Wall clock time and date at job start Tue Mar 31 2020 06:55:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42901 * 113.99973 * 2 1 4 4 C 1.52996 * 109.47111 * 179.97438 * 3 2 1 5 5 H 1.09003 * 109.47518 * 184.99665 * 4 3 2 6 6 S 1.81403 * 109.47336 * 64.99762 * 4 3 2 7 7 C 1.81404 * 102.99936 * 64.99669 * 6 4 3 8 8 C 1.53002 * 109.47408 * 180.02562 * 7 6 4 9 9 C 1.52994 * 109.47215 * 300.00515 * 8 7 6 10 10 C 1.53001 * 109.46814 * 60.00087 * 8 7 6 11 11 C 1.50699 * 109.47085 * 180.02562 * 8 7 6 12 12 H 1.07991 * 119.99967 * 1.32445 * 11 8 7 13 13 C 1.37882 * 119.99483 * 181.32320 * 11 8 7 14 14 N 1.31512 * 119.99350 * 194.00620 * 13 11 8 15 15 Si 1.86795 * 120.00259 * 14.00970 * 13 11 8 16 16 H 1.48506 * 109.47417 * 84.53886 * 15 13 11 17 17 H 1.48497 * 109.47276 * 204.54348 * 15 13 11 18 18 H 1.48503 * 109.47276 * 324.54135 * 15 13 11 19 19 C 1.50701 * 109.47425 * 304.99565 * 4 3 2 20 20 C 1.38237 * 119.99337 * 59.72805 * 19 4 3 21 21 C 1.38238 * 119.99266 * 179.78678 * 20 19 4 22 22 C 1.38235 * 120.00121 * 0.44295 * 21 20 19 23 23 C 1.38226 * 119.99985 * 359.80896 * 22 21 20 24 24 C 1.38232 * 120.00400 * 359.97438 * 23 22 21 25 25 H 1.09006 * 109.46620 * 60.01013 * 1 2 3 26 26 H 1.08996 * 109.46598 * 179.97438 * 1 2 3 27 27 H 1.08990 * 109.47693 * 300.00789 * 1 2 3 28 28 H 1.08998 * 109.47570 * 59.99289 * 3 2 1 29 29 H 1.09001 * 109.46952 * 299.99211 * 3 2 1 30 30 H 1.09006 * 109.47048 * 60.00498 * 7 6 4 31 31 H 1.08994 * 109.47106 * 300.00660 * 7 6 4 32 32 H 1.09004 * 109.47528 * 69.40307 * 9 8 7 33 33 H 1.08999 * 109.47360 * 189.40610 * 9 8 7 34 34 H 1.09003 * 109.47002 * 309.40710 * 9 8 7 35 35 H 1.09007 * 109.46977 * 60.00028 * 10 8 7 36 36 H 1.09004 * 109.47285 * 179.97438 * 10 8 7 37 37 H 1.09003 * 109.47581 * 300.00432 * 10 8 7 38 38 H 0.97007 * 119.99412 * 180.02562 * 14 13 11 39 39 H 1.07998 * 120.00619 * 0.02562 * 20 19 4 40 40 H 1.08008 * 119.99736 * 180.27153 * 21 20 19 41 41 H 1.08005 * 119.99523 * 179.82885 * 22 21 20 42 42 H 1.08001 * 119.99820 * 180.02562 * 23 22 21 43 43 H 1.07995 * 120.00509 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 1 3.9785 2.1766 0.0902 6 16 4.0818 0.4160 -1.5490 7 6 3.6093 1.6409 -2.8008 8 6 4.0085 1.1329 -4.1877 9 6 5.5219 0.9137 -4.2344 10 6 3.2927 -0.1891 -4.4721 11 6 3.6165 2.1508 -5.2276 12 1 3.1505 3.0776 -4.9272 13 6 3.8527 1.8987 -6.5624 14 7 3.7724 2.8748 -7.4401 15 14 4.2868 0.1709 -7.1241 16 1 3.0406 -0.6092 -7.3339 17 1 5.0473 0.2408 -8.3976 18 1 5.1174 -0.4927 -6.0873 19 6 3.9714 0.3329 1.1649 20 6 3.5283 -0.9723 1.2705 21 6 3.9318 -1.7549 2.3361 22 6 4.7710 -1.2296 3.3008 23 6 5.2098 0.0771 3.1979 24 6 4.8100 0.8584 2.1300 25 1 -0.3633 0.5137 -0.8901 26 1 -0.3632 -1.0277 -0.0005 27 1 -0.3634 0.5139 0.8898 28 1 1.6886 1.8465 0.8899 29 1 1.6887 1.8463 -0.8901 30 1 4.1189 2.5829 -2.5980 31 1 2.5310 1.7967 -2.7678 32 1 5.7856 0.0639 -3.6049 33 1 5.8287 0.7143 -5.2612 34 1 6.0298 1.8069 -3.8704 35 1 2.2144 -0.0330 -4.4388 36 1 3.5767 -0.5509 -5.4603 37 1 3.5766 -0.9252 -3.7199 38 1 3.9383 2.6974 -8.3792 39 1 2.8701 -1.3816 0.5185 40 1 3.5892 -2.7761 2.4163 41 1 5.0840 -1.8404 4.1348 42 1 5.8658 0.4873 3.9514 43 1 5.1525 1.8795 2.0498 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000901665413.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:55:40 Heat of formation + Delta-G solvation = -26.120702 kcal Electronic energy + Delta-G solvation = -21784.027506 eV Core-core repulsion = 18727.461597 eV Total energy + Delta-G solvation = -3056.565909 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 294.139 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.31093 -38.62290 -38.19206 -34.33660 -33.97118 -31.69070 -30.17554 -28.45602 -27.99043 -27.19749 -26.99993 -24.52860 -23.37308 -22.05057 -21.01183 -18.20135 -17.94742 -17.73509 -17.34862 -16.77756 -16.52518 -16.29754 -15.88944 -15.35768 -15.25759 -14.92457 -14.79785 -14.58222 -14.09343 -13.98248 -13.81997 -13.77279 -13.54894 -13.07082 -12.99753 -12.72964 -12.53382 -12.41151 -12.05078 -11.94925 -11.83971 -11.72887 -11.57886 -11.28982 -10.72430 -10.57522 -10.46610 -10.37103 -9.70771 -9.52044 -8.41294 -8.32799 -6.32321 0.24305 0.61210 1.05699 1.33095 1.37401 1.46826 1.78478 2.32478 2.78805 3.04029 3.04707 3.65436 3.80861 4.06224 4.11001 4.16561 4.25938 4.34068 4.38842 4.40884 4.44502 4.51970 4.57955 4.61525 4.72253 4.74004 4.82719 4.84287 4.87777 4.89562 4.96935 5.10601 5.14770 5.22441 5.30894 5.46694 5.64079 5.67777 5.73298 5.75338 5.79759 6.18293 6.24223 6.29146 6.70497 7.32619 8.83778 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.022861 B = 0.004247 C = 0.004016 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1224.492178 B = 6591.171033 C = 6970.328347 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.385 6.385 3 C 0.072 3.928 4 C -0.019 4.019 5 H 0.111 0.889 6 S -0.247 6.247 7 C -0.047 4.047 8 C 0.050 3.950 9 C -0.136 4.136 10 C -0.142 4.142 11 C -0.510 4.510 12 H 0.036 0.964 13 C 0.025 3.975 14 N -0.942 5.942 15 Si 0.935 3.065 16 H -0.282 1.282 17 H -0.311 1.311 18 H -0.220 1.220 19 C -0.077 4.077 20 C -0.093 4.093 21 C -0.137 4.137 22 C -0.121 4.121 23 C -0.130 4.130 24 C -0.117 4.117 25 H 0.037 0.963 26 H 0.097 0.903 27 H 0.051 0.949 28 H 0.072 0.928 29 H 0.046 0.954 30 H 0.066 0.934 31 H 0.066 0.934 32 H 0.053 0.947 33 H 0.040 0.960 34 H 0.045 0.955 35 H 0.047 0.953 36 H 0.030 0.970 37 H 0.063 0.937 38 H 0.265 0.735 39 H 0.128 0.872 40 H 0.135 0.865 41 H 0.144 0.856 42 H 0.144 0.856 43 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.488 -7.658 22.899 24.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.304 6.304 3 C -0.007 4.007 4 C -0.147 4.147 5 H 0.129 0.871 6 S -0.015 6.015 7 C -0.195 4.195 8 C 0.048 3.952 9 C -0.193 4.193 10 C -0.199 4.199 11 C -0.549 4.549 12 H 0.055 0.945 13 C -0.173 4.173 14 N -0.581 5.581 15 Si 0.765 3.235 16 H -0.209 1.209 17 H -0.240 1.240 18 H -0.144 1.144 19 C -0.078 4.078 20 C -0.113 4.113 21 C -0.155 4.155 22 C -0.139 4.139 23 C -0.148 4.148 24 C -0.137 4.137 25 H 0.055 0.945 26 H 0.115 0.885 27 H 0.070 0.930 28 H 0.090 0.910 29 H 0.064 0.936 30 H 0.085 0.915 31 H 0.085 0.915 32 H 0.071 0.929 33 H 0.059 0.941 34 H 0.064 0.936 35 H 0.066 0.934 36 H 0.048 0.952 37 H 0.082 0.918 38 H 0.074 0.926 39 H 0.146 0.854 40 H 0.152 0.848 41 H 0.161 0.839 42 H 0.162 0.838 43 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -0.865 -8.727 22.557 24.202 hybrid contribution -0.948 1.289 -0.997 1.885 sum -1.813 -7.438 21.560 22.878 Atomic orbital electron populations 1.22864 0.80319 1.03651 1.00231 1.87955 1.20408 1.26676 1.95393 1.22548 0.91529 0.85810 1.00799 1.22261 0.96946 1.01576 0.93903 0.87116 1.86888 1.80497 1.33501 1.00646 1.23349 1.02384 0.98253 0.95495 1.18246 0.93214 0.93048 0.90689 1.22195 0.96862 1.00140 1.00152 1.22277 1.00436 0.97986 0.99169 1.21064 1.39971 1.02891 0.90983 0.94522 1.25688 0.94551 1.00229 0.96854 1.70082 1.51459 1.33536 1.03057 0.86454 0.78945 0.81617 0.76472 1.20915 1.24041 1.14393 1.19182 0.99313 0.94774 0.94537 1.21355 0.98279 0.93421 0.98201 1.21425 0.98810 1.00509 0.94738 1.21488 0.97243 0.95902 0.99266 1.21373 1.00567 0.94488 0.98373 1.21263 0.97175 1.00819 0.94442 0.94472 0.88501 0.93016 0.91020 0.93553 0.91493 0.91546 0.92857 0.94085 0.93628 0.93376 0.95187 0.91793 0.92633 0.85431 0.84758 0.83859 0.83777 0.84938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.50 11.01 113.37 1.25 1.75 16 2 O -0.39 -9.86 7.28 -148.98 -1.09 -10.95 16 3 C 0.07 1.77 5.46 71.98 0.39 2.16 16 4 C -0.02 -0.50 2.91 29.85 0.09 -0.41 16 5 H 0.11 2.66 7.88 -2.39 -0.02 2.64 16 6 S -0.25 -8.25 17.80 -56.49 -1.01 -9.25 16 7 C -0.05 -1.82 4.56 71.98 0.33 -1.49 16 8 C 0.05 2.26 0.52 -52.93 -0.03 2.24 16 9 C -0.14 -5.90 7.41 71.98 0.53 -5.36 16 10 C -0.14 -6.11 7.46 71.98 0.54 -5.57 16 11 C -0.51 -28.39 8.62 25.60 0.22 -28.17 16 12 H 0.04 2.24 7.99 -2.91 -0.02 2.22 16 13 C 0.02 1.43 5.32 84.66 0.45 1.88 16 14 N -0.94 -58.60 13.96 21.45 0.30 -58.30 16 15 Si 0.93 45.24 22.79 68.60 1.56 46.81 16 16 H -0.28 -13.37 7.10 99.48 0.71 -12.66 16 17 H -0.31 -15.24 7.11 99.48 0.71 -14.53 16 18 H -0.22 -9.65 4.65 99.48 0.46 -9.19 16 19 C -0.08 -1.91 4.78 -19.87 -0.09 -2.00 16 20 C -0.09 -2.35 8.23 22.27 0.18 -2.17 16 21 C -0.14 -2.84 10.05 22.27 0.22 -2.62 16 22 C -0.12 -2.14 10.05 22.27 0.22 -1.91 16 23 C -0.13 -2.33 10.05 22.27 0.22 -2.11 16 24 C -0.12 -2.48 9.67 22.27 0.22 -2.26 16 25 H 0.04 0.75 8.14 -2.38 -0.02 0.73 16 26 H 0.10 1.63 8.14 -2.39 -0.02 1.61 16 27 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 28 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 29 H 0.05 1.23 6.73 -2.39 -0.02 1.21 16 30 H 0.07 2.61 8.14 -2.39 -0.02 2.59 16 31 H 0.07 2.59 7.02 -2.39 -0.02 2.57 16 32 H 0.05 2.10 7.29 -2.38 -0.02 2.08 16 33 H 0.04 1.85 4.30 -2.39 -0.01 1.84 16 34 H 0.04 1.92 8.12 -2.39 -0.02 1.90 16 35 H 0.05 2.04 8.14 -2.38 -0.02 2.02 16 36 H 0.03 1.33 2.25 -2.39 -0.01 1.33 16 37 H 0.06 2.51 6.92 -2.39 -0.02 2.49 16 38 H 0.26 15.56 8.31 -92.70 -0.77 14.79 16 39 H 0.13 3.57 6.14 -2.91 -0.02 3.55 16 40 H 0.13 2.25 8.06 -2.91 -0.02 2.23 16 41 H 0.14 1.73 8.06 -2.91 -0.02 1.71 16 42 H 0.14 1.80 8.06 -2.91 -0.02 1.78 16 43 H 0.13 2.34 7.95 -2.91 -0.02 2.31 16 Total: -1.00 -65.49 340.67 5.25 -60.24 By element: Atomic # 1 Polarization: 16.78 SS G_CDS: 0.73 Total: 17.51 kcal Atomic # 6 Polarization: -50.80 SS G_CDS: 4.74 Total: -46.06 kcal Atomic # 7 Polarization: -58.60 SS G_CDS: 0.30 Total: -58.30 kcal Atomic # 8 Polarization: -9.86 SS G_CDS: -1.09 Total: -10.95 kcal Atomic # 14 Polarization: 45.24 SS G_CDS: 1.56 Total: 46.81 kcal Atomic # 16 Polarization: -8.25 SS G_CDS: -1.01 Total: -9.25 kcal Total: -65.49 5.25 -60.24 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000901665413.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.120 kcal (2) G-P(sol) polarization free energy of solvation -65.491 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.251 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.240 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds