Wall clock time and date at job start Tue Mar 31 2020 06:55:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42899 * 113.99629 * 2 1 4 4 C 1.53009 * 109.47113 * 180.02562 * 3 2 1 5 5 H 1.08996 * 109.46851 * 174.99773 * 4 3 2 6 6 S 1.81395 * 109.46693 * 294.99932 * 4 3 2 7 7 C 1.81398 * 103.00395 * 294.99595 * 6 4 3 8 8 C 1.52996 * 109.47371 * 180.02562 * 7 6 4 9 9 C 1.53001 * 109.47373 * 300.00161 * 8 7 6 10 10 C 1.53002 * 109.47047 * 60.00212 * 8 7 6 11 11 C 1.50701 * 109.47207 * 180.02562 * 8 7 6 12 12 H 1.08005 * 119.99842 * 359.97438 * 11 8 7 13 13 C 1.37871 * 119.99960 * 180.02562 * 11 8 7 14 14 N 1.31519 * 120.00513 * 359.97438 * 13 11 8 15 15 Si 1.86804 * 120.00120 * 179.97438 * 13 11 8 16 16 H 1.48500 * 109.47328 * 59.99477 * 15 13 11 17 17 H 1.48502 * 109.47329 * 180.02562 * 15 13 11 18 18 H 1.48506 * 109.46978 * 299.99889 * 15 13 11 19 19 C 1.50696 * 109.46706 * 54.99910 * 4 3 2 20 20 C 1.38236 * 120.00249 * 299.72533 * 19 4 3 21 21 C 1.38237 * 120.00132 * 179.79273 * 20 19 4 22 22 C 1.38239 * 119.99678 * 0.44062 * 21 20 19 23 23 C 1.38240 * 120.00132 * 359.81429 * 22 21 20 24 24 C 1.38233 * 119.99717 * 359.97438 * 23 22 21 25 25 H 1.09002 * 109.47382 * 59.99956 * 1 2 3 26 26 H 1.09001 * 109.46938 * 299.99942 * 1 2 3 27 27 H 1.09004 * 109.46926 * 180.02562 * 1 2 3 28 28 H 1.09007 * 109.47484 * 299.99646 * 3 2 1 29 29 H 1.09004 * 109.47459 * 59.99983 * 3 2 1 30 30 H 1.09001 * 109.47473 * 300.00613 * 7 6 4 31 31 H 1.09003 * 109.46699 * 60.00421 * 7 6 4 32 32 H 1.09006 * 109.46972 * 60.00053 * 9 8 7 33 33 H 1.08998 * 109.47554 * 179.97438 * 9 8 7 34 34 H 1.08995 * 109.47031 * 299.99978 * 9 8 7 35 35 H 1.09001 * 109.46693 * 60.00108 * 10 8 7 36 36 H 1.09000 * 109.47053 * 180.02562 * 10 8 7 37 37 H 1.08996 * 109.47114 * 299.99942 * 10 8 7 38 38 H 0.96996 * 120.00563 * 179.97438 * 14 13 11 39 39 H 1.08000 * 119.99914 * 0.02562 * 20 19 4 40 40 H 1.08000 * 120.00245 * 180.27702 * 21 20 19 41 41 H 1.07996 * 119.99923 * 179.83555 * 22 21 20 42 42 H 1.08002 * 119.99801 * 179.97438 * 23 22 21 43 43 H 1.08006 * 119.99639 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1848 -0.0006 5 1 3.9784 2.1767 -0.0903 6 16 4.0817 0.4163 1.5490 7 6 3.6093 1.6412 2.8008 8 6 4.0096 1.1338 4.1875 9 6 3.2948 -0.1886 4.4727 10 6 5.5233 0.9155 4.2334 11 6 3.6165 2.1511 5.2275 12 1 3.1302 3.0682 4.9291 13 6 3.8787 1.9117 6.5597 14 7 4.4713 0.7953 6.9231 15 14 3.3921 3.1731 7.8488 16 1 1.9229 3.3847 7.8046 17 1 3.7817 2.6811 9.1947 18 1 4.0856 4.4568 7.5717 19 6 3.9714 0.3329 -1.1648 20 6 3.5374 -0.9758 -1.2645 21 6 3.9338 -1.7558 -2.3347 22 6 4.7715 -1.2300 -3.3004 23 6 5.2097 0.0771 -3.1980 24 6 4.8098 0.8585 -2.1301 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.6886 1.8464 -0.8900 29 1 1.6885 1.8464 0.8900 30 1 4.1188 2.5832 2.5979 31 1 2.5310 1.7969 2.7678 32 1 3.5788 -0.9247 3.7206 33 1 3.5803 -0.5504 5.4605 34 1 2.2165 -0.0331 4.4401 35 1 6.0325 1.8577 4.0302 36 1 5.8084 0.5536 5.2212 37 1 5.8072 0.1795 3.4813 38 1 4.6561 0.6270 7.8603 39 1 2.8857 -1.3876 -0.5082 40 1 3.5912 -2.7769 -2.4149 41 1 5.0834 -1.8402 -4.1351 42 1 5.8645 0.4878 -3.9523 43 1 5.1525 1.8796 -2.0499 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000901665414.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:55:44 Heat of formation + Delta-G solvation = -29.564528 kcal Electronic energy + Delta-G solvation = -21690.926579 eV Core-core repulsion = 18634.211335 eV Total energy + Delta-G solvation = -3056.715244 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 294.139 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.33290 -37.61645 -35.88026 -33.29938 -31.48938 -30.76251 -29.09816 -26.47422 -25.89368 -25.54738 -25.07304 -23.49169 -22.43671 -20.93693 -18.91966 -16.96256 -16.63548 -15.99050 -15.74316 -15.49142 -15.12110 -14.89933 -14.67782 -14.15078 -13.60045 -13.25403 -13.19877 -12.97384 -12.85055 -12.47697 -12.30580 -12.04064 -11.70851 -11.39050 -11.25437 -11.12579 -10.93456 -10.75871 -10.69873 -10.59518 -10.21998 -10.06184 -9.63682 -9.45135 -9.37228 -9.35111 -8.77653 -8.53730 -8.45801 -8.33776 -6.85094 -5.95730 -4.07424 1.31795 1.55410 2.38674 3.29914 3.32676 3.35328 3.39311 3.78853 4.01276 4.42102 4.71390 4.87358 5.06607 5.08326 5.27061 5.29077 5.29687 5.37445 5.44201 5.51814 5.55407 5.65904 5.71892 5.79352 6.05554 6.06934 6.18862 6.24624 6.54444 6.60703 6.67577 6.79054 6.90104 7.05064 7.12158 7.22146 7.22852 7.25256 7.46623 7.70754 7.74679 8.12677 8.23680 8.45734 8.91564 9.57440 11.04806 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.024084 B = 0.003959 C = 0.003721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1162.298345 B = 7070.451085 C = 7524.004372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.368 6.368 3 C 0.072 3.928 4 C -0.035 4.035 5 H 0.098 0.902 6 S -0.226 6.226 7 C -0.061 4.061 8 C 0.083 3.917 9 C -0.129 4.129 10 C -0.131 4.131 11 C -0.507 4.507 12 H 0.052 0.948 13 C 0.068 3.932 14 N -0.882 5.882 15 Si 0.891 3.109 16 H -0.278 1.278 17 H -0.287 1.287 18 H -0.278 1.278 19 C -0.057 4.057 20 C -0.077 4.077 21 C -0.129 4.129 22 C -0.123 4.123 23 C -0.129 4.129 24 C -0.111 4.111 25 H 0.035 0.965 26 H 0.041 0.959 27 H 0.085 0.915 28 H 0.050 0.950 29 H 0.056 0.944 30 H 0.062 0.938 31 H 0.062 0.938 32 H 0.022 0.978 33 H 0.081 0.919 34 H 0.022 0.978 35 H 0.023 0.977 36 H 0.082 0.918 37 H 0.021 0.979 38 H 0.260 0.740 39 H 0.143 0.857 40 H 0.119 0.881 41 H 0.116 0.884 42 H 0.118 0.882 43 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.515 -1.536 -17.761 18.171 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.286 6.286 3 C -0.007 4.007 4 C -0.163 4.163 5 H 0.116 0.884 6 S 0.005 5.995 7 C -0.209 4.209 8 C 0.082 3.918 9 C -0.187 4.187 10 C -0.189 4.189 11 C -0.547 4.547 12 H 0.071 0.929 13 C -0.134 4.134 14 N -0.520 5.520 15 Si 0.719 3.281 16 H -0.204 1.204 17 H -0.213 1.213 18 H -0.204 1.204 19 C -0.059 4.059 20 C -0.096 4.096 21 C -0.147 4.147 22 C -0.142 4.142 23 C -0.147 4.147 24 C -0.131 4.131 25 H 0.053 0.947 26 H 0.060 0.940 27 H 0.103 0.897 28 H 0.068 0.932 29 H 0.074 0.926 30 H 0.081 0.919 31 H 0.081 0.919 32 H 0.041 0.959 33 H 0.100 0.900 34 H 0.041 0.959 35 H 0.042 0.958 36 H 0.101 0.899 37 H 0.040 0.960 38 H 0.070 0.930 39 H 0.161 0.839 40 H 0.137 0.863 41 H 0.134 0.866 42 H 0.136 0.864 43 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -2.832 -2.767 -17.418 17.862 hybrid contribution -1.095 2.297 0.551 2.604 sum -3.927 -0.469 -16.867 17.325 Atomic orbital electron populations 1.22711 0.81716 1.02609 0.99604 1.87980 1.18850 1.26556 1.95253 1.22560 0.92289 0.85631 1.00201 1.22220 0.96115 1.01303 0.96673 0.88404 1.87126 1.80012 1.33837 0.98506 1.23890 1.01972 0.97488 0.97569 1.17934 0.93130 0.94061 0.86689 1.21820 0.97747 0.97031 1.02109 1.21844 0.97149 0.97978 1.01931 1.20998 1.39234 1.03509 0.90969 0.92925 1.24875 0.94925 0.95343 0.98252 1.69821 1.41714 1.23916 1.16598 0.86679 0.78881 0.81730 0.80780 1.20389 1.21254 1.20374 1.19190 0.97873 0.94604 0.94195 1.21377 0.97745 0.92938 0.97552 1.21173 0.98732 0.99822 0.94959 1.21112 0.98394 0.95589 0.99089 1.21001 1.00846 0.94517 0.98364 1.21014 0.97706 0.99859 0.94485 0.94682 0.94031 0.89697 0.93241 0.92572 0.91934 0.91887 0.95934 0.90018 0.95873 0.95812 0.89921 0.96017 0.92952 0.83919 0.86322 0.86589 0.86420 0.86382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 11.01 101.05 1.11 1.45 16 2 O -0.37 -5.24 7.32 -35.23 -0.26 -5.50 16 3 C 0.07 0.99 5.46 37.16 0.20 1.19 16 4 C -0.04 -0.52 2.91 -27.88 -0.08 -0.61 16 5 H 0.10 1.35 7.88 -51.93 -0.41 0.94 16 6 S -0.23 -4.25 17.59 -107.50 -1.89 -6.14 16 7 C -0.06 -1.28 4.57 37.16 0.17 -1.11 16 8 C 0.08 2.03 0.52 -155.66 -0.08 1.95 16 9 C -0.13 -3.17 8.01 37.16 0.30 -2.87 16 10 C -0.13 -3.22 8.01 37.16 0.30 -2.92 16 11 C -0.51 -13.50 8.01 -34.44 -0.28 -13.78 16 12 H 0.05 1.38 7.74 -52.48 -0.41 0.98 16 13 C 0.07 1.82 5.15 -17.82 -0.09 1.73 16 14 N -0.88 -24.31 9.35 55.43 0.52 -23.79 16 15 Si 0.89 20.86 29.54 -169.99 -5.02 15.84 16 16 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 17 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 18 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 19 C -0.06 -0.82 4.78 -104.63 -0.50 -1.32 16 20 C -0.08 -1.10 8.21 -39.58 -0.32 -1.43 16 21 C -0.13 -1.59 10.05 -39.58 -0.40 -1.99 16 22 C -0.12 -1.38 10.05 -39.58 -0.40 -1.78 16 23 C -0.13 -1.47 10.05 -39.58 -0.40 -1.86 16 24 C -0.11 -1.40 9.67 -39.58 -0.38 -1.79 16 25 H 0.03 0.33 8.14 -51.93 -0.42 -0.09 16 26 H 0.04 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.08 0.83 8.14 -51.93 -0.42 0.40 16 28 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.06 0.81 6.73 -51.93 -0.35 0.46 16 30 H 0.06 1.28 8.14 -51.92 -0.42 0.85 16 31 H 0.06 1.29 7.02 -51.92 -0.36 0.93 16 32 H 0.02 0.52 6.92 -51.93 -0.36 0.16 16 33 H 0.08 2.19 6.07 -51.93 -0.32 1.87 16 34 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.02 0.56 8.14 -51.93 -0.42 0.13 16 36 H 0.08 2.21 6.07 -51.93 -0.32 1.90 16 37 H 0.02 0.50 6.91 -51.93 -0.36 0.14 16 38 H 0.26 6.91 8.31 -40.82 -0.34 6.58 16 39 H 0.14 2.20 6.19 -52.49 -0.32 1.88 16 40 H 0.12 1.22 8.06 -52.49 -0.42 0.80 16 41 H 0.12 1.01 8.06 -52.49 -0.42 0.59 16 42 H 0.12 1.05 8.06 -52.49 -0.42 0.63 16 43 H 0.12 1.29 7.95 -52.48 -0.42 0.87 16 LS Contribution 350.51 15.07 5.28 5.28 Total: -1.00 -28.33 350.51 -9.20 -37.53 By element: Atomic # 1 Polarization: 8.89 SS G_CDS: -6.98 Total: 1.91 kcal Atomic # 6 Polarization: -24.28 SS G_CDS: -0.85 Total: -25.13 kcal Atomic # 7 Polarization: -24.31 SS G_CDS: 0.52 Total: -23.79 kcal Atomic # 8 Polarization: -5.24 SS G_CDS: -0.26 Total: -5.50 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.84 kcal Atomic # 16 Polarization: -4.25 SS G_CDS: -1.89 Total: -6.14 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -28.33 -9.20 -37.53 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000901665414.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.970 kcal (2) G-P(sol) polarization free energy of solvation -28.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.534 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.565 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds