1.20169 0.95996 0.89622 1.00668 1.21928 0.95664 0.96741 1.01114 1.23434 0.77526 0.93978 0.86498 1.21851 0.94135 0.96925 1.01663 1.21800 0.98453 0.95230 1.00547 0.84787 1.20998 0.79061 0.87733 0.83909 1.90706 1.48724 1.20080 1.78841 1.89286 1.30730 1.88228 1.20248 1.24390 0.88246 0.99569 0.94169 1.24194 0.99770 1.00532 0.81119 1.88936 1.28031 1.91680 1.20945 0.92768 0.94965 0.91460 0.92321 0.88463 0.88525 0.89450 0.89164 0.89362 0.89887 0.90553 0.87318 0.88338 0.90530 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.64 8.89 37.16 0.33 -3.31 16 2 C 0.26 6.51 2.58 -69.08 -0.18 6.34 16 3 H 0.06 1.68 6.76 -51.93 -0.35 1.33 16 4 C -0.52 -15.10 9.30 -34.44 -0.32 -15.42 16 5 H 0.08 2.63 8.06 -52.48 -0.42 2.21 16 6 C 0.08 2.22 5.45 -17.82 -0.10 2.12 16 7 N -0.89 -27.27 13.96 55.43 0.77 -26.50 16 8 Si 0.88 21.86 24.37 -169.99 -4.14 17.72 16 9 H -0.27 -6.52 6.87 56.52 0.39 -6.13 16 10 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 11 H -0.27 -6.40 6.53 56.52 0.37 -6.03 16 12 N -0.43 -9.95 3.25 -54.72 -0.18 -10.13 16 13 N -0.19 -3.84 11.75 34.01 0.40 -3.44 16 14 C 0.05 0.87 6.82 -78.69 -0.54 0.34 16 15 C -0.03 -0.28 6.12 -27.33 -0.17 -0.45 16 16 C -0.12 -1.23 5.36 -26.39 -0.14 -1.37 16 17 C 0.26 3.03 1.02 -26.64 -0.03 3.01 16 18 C -0.11 -1.51 4.78 -26.53 -0.13 -1.64 16 19 C -0.14 -2.18 3.03 -92.02 -0.28 -2.46 16 20 H 0.13 1.91 7.84 -51.93 -0.41 1.51 16 21 C 0.50 10.61 7.79 -10.65 -0.08 10.53 16 22 O -0.51 -12.19 17.59 5.53 0.10 -12.09 16 23 O -0.36 -3.79 9.57 -59.03 -0.56 -4.36 16 24 C 0.01 0.09 7.89 38.16 0.30 0.39 16 25 C 0.02 0.15 8.07 38.16 0.31 0.46 16 26 O -0.37 -4.26 10.84 -59.03 -0.64 -4.90 16 27 H 0.05 1.25 3.27 -51.93 -0.17 1.08 16 28 H 0.03 0.65 8.14 -51.93 -0.42 0.22 16 29 H 0.07 1.51 8.14 -51.93 -0.42 1.09 16 30 H 0.27 7.62 8.31 -40.82 -0.34 7.28 16 31 H 0.10 0.92 7.91 -51.93 -0.41 0.51 16 32 H 0.10 1.00 8.14 -51.93 -0.42 0.58 16 33 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 35 H 0.09 1.40 8.12 -51.93 -0.42 0.98 16 36 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 37 H 0.08 0.55 8.14 -51.92 -0.42 0.12 16 38 H 0.11 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.10 0.55 8.14 -51.93 -0.42 0.12 16 40 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 LS Contribution 320.62 15.07 4.83 4.83 Total: -1.00 -34.47 320.62 -6.03 -40.50 By element: Atomic # 1 Polarization: 5.43 SS G_CDS: -5.59 Total: -0.17 kcal Atomic # 6 Polarization: -0.45 SS G_CDS: -1.02 Total: -1.47 kcal Atomic # 7 Polarization: -41.07 SS G_CDS: 1.00 Total: -40.07 kcal Atomic # 8 Polarization: -20.24 SS G_CDS: -1.11 Total: -21.34 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -4.14 Total: 17.72 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -34.47 -6.03 -40.50 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000887286931.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.383 kcal (2) G-P(sol) polarization free energy of solvation -34.471 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.855 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.504 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds