Wall clock time and date at job start Tue Mar 31 2020 06:55:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42901 * 113.99973 * 2 1 4 4 C 1.52996 * 109.47111 * 179.97438 * 3 2 1 5 5 H 1.09003 * 109.47518 * 184.99665 * 4 3 2 6 6 S 1.81403 * 109.47336 * 64.99762 * 4 3 2 7 7 C 1.81404 * 102.99936 * 64.99669 * 6 4 3 8 8 C 1.53002 * 109.47408 * 180.02562 * 7 6 4 9 9 C 1.52994 * 109.47215 * 300.00515 * 8 7 6 10 10 C 1.53001 * 109.46814 * 60.00087 * 8 7 6 11 11 C 1.50699 * 109.47085 * 180.02562 * 8 7 6 12 12 H 1.07991 * 119.99967 * 1.32445 * 11 8 7 13 13 C 1.37882 * 119.99483 * 181.32320 * 11 8 7 14 14 N 1.31512 * 119.99350 * 194.00620 * 13 11 8 15 15 Si 1.86795 * 120.00259 * 14.00970 * 13 11 8 16 16 H 1.48506 * 109.47417 * 84.53886 * 15 13 11 17 17 H 1.48497 * 109.47276 * 204.54348 * 15 13 11 18 18 H 1.48503 * 109.47276 * 324.54135 * 15 13 11 19 19 C 1.50701 * 109.47425 * 304.99565 * 4 3 2 20 20 C 1.38237 * 119.99337 * 59.72805 * 19 4 3 21 21 C 1.38238 * 119.99266 * 179.78678 * 20 19 4 22 22 C 1.38235 * 120.00121 * 0.44295 * 21 20 19 23 23 C 1.38226 * 119.99985 * 359.80896 * 22 21 20 24 24 C 1.38232 * 120.00400 * 359.97438 * 23 22 21 25 25 H 1.09006 * 109.46620 * 60.01013 * 1 2 3 26 26 H 1.08996 * 109.46598 * 179.97438 * 1 2 3 27 27 H 1.08990 * 109.47693 * 300.00789 * 1 2 3 28 28 H 1.08998 * 109.47570 * 59.99289 * 3 2 1 29 29 H 1.09001 * 109.46952 * 299.99211 * 3 2 1 30 30 H 1.09006 * 109.47048 * 60.00498 * 7 6 4 31 31 H 1.08994 * 109.47106 * 300.00660 * 7 6 4 32 32 H 1.09004 * 109.47528 * 69.40307 * 9 8 7 33 33 H 1.08999 * 109.47360 * 189.40610 * 9 8 7 34 34 H 1.09003 * 109.47002 * 309.40710 * 9 8 7 35 35 H 1.09007 * 109.46977 * 60.00028 * 10 8 7 36 36 H 1.09004 * 109.47285 * 179.97438 * 10 8 7 37 37 H 1.09003 * 109.47581 * 300.00432 * 10 8 7 38 38 H 0.97007 * 119.99412 * 180.02562 * 14 13 11 39 39 H 1.07998 * 120.00619 * 0.02562 * 20 19 4 40 40 H 1.08008 * 119.99736 * 180.27153 * 21 20 19 41 41 H 1.08005 * 119.99523 * 179.82885 * 22 21 20 42 42 H 1.08001 * 119.99820 * 180.02562 * 23 22 21 43 43 H 1.07995 * 120.00509 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 1 3.9785 2.1766 0.0902 6 16 4.0818 0.4160 -1.5490 7 6 3.6093 1.6409 -2.8008 8 6 4.0085 1.1329 -4.1877 9 6 5.5219 0.9137 -4.2344 10 6 3.2927 -0.1891 -4.4721 11 6 3.6165 2.1508 -5.2276 12 1 3.1505 3.0776 -4.9272 13 6 3.8527 1.8987 -6.5624 14 7 3.7724 2.8748 -7.4401 15 14 4.2868 0.1709 -7.1241 16 1 3.0406 -0.6092 -7.3339 17 1 5.0473 0.2408 -8.3976 18 1 5.1174 -0.4927 -6.0873 19 6 3.9714 0.3329 1.1649 20 6 3.5283 -0.9723 1.2705 21 6 3.9318 -1.7549 2.3361 22 6 4.7710 -1.2296 3.3008 23 6 5.2098 0.0771 3.1979 24 6 4.8100 0.8584 2.1300 25 1 -0.3633 0.5137 -0.8901 26 1 -0.3632 -1.0277 -0.0005 27 1 -0.3634 0.5139 0.8898 28 1 1.6886 1.8465 0.8899 29 1 1.6887 1.8463 -0.8901 30 1 4.1189 2.5829 -2.5980 31 1 2.5310 1.7967 -2.7678 32 1 5.7856 0.0639 -3.6049 33 1 5.8287 0.7143 -5.2612 34 1 6.0298 1.8069 -3.8704 35 1 2.2144 -0.0330 -4.4388 36 1 3.5767 -0.5509 -5.4603 37 1 3.5766 -0.9252 -3.7199 38 1 3.9383 2.6974 -8.3792 39 1 2.8701 -1.3816 0.5185 40 1 3.5892 -2.7761 2.4163 41 1 5.0840 -1.8404 4.1348 42 1 5.8658 0.4873 3.9514 43 1 5.1525 1.8795 2.0498 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000901665413.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:55:41 Heat of formation + Delta-G solvation = -9.948745 kcal Electronic energy + Delta-G solvation = -21783.326237 eV Core-core repulsion = 18727.461597 eV Total energy + Delta-G solvation = -3055.864640 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 294.139 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.41019 -37.68698 -36.34067 -33.38256 -31.82487 -30.83170 -29.20486 -26.90586 -26.28308 -26.18285 -24.87233 -23.56528 -22.50708 -21.04778 -19.18978 -17.01498 -16.70304 -16.12730 -15.86644 -15.57987 -15.41003 -15.19107 -14.97321 -14.18698 -13.65973 -13.40247 -13.23592 -13.07759 -12.94140 -12.80794 -12.64480 -12.25459 -12.12628 -11.89334 -11.69491 -11.31328 -11.19565 -11.01359 -10.75956 -10.61365 -10.13437 -10.05157 -9.92483 -9.70114 -9.48596 -8.88439 -8.80276 -8.65840 -8.55513 -8.40481 -7.04014 -6.13022 -4.09825 1.23161 1.48571 2.25072 3.16756 3.30755 3.40713 3.43691 3.71028 3.94135 4.40682 4.62809 4.79352 4.99877 5.02039 5.19786 5.20883 5.23147 5.31455 5.38868 5.44854 5.48383 5.58802 5.66422 5.72692 5.80015 5.86904 5.99685 6.17632 6.24099 6.44577 6.48157 6.59139 6.60597 6.64554 6.71199 6.78511 6.87032 7.01025 7.05096 7.14901 7.28943 7.50826 7.76081 8.46210 8.89324 9.52071 10.99935 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.022861 B = 0.004247 C = 0.004016 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1224.492178 B = 6591.171033 C = 6970.328347 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.369 6.369 3 C 0.071 3.929 4 C -0.029 4.029 5 H 0.100 0.900 6 S -0.236 6.236 7 C -0.052 4.052 8 C 0.056 3.944 9 C -0.141 4.141 10 C -0.146 4.146 11 C -0.512 4.512 12 H 0.072 0.928 13 C 0.077 3.923 14 N -0.894 5.894 15 Si 0.883 3.117 16 H -0.286 1.286 17 H -0.306 1.306 18 H -0.246 1.246 19 C -0.059 4.059 20 C -0.078 4.078 21 C -0.129 4.129 22 C -0.122 4.122 23 C -0.129 4.129 24 C -0.110 4.110 25 H 0.042 0.958 26 H 0.084 0.916 27 H 0.035 0.965 28 H 0.052 0.948 29 H 0.058 0.942 30 H 0.071 0.929 31 H 0.070 0.930 32 H 0.034 0.966 33 H 0.053 0.947 34 H 0.044 0.956 35 H 0.049 0.951 36 H 0.038 0.962 37 H 0.044 0.956 38 H 0.264 0.736 39 H 0.143 0.857 40 H 0.119 0.881 41 H 0.116 0.884 42 H 0.118 0.882 43 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.165 -5.919 20.101 21.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.288 6.288 3 C -0.008 4.008 4 C -0.157 4.157 5 H 0.119 0.881 6 S -0.005 6.005 7 C -0.200 4.200 8 C 0.053 3.947 9 C -0.198 4.198 10 C -0.203 4.203 11 C -0.551 4.551 12 H 0.091 0.909 13 C -0.126 4.126 14 N -0.531 5.531 15 Si 0.716 3.284 16 H -0.213 1.213 17 H -0.234 1.234 18 H -0.172 1.172 19 C -0.061 4.061 20 C -0.097 4.097 21 C -0.147 4.147 22 C -0.141 4.141 23 C -0.147 4.147 24 C -0.130 4.130 25 H 0.060 0.940 26 H 0.103 0.897 27 H 0.054 0.946 28 H 0.070 0.930 29 H 0.076 0.924 30 H 0.090 0.910 31 H 0.089 0.911 32 H 0.053 0.947 33 H 0.071 0.929 34 H 0.063 0.937 35 H 0.068 0.932 36 H 0.056 0.944 37 H 0.063 0.937 38 H 0.074 0.926 39 H 0.161 0.839 40 H 0.137 0.863 41 H 0.135 0.865 42 H 0.136 0.864 43 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -1.537 -6.979 19.744 20.998 hybrid contribution -0.695 0.698 -0.320 1.036 sum -2.232 -6.281 19.425 20.537 Atomic orbital electron populations 1.22717 0.81607 1.02629 0.99726 1.87969 1.18946 1.26555 1.95285 1.22573 0.92127 0.85675 1.00446 1.22190 0.96212 1.01306 0.96012 0.88138 1.87020 1.80254 1.33992 0.99204 1.23672 1.02704 0.97700 0.95892 1.18277 0.92554 0.93751 0.90084 1.22286 0.97661 0.99287 1.00604 1.22356 1.00623 0.98202 0.99158 1.20771 1.41417 1.03176 0.89727 0.90944 1.24938 0.94201 0.96784 0.96642 1.69953 1.49097 1.31342 1.02677 0.87312 0.78704 0.85762 0.76664 1.21322 1.23441 1.17197 1.19177 0.97990 0.94647 0.94240 1.21381 0.97711 0.92961 0.97605 1.21177 0.98700 0.99806 0.95027 1.21121 0.98321 0.95600 0.99041 1.21009 1.00804 0.94506 0.98365 1.21020 0.97646 0.99871 0.94415 0.93952 0.89700 0.94592 0.93024 0.92416 0.91033 0.91131 0.94722 0.92872 0.93667 0.93196 0.94388 0.93665 0.92599 0.83908 0.86320 0.86549 0.86360 0.86300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 11.01 101.05 1.11 1.42 16 2 O -0.37 -4.92 7.28 -35.23 -0.26 -5.18 16 3 C 0.07 0.91 5.46 37.16 0.20 1.11 16 4 C -0.03 -0.41 2.91 -27.88 -0.08 -0.49 16 5 H 0.10 1.28 7.88 -51.92 -0.41 0.88 16 6 S -0.24 -4.09 17.80 -107.50 -1.91 -6.01 16 7 C -0.05 -1.01 4.56 37.16 0.17 -0.84 16 8 C 0.06 1.27 0.52 -155.66 -0.08 1.19 16 9 C -0.14 -3.14 7.41 37.15 0.28 -2.87 16 10 C -0.15 -3.25 7.46 37.16 0.28 -2.98 16 11 C -0.51 -13.93 8.62 -34.44 -0.30 -14.23 16 12 H 0.07 2.12 7.99 -52.49 -0.42 1.70 16 13 C 0.08 2.18 5.32 -17.82 -0.09 2.09 16 14 N -0.89 -26.97 13.96 55.43 0.77 -26.20 16 15 Si 0.88 21.95 22.79 -169.99 -3.87 18.08 16 16 H -0.29 -7.06 7.10 56.52 0.40 -6.66 16 17 H -0.31 -7.70 7.11 56.52 0.40 -7.30 16 18 H -0.25 -5.76 4.65 56.52 0.26 -5.49 16 19 C -0.06 -0.79 4.78 -104.62 -0.50 -1.29 16 20 C -0.08 -1.04 8.23 -39.58 -0.33 -1.37 16 21 C -0.13 -1.50 10.05 -39.58 -0.40 -1.90 16 22 C -0.12 -1.30 10.05 -39.59 -0.40 -1.69 16 23 C -0.13 -1.38 10.05 -39.59 -0.40 -1.78 16 24 C -0.11 -1.31 9.67 -39.59 -0.38 -1.69 16 25 H 0.04 0.44 8.14 -51.93 -0.42 0.02 16 26 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 27 H 0.04 0.32 8.14 -51.93 -0.42 -0.10 16 28 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 29 H 0.06 0.78 6.73 -51.93 -0.35 0.43 16 30 H 0.07 1.38 8.14 -51.92 -0.42 0.96 16 31 H 0.07 1.36 7.02 -51.93 -0.36 0.99 16 32 H 0.03 0.72 7.29 -51.93 -0.38 0.34 16 33 H 0.05 1.24 4.30 -51.93 -0.22 1.02 16 34 H 0.04 0.97 8.12 -51.93 -0.42 0.55 16 35 H 0.05 1.08 8.14 -51.92 -0.42 0.66 16 36 H 0.04 0.88 2.25 -51.93 -0.12 0.77 16 37 H 0.04 0.93 6.92 -51.93 -0.36 0.57 16 38 H 0.26 7.53 8.31 -40.82 -0.34 7.20 16 39 H 0.14 2.06 6.14 -52.49 -0.32 1.74 16 40 H 0.12 1.14 8.06 -52.48 -0.42 0.72 16 41 H 0.12 0.95 8.06 -52.48 -0.42 0.53 16 42 H 0.12 0.99 8.06 -52.49 -0.42 0.57 16 43 H 0.12 1.22 7.95 -52.49 -0.42 0.80 16 LS Contribution 340.67 15.07 5.13 5.13 Total: -1.00 -30.18 340.67 -7.91 -38.10 By element: Atomic # 1 Polarization: 8.25 SS G_CDS: -6.86 Total: 1.39 kcal Atomic # 6 Polarization: -24.40 SS G_CDS: -0.92 Total: -25.32 kcal Atomic # 7 Polarization: -26.97 SS G_CDS: 0.77 Total: -26.20 kcal Atomic # 8 Polarization: -4.92 SS G_CDS: -0.26 Total: -5.18 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -3.87 Total: 18.08 kcal Atomic # 16 Polarization: -4.09 SS G_CDS: -1.91 Total: -6.01 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -30.18 -7.91 -38.10 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000901665413.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.147 kcal (2) G-P(sol) polarization free energy of solvation -30.183 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.035 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.913 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.096 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.949 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds