Wall clock time and date at job start Tue Mar 31 2020 06:55:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42899 * 113.99629 * 2 1 4 4 C 1.53009 * 109.47113 * 180.02562 * 3 2 1 5 5 H 1.08996 * 109.46851 * 174.99773 * 4 3 2 6 6 S 1.81395 * 109.46693 * 294.99932 * 4 3 2 7 7 C 1.81398 * 103.00395 * 294.99595 * 6 4 3 8 8 C 1.52996 * 109.47371 * 180.02562 * 7 6 4 9 9 C 1.53001 * 109.47373 * 300.00161 * 8 7 6 10 10 C 1.53002 * 109.47047 * 60.00212 * 8 7 6 11 11 C 1.50701 * 109.47207 * 180.02562 * 8 7 6 12 12 H 1.08005 * 119.99842 * 359.97438 * 11 8 7 13 13 C 1.37871 * 119.99960 * 180.02562 * 11 8 7 14 14 N 1.31519 * 120.00513 * 359.97438 * 13 11 8 15 15 Si 1.86804 * 120.00120 * 179.97438 * 13 11 8 16 16 H 1.48500 * 109.47328 * 59.99477 * 15 13 11 17 17 H 1.48502 * 109.47329 * 180.02562 * 15 13 11 18 18 H 1.48506 * 109.46978 * 299.99889 * 15 13 11 19 19 C 1.50696 * 109.46706 * 54.99910 * 4 3 2 20 20 C 1.38236 * 120.00249 * 299.72533 * 19 4 3 21 21 C 1.38237 * 120.00132 * 179.79273 * 20 19 4 22 22 C 1.38239 * 119.99678 * 0.44062 * 21 20 19 23 23 C 1.38240 * 120.00132 * 359.81429 * 22 21 20 24 24 C 1.38233 * 119.99717 * 359.97438 * 23 22 21 25 25 H 1.09002 * 109.47382 * 59.99956 * 1 2 3 26 26 H 1.09001 * 109.46938 * 299.99942 * 1 2 3 27 27 H 1.09004 * 109.46926 * 180.02562 * 1 2 3 28 28 H 1.09007 * 109.47484 * 299.99646 * 3 2 1 29 29 H 1.09004 * 109.47459 * 59.99983 * 3 2 1 30 30 H 1.09001 * 109.47473 * 300.00613 * 7 6 4 31 31 H 1.09003 * 109.46699 * 60.00421 * 7 6 4 32 32 H 1.09006 * 109.46972 * 60.00053 * 9 8 7 33 33 H 1.08998 * 109.47554 * 179.97438 * 9 8 7 34 34 H 1.08995 * 109.47031 * 299.99978 * 9 8 7 35 35 H 1.09001 * 109.46693 * 60.00108 * 10 8 7 36 36 H 1.09000 * 109.47053 * 180.02562 * 10 8 7 37 37 H 1.08996 * 109.47114 * 299.99942 * 10 8 7 38 38 H 0.96996 * 120.00563 * 179.97438 * 14 13 11 39 39 H 1.08000 * 119.99914 * 0.02562 * 20 19 4 40 40 H 1.08000 * 120.00245 * 180.27702 * 21 20 19 41 41 H 1.07996 * 119.99923 * 179.83555 * 22 21 20 42 42 H 1.08002 * 119.99801 * 179.97438 * 23 22 21 43 43 H 1.08006 * 119.99639 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1848 -0.0006 5 1 3.9784 2.1767 -0.0903 6 16 4.0817 0.4163 1.5490 7 6 3.6093 1.6412 2.8008 8 6 4.0096 1.1338 4.1875 9 6 3.2948 -0.1886 4.4727 10 6 5.5233 0.9155 4.2334 11 6 3.6165 2.1511 5.2275 12 1 3.1302 3.0682 4.9291 13 6 3.8787 1.9117 6.5597 14 7 4.4713 0.7953 6.9231 15 14 3.3921 3.1731 7.8488 16 1 1.9229 3.3847 7.8046 17 1 3.7817 2.6811 9.1947 18 1 4.0856 4.4568 7.5717 19 6 3.9714 0.3329 -1.1648 20 6 3.5374 -0.9758 -1.2645 21 6 3.9338 -1.7558 -2.3347 22 6 4.7715 -1.2300 -3.3004 23 6 5.2097 0.0771 -3.1980 24 6 4.8098 0.8585 -2.1301 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.6886 1.8464 -0.8900 29 1 1.6885 1.8464 0.8900 30 1 4.1188 2.5832 2.5979 31 1 2.5310 1.7969 2.7678 32 1 3.5788 -0.9247 3.7206 33 1 3.5803 -0.5504 5.4605 34 1 2.2165 -0.0331 4.4401 35 1 6.0325 1.8577 4.0302 36 1 5.8084 0.5536 5.2212 37 1 5.8072 0.1795 3.4813 38 1 4.6561 0.6270 7.8603 39 1 2.8857 -1.3876 -0.5082 40 1 3.5912 -2.7769 -2.4149 41 1 5.0834 -1.8402 -4.1351 42 1 5.8645 0.4878 -3.9523 43 1 5.1525 1.8796 -2.0499 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000901665414.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:55:43 Heat of formation + Delta-G solvation = -41.862513 kcal Electronic energy + Delta-G solvation = -21691.459860 eV Core-core repulsion = 18634.211335 eV Total energy + Delta-G solvation = -3057.248525 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 294.139 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.30086 -38.61662 -37.81790 -34.32358 -33.50989 -31.68841 -30.11937 -27.90595 -27.55535 -27.19130 -27.08565 -24.52257 -23.36947 -21.98382 -20.81303 -18.13700 -17.82884 -17.70747 -16.84247 -16.62017 -16.50055 -16.27344 -15.87916 -15.52232 -15.03355 -14.87815 -14.44946 -14.11592 -14.03004 -13.87957 -13.59480 -13.29091 -13.14949 -13.02576 -12.89541 -12.63695 -12.52242 -12.30365 -12.20942 -12.00391 -11.87617 -11.61241 -11.41759 -11.23998 -11.08633 -10.55983 -10.38693 -10.29497 -9.70510 -9.50842 -8.35056 -7.99448 -6.17880 0.26864 0.61388 1.10432 1.44218 1.44669 1.51898 1.87605 2.46505 2.80347 3.05083 3.22925 3.67297 3.82423 4.10884 4.25309 4.28123 4.34162 4.39547 4.40701 4.42607 4.47716 4.57539 4.61456 4.73271 4.79611 4.84186 4.88899 4.95946 5.08492 5.15116 5.26041 5.27136 5.30875 5.47049 5.63985 5.66255 5.67213 5.73281 5.80712 6.10454 6.18930 6.21803 6.25578 6.42177 6.87363 7.49749 8.99198 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.024084 B = 0.003959 C = 0.003721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1162.298345 B = 7070.451085 C = 7524.004372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.387 6.387 3 C 0.074 3.926 4 C -0.021 4.021 5 H 0.110 0.890 6 S -0.256 6.256 7 C -0.051 4.051 8 C 0.074 3.926 9 C -0.114 4.114 10 C -0.118 4.118 11 C -0.526 4.526 12 H 0.051 0.949 13 C 0.024 3.976 14 N -0.904 5.904 15 Si 0.949 3.051 16 H -0.274 1.274 17 H -0.286 1.286 18 H -0.274 1.274 19 C -0.076 4.076 20 C -0.095 4.095 21 C -0.137 4.137 22 C -0.121 4.121 23 C -0.129 4.129 24 C -0.118 4.118 25 H 0.053 0.947 26 H 0.037 0.963 27 H 0.095 0.905 28 H 0.073 0.927 29 H 0.046 0.954 30 H 0.063 0.937 31 H 0.061 0.939 32 H 0.029 0.971 33 H 0.056 0.944 34 H 0.018 0.982 35 H 0.021 0.979 36 H 0.056 0.944 37 H 0.029 0.971 38 H 0.259 0.741 39 H 0.125 0.875 40 H 0.134 0.866 41 H 0.145 0.855 42 H 0.146 0.854 43 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.578 -0.946 -20.000 20.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.306 6.306 3 C -0.005 4.005 4 C -0.149 4.149 5 H 0.128 0.872 6 S -0.024 6.024 7 C -0.199 4.199 8 C 0.073 3.927 9 C -0.172 4.172 10 C -0.176 4.176 11 C -0.565 4.565 12 H 0.069 0.931 13 C -0.176 4.176 14 N -0.542 5.542 15 Si 0.776 3.224 16 H -0.199 1.199 17 H -0.211 1.211 18 H -0.199 1.199 19 C -0.078 4.078 20 C -0.114 4.114 21 C -0.155 4.155 22 C -0.139 4.139 23 C -0.147 4.147 24 C -0.138 4.138 25 H 0.071 0.929 26 H 0.055 0.945 27 H 0.114 0.886 28 H 0.091 0.909 29 H 0.064 0.936 30 H 0.082 0.918 31 H 0.080 0.920 32 H 0.048 0.952 33 H 0.075 0.925 34 H 0.037 0.963 35 H 0.040 0.960 36 H 0.075 0.925 37 H 0.048 0.952 38 H 0.069 0.931 39 H 0.142 0.858 40 H 0.152 0.848 41 H 0.163 0.837 42 H 0.164 0.836 43 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -2.903 -2.172 -19.651 19.982 hybrid contribution -1.073 2.050 1.095 2.560 sum -3.976 -0.123 -18.556 18.977 Atomic orbital electron populations 1.22864 0.80318 1.03607 1.00248 1.87970 1.20452 1.26802 1.95384 1.22538 0.91519 0.85737 1.00711 1.22269 0.97004 1.01509 0.94099 0.87221 1.87105 1.80462 1.34108 1.00754 1.23534 1.01795 0.97902 0.96664 1.17938 0.92801 0.93490 0.88480 1.21634 0.97342 0.97505 1.00753 1.21671 0.97466 0.97874 1.00571 1.21319 1.39295 1.03961 0.91936 0.93110 1.25567 0.94977 0.96955 1.00070 1.69962 1.42327 1.25214 1.16736 0.85757 0.78632 0.79655 0.78404 1.19946 1.21124 1.19896 1.19204 0.99307 0.94717 0.94545 1.21335 0.98410 0.93490 0.98144 1.21420 0.98898 1.00506 0.94669 1.21490 0.97203 0.95923 0.99280 1.21383 1.00542 0.94453 0.98354 1.21266 0.97130 1.00880 0.94475 0.92860 0.94477 0.88633 0.90934 0.93614 0.91820 0.91999 0.95236 0.92549 0.96314 0.96000 0.92469 0.95193 0.93137 0.85757 0.84785 0.83741 0.83627 0.84883 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.55 11.01 113.37 1.25 1.80 16 2 O -0.39 -10.81 7.32 -148.98 -1.09 -11.90 16 3 C 0.07 1.95 5.46 71.99 0.39 2.34 16 4 C -0.02 -0.60 2.91 29.85 0.09 -0.51 16 5 H 0.11 2.85 7.88 -2.39 -0.02 2.83 16 6 S -0.26 -9.58 17.59 -56.49 -0.99 -10.58 16 7 C -0.05 -2.13 4.57 71.98 0.33 -1.80 16 8 C 0.07 3.67 0.52 -52.93 -0.03 3.64 16 9 C -0.11 -5.74 8.01 71.98 0.58 -5.16 16 10 C -0.12 -5.88 8.01 71.98 0.58 -5.30 16 11 C -0.53 -28.23 8.01 25.60 0.21 -28.03 16 12 H 0.05 2.68 7.74 -2.91 -0.02 2.65 16 13 C 0.02 1.29 5.15 84.65 0.44 1.72 16 14 N -0.90 -50.71 9.35 21.45 0.20 -50.51 16 15 Si 0.95 42.93 29.54 68.60 2.03 44.96 16 16 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 17 H -0.29 -12.77 7.11 99.48 0.71 -12.06 16 18 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 19 C -0.08 -2.07 4.78 -19.87 -0.09 -2.17 16 20 C -0.09 -2.62 8.21 22.27 0.18 -2.44 16 21 C -0.14 -3.12 10.05 22.27 0.22 -2.89 16 22 C -0.12 -2.32 10.05 22.27 0.22 -2.10 16 23 C -0.13 -2.50 10.05 22.27 0.22 -2.28 16 24 C -0.12 -2.69 9.67 22.27 0.22 -2.47 16 25 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 26 H 0.04 0.81 8.14 -2.39 -0.02 0.79 16 27 H 0.10 1.78 8.14 -2.38 -0.02 1.76 16 28 H 0.07 1.58 8.14 -2.38 -0.02 1.56 16 29 H 0.05 1.29 6.73 -2.38 -0.02 1.27 16 30 H 0.06 2.59 8.14 -2.39 -0.02 2.57 16 31 H 0.06 2.55 7.02 -2.39 -0.02 2.54 16 32 H 0.03 1.39 6.92 -2.38 -0.02 1.37 16 33 H 0.06 3.10 6.07 -2.39 -0.01 3.09 16 34 H 0.02 0.89 8.14 -2.39 -0.02 0.87 16 35 H 0.02 1.03 8.14 -2.39 -0.02 1.01 16 36 H 0.06 3.13 6.07 -2.39 -0.01 3.12 16 37 H 0.03 1.40 6.91 -2.39 -0.02 1.38 16 38 H 0.26 14.00 8.31 -92.71 -0.77 13.23 16 39 H 0.12 3.86 6.19 -2.91 -0.02 3.85 16 40 H 0.13 2.51 8.06 -2.91 -0.02 2.49 16 41 H 0.14 1.92 8.06 -2.91 -0.02 1.90 16 42 H 0.15 1.97 8.06 -2.91 -0.02 1.95 16 43 H 0.13 2.54 7.95 -2.91 -0.02 2.52 16 Total: -1.00 -60.81 350.51 5.91 -54.90 By element: Atomic # 1 Polarization: 17.81 SS G_CDS: 0.97 Total: 18.78 kcal Atomic # 6 Polarization: -50.45 SS G_CDS: 4.80 Total: -45.66 kcal Atomic # 7 Polarization: -50.71 SS G_CDS: 0.20 Total: -50.51 kcal Atomic # 8 Polarization: -10.81 SS G_CDS: -1.09 Total: -11.90 kcal Atomic # 14 Polarization: 42.93 SS G_CDS: 2.03 Total: 44.96 kcal Atomic # 16 Polarization: -9.58 SS G_CDS: -0.99 Total: -10.58 kcal Total: -60.81 5.91 -54.90 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000901665414.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.036 kcal (2) G-P(sol) polarization free energy of solvation -60.807 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.771 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.899 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.863 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds