Wall clock time and date at job start Tue Mar 31 2020 07:43:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.47497 * 2 1 4 4 C 1.50698 * 109.47105 * 120.00583 * 2 1 3 5 5 H 1.08006 * 120.00325 * 119.99901 * 4 2 1 6 6 C 1.37884 * 120.00052 * 299.99695 * 4 2 1 7 7 N 1.31511 * 119.99898 * 180.02562 * 6 4 2 8 8 Si 1.86804 * 119.99653 * 359.97438 * 6 4 2 9 9 H 1.48497 * 109.46646 * 90.00153 * 8 6 4 10 10 H 1.48498 * 109.46736 * 209.99846 * 8 6 4 11 11 H 1.48494 * 109.47128 * 330.00169 * 8 6 4 12 12 N 1.46503 * 109.46765 * 240.00163 * 2 1 3 13 13 N 1.39529 * 124.46556 * 300.04276 * 12 2 1 14 14 C 1.26309 * 112.88999 * 178.30126 * 13 12 2 15 15 C 1.50978 * 130.31277 * 172.60909 * 14 13 12 16 16 C 1.53810 * 106.71238 * 234.80495 * 15 14 13 17 17 C 1.52840 * 109.89295 * 308.70766 * 16 15 14 18 18 C 1.53327 * 111.20692 * 63.80989 * 17 16 15 19 19 C 1.52248 * 107.50214 * 356.93933 * 14 13 12 20 20 H 1.09004 * 112.19309 * 246.13847 * 19 14 13 21 21 C 1.35282 * 124.46493 * 120.00147 * 12 2 1 22 22 O 1.21306 * 127.55036 * 5.56521 * 21 12 2 23 23 O 1.43848 * 109.20250 * 303.54392 * 17 16 15 24 24 C 1.44757 * 104.83712 * 216.20914 * 23 17 16 25 25 C 1.54904 * 101.70351 * 36.16153 * 24 23 17 26 26 O 1.43422 * 109.48187 * 184.61807 * 17 16 15 27 27 H 1.09001 * 109.46894 * 299.99685 * 1 2 3 28 28 H 1.08996 * 109.47272 * 59.99560 * 1 2 3 29 29 H 1.08999 * 109.47497 * 180.02562 * 1 2 3 30 30 H 0.97002 * 119.99944 * 179.97438 * 7 6 4 31 31 H 1.08999 * 110.07702 * 115.46138 * 15 14 13 32 32 H 1.08999 * 109.91255 * 354.05803 * 15 14 13 33 33 H 1.09002 * 109.38617 * 188.60220 * 16 15 14 34 34 H 1.08996 * 109.38311 * 68.80969 * 16 15 14 35 35 H 1.08995 * 109.68507 * 54.44431 * 18 17 16 36 36 H 1.08991 * 109.68649 * 175.00736 * 18 17 16 37 37 H 1.09008 * 110.98489 * 278.05411 * 24 23 17 38 38 H 1.09000 * 110.98513 * 154.26349 * 24 23 17 39 39 H 1.08998 * 110.69519 * 206.02065 * 25 24 23 40 40 H 1.09000 * 110.69105 * 82.82071 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 1.2304 5 1 2.6532 -1.5887 1.1312 6 6 1.6993 -0.2395 2.4828 7 7 2.1381 -0.8593 3.5565 8 14 0.6260 1.2797 2.6542 9 1 -0.8019 0.8744 2.6994 10 1 0.9773 1.9951 3.9072 11 1 0.8493 2.1772 1.4924 12 7 2.0182 -0.6906 -1.1962 13 7 1.7384 -2.0212 -1.5093 14 6 2.2420 -2.3834 -2.6096 15 6 2.3139 -3.7496 -3.2483 16 6 3.7975 -4.0180 -3.5526 17 6 4.3916 -2.8400 -4.3242 18 6 4.3769 -1.5601 -3.4801 19 6 2.9198 -1.1671 -3.2254 20 1 2.4307 -0.8446 -4.1446 21 6 2.7992 -0.1220 -2.1433 22 8 3.2945 0.9852 -2.1262 23 8 3.6213 -2.6204 -5.5191 24 6 4.5911 -2.2216 -6.5171 25 6 5.8116 -3.0961 -6.1364 26 8 5.7425 -3.1449 -4.6969 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 1.9041 -0.5278 4.4375 31 1 1.7356 -3.7616 -4.1721 32 1 1.9326 -4.5024 -2.5584 33 1 3.8857 -4.9244 -4.1516 34 1 4.3409 -4.1485 -2.6168 35 1 4.8798 -1.7410 -2.5302 36 1 4.8845 -0.7596 -4.0181 37 1 4.8280 -1.1612 -6.4294 38 1 4.2386 -2.4594 -7.5208 39 1 6.7393 -2.6252 -6.4616 40 1 5.7166 -4.0957 -6.5605 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000887286931.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:43:12 Heat of formation + Delta-G solvation = -80.909371 kcal Electronic energy + Delta-G solvation = -24845.857902 eV Core-core repulsion = 21240.622963 eV Total energy + Delta-G solvation = -3605.234938 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.81447 -41.37359 -38.71205 -37.26753 -35.99170 -35.45362 -33.68577 -32.77986 -30.96447 -30.03206 -27.73125 -27.29295 -25.38656 -24.11431 -22.91735 -22.67641 -21.38979 -20.30312 -18.93759 -18.14211 -18.01132 -17.55300 -17.29916 -16.75203 -16.49035 -16.11885 -15.77164 -15.40420 -15.02181 -14.87010 -14.61324 -14.50264 -14.27190 -14.08861 -13.94485 -13.84390 -13.74663 -13.33429 -13.07425 -12.92405 -12.79068 -12.53752 -12.38613 -12.21047 -11.97615 -11.73777 -11.50864 -11.40670 -11.07665 -10.98134 -10.84767 -10.36614 -9.60999 -8.40674 -6.47701 0.60861 1.23109 1.30768 1.38127 1.40579 1.67683 2.21774 2.36110 2.72393 2.84781 2.93133 3.07016 3.53532 3.68770 3.77705 3.85476 3.88615 4.11988 4.15797 4.25134 4.27792 4.29827 4.37736 4.43552 4.48648 4.66296 4.68856 4.69744 4.76849 4.84726 4.96286 4.99331 5.03061 5.10854 5.19932 5.30857 5.38508 5.55234 6.10500 6.13026 6.52405 6.70466 6.90692 7.16534 8.76219 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.030489 B = 0.004310 C = 0.004205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 918.138671 B = 6494.318450 C = 6656.739782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.257 3.743 3 H 0.044 0.956 4 C -0.529 4.529 5 H 0.035 0.965 6 C 0.023 3.977 7 N -0.937 5.937 8 Si 0.945 3.055 9 H -0.250 1.250 10 H -0.288 1.288 11 H -0.256 1.256 12 N -0.453 5.453 13 N -0.241 5.241 14 C 0.091 3.909 15 C -0.022 4.022 16 C -0.114 4.114 17 C 0.271 3.729 18 C -0.106 4.106 19 C -0.123 4.123 20 H 0.163 0.837 21 C 0.480 3.520 22 O -0.550 6.550 23 O -0.369 6.369 24 C 0.008 3.992 25 C 0.014 3.986 26 O -0.395 6.395 27 H 0.054 0.946 28 H 0.057 0.943 29 H 0.065 0.935 30 H 0.272 0.728 31 H 0.130 0.870 32 H 0.108 0.892 33 H 0.120 0.880 34 H 0.075 0.925 35 H 0.060 0.940 36 H 0.086 0.914 37 H 0.075 0.925 38 H 0.140 0.860 39 H 0.114 0.886 40 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.204 -7.332 -24.505 25.673 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.155 3.845 3 H 0.062 0.938 4 C -0.567 4.567 5 H 0.053 0.947 6 C -0.176 4.176 7 N -0.576 5.576 8 Si 0.771 3.229 9 H -0.175 1.175 10 H -0.215 1.215 11 H -0.180 1.180 12 N -0.270 5.270 13 N -0.045 5.045 14 C -0.104 4.104 15 C -0.061 4.061 16 C -0.152 4.152 17 C 0.194 3.806 18 C -0.146 4.146 19 C -0.147 4.147 20 H 0.180 0.820 21 C 0.268 3.732 22 O -0.427 6.427 23 O -0.290 6.290 24 C -0.068 4.068 25 C -0.061 4.061 26 O -0.317 6.317 27 H 0.072 0.928 28 H 0.076 0.924 29 H 0.084 0.916 30 H 0.081 0.919 31 H 0.148 0.852 32 H 0.127 0.873 33 H 0.138 0.862 34 H 0.094 0.906 35 H 0.079 0.921 36 H 0.105 0.895 37 H 0.093 0.907 38 H 0.158 0.842 39 H 0.132 0.868 40 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 1.809 -6.928 -23.196 24.276 hybrid contribution 0.403 1.419 0.395 1.527 sum 2.212 -5.509 -22.801 23.561 Atomic orbital electron populations 1.22262 0.95579 1.02444 1.00343 1.19114 0.92733 0.91489 0.81118 0.93813 1.21161 1.32422 1.13011 0.90118 0.94701 1.25727 0.97062 0.99995 0.94854 1.70003 1.46724 1.42154 0.98695 0.85920 0.79826 0.79426 0.77776 1.17510 1.21462 1.18046 1.50262 1.46673 1.07780 1.22299 1.74275 1.18241 0.95475 1.16482 1.25999 0.94478 0.98486 0.91395 1.20519 0.97138 0.86633 1.01814 1.21945 0.94561 0.97751 1.00976 1.23147 0.78279 0.92373 0.86845 1.21879 0.92322 0.99176 1.01204 1.21815 1.00080 0.93380 0.99428 0.82037 1.21859 0.78124 0.88218 0.84993 1.90658 1.50119 1.21930 1.79978 1.89265 1.31282 1.88296 1.20109 1.24659 0.87733 0.99569 0.94828 1.24504 1.00670 1.01936 0.79030 1.88926 1.27687 1.91558 1.23527 0.92811 0.92356 0.91611 0.91925 0.85185 0.87328 0.86214 0.90636 0.92088 0.89498 0.90692 0.84212 0.86753 0.88601 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.66 8.89 71.98 0.64 -6.02 16 2 C 0.26 13.40 2.58 44.24 0.11 13.51 16 3 H 0.04 2.42 6.76 -2.39 -0.02 2.41 16 4 C -0.53 -32.07 9.30 25.60 0.24 -31.83 16 5 H 0.03 2.38 8.06 -2.91 -0.02 2.35 16 6 C 0.02 1.36 5.45 84.66 0.46 1.82 16 7 N -0.94 -59.40 13.96 21.45 0.30 -59.10 16 8 Si 0.95 45.41 24.37 68.60 1.67 47.08 16 9 H -0.25 -11.01 6.87 99.48 0.68 -10.32 16 10 H -0.29 -13.55 7.11 99.48 0.71 -12.85 16 11 H -0.26 -11.84 6.53 99.48 0.65 -11.19 16 12 N -0.45 -21.38 3.25 -445.13 -1.44 -22.82 16 13 N -0.24 -9.92 11.75 -40.79 -0.48 -10.40 16 14 C 0.09 2.78 6.82 47.35 0.32 3.11 16 15 C -0.02 -0.43 6.12 30.21 0.19 -0.24 16 16 C -0.11 -2.10 5.36 30.81 0.17 -1.94 16 17 C 0.27 5.61 1.02 30.65 0.03 5.64 16 18 C -0.11 -2.96 4.78 30.72 0.15 -2.82 16 19 C -0.12 -3.86 3.03 -11.70 -0.04 -3.89 16 20 H 0.16 4.22 7.84 -2.38 -0.02 4.20 16 21 C 0.48 21.04 7.79 87.65 0.68 21.73 16 22 O -0.55 -27.31 17.59 -3.11 -0.05 -27.36 16 23 O -0.37 -6.23 9.57 -126.22 -1.21 -7.44 16 24 C 0.01 0.08 7.89 72.63 0.57 0.66 16 25 C 0.01 0.16 8.07 72.63 0.59 0.74 16 26 O -0.40 -8.06 10.84 -126.22 -1.37 -9.43 16 27 H 0.05 2.38 3.27 -2.39 -0.01 2.37 16 28 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16 29 H 0.06 2.93 8.14 -2.39 -0.02 2.91 16 30 H 0.27 15.93 8.31 -92.71 -0.77 15.16 16 31 H 0.13 1.82 7.91 -2.39 -0.02 1.80 16 32 H 0.11 1.94 8.14 -2.39 -0.02 1.92 16 33 H 0.12 1.53 8.14 -2.39 -0.02 1.51 16 34 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 35 H 0.06 2.01 8.12 -2.39 -0.02 2.00 16 36 H 0.09 2.32 8.14 -2.39 -0.02 2.30 16 37 H 0.07 0.85 8.14 -2.38 -0.02 0.83 16 38 H 0.14 0.66 8.14 -2.39 -0.02 0.64 16 39 H 0.11 0.90 8.14 -2.39 -0.02 0.88 16 40 H 0.10 0.73 8.14 -2.39 -0.02 0.71 16 Total: -1.00 -80.00 320.62 2.50 -77.50 By element: Atomic # 1 Polarization: 10.54 SS G_CDS: 0.97 Total: 11.51 kcal Atomic # 6 Polarization: -3.65 SS G_CDS: 4.11 Total: 0.46 kcal Atomic # 7 Polarization: -90.69 SS G_CDS: -1.62 Total: -92.32 kcal Atomic # 8 Polarization: -41.60 SS G_CDS: -2.63 Total: -44.24 kcal Atomic # 14 Polarization: 45.41 SS G_CDS: 1.67 Total: 47.08 kcal Total: -80.00 2.50 -77.50 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000887286931.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.411 kcal (2) G-P(sol) polarization free energy of solvation -79.997 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.499 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.909 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds