Wall clock time and date at job start Tue Mar 31 2020 07:51:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09005 * 109.47320 * 2 1 4 4 C 1.52991 * 109.47363 * 120.00713 * 2 1 3 5 5 O 1.42903 * 109.47131 * 294.99829 * 4 2 1 6 6 C 1.42899 * 114.00342 * 180.02562 * 5 4 2 7 7 C 1.50701 * 109.47103 * 180.02562 * 6 5 4 8 8 C 1.38235 * 119.99808 * 89.99842 * 7 6 5 9 9 C 1.38243 * 119.99602 * 179.97438 * 8 7 6 10 10 C 1.38231 * 120.00070 * 0.07188 * 9 8 7 11 11 C 1.38234 * 119.99892 * 359.90902 * 10 9 8 12 12 C 1.38230 * 119.99865 * 269.97588 * 7 6 5 13 13 C 1.53004 * 109.47053 * 240.00545 * 2 1 3 14 14 S 1.81400 * 109.47179 * 64.99716 * 13 2 1 15 15 C 1.81403 * 103.00263 * 180.02562 * 14 13 2 16 16 C 1.52994 * 109.47336 * 180.02562 * 15 14 13 17 17 C 1.50697 * 109.46970 * 180.02562 * 16 15 14 18 18 H 1.07995 * 120.00442 * 359.97438 * 17 16 15 19 19 C 1.37882 * 119.99974 * 180.02562 * 17 16 15 20 20 N 1.31513 * 119.99956 * 0.02562 * 19 17 16 21 21 Si 1.86797 * 120.00145 * 179.97438 * 19 17 16 22 22 H 1.48498 * 109.47050 * 359.97438 * 21 19 17 23 23 H 1.48501 * 109.46863 * 119.99930 * 21 19 17 24 24 H 1.48498 * 109.47165 * 239.99899 * 21 19 17 25 25 H 1.08996 * 109.47226 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.47089 * 299.99689 * 1 2 3 27 27 H 1.08995 * 109.47041 * 59.99239 * 1 2 3 28 28 H 1.08999 * 109.47303 * 175.00037 * 4 2 1 29 29 H 1.08994 * 109.47466 * 54.99493 * 4 2 1 30 30 H 1.08993 * 109.47528 * 59.99500 * 6 5 4 31 31 H 1.09001 * 109.46686 * 299.99411 * 6 5 4 32 32 H 1.08000 * 120.00616 * 359.70324 * 8 7 6 33 33 H 1.08001 * 119.99556 * 179.97438 * 9 8 7 34 34 H 1.07997 * 119.99633 * 179.97438 * 10 9 8 35 35 H 1.07999 * 119.99751 * 180.02562 * 11 10 9 36 36 H 1.08001 * 120.00371 * 0.02562 * 12 7 6 37 37 H 1.09000 * 109.47444 * 185.00157 * 13 2 1 38 38 H 1.09005 * 109.46939 * 305.00347 * 13 2 1 39 39 H 1.09003 * 109.46870 * 300.00729 * 15 14 13 40 40 H 1.08998 * 109.46930 * 59.99880 * 15 14 13 41 41 H 1.08998 * 109.47151 * 299.99934 * 16 15 14 42 42 H 1.08998 * 109.47375 * 59.99949 * 16 15 14 43 43 H 0.96999 * 120.00458 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 1.2491 5 8 1.6621 0.0165 2.4130 6 6 2.0925 -0.5741 3.6409 7 6 1.6413 0.2825 4.7958 8 6 0.4119 0.0557 5.3856 9 6 -0.0018 0.8412 6.4453 10 6 0.8134 1.8544 6.9141 11 6 2.0429 2.0809 6.3244 12 6 2.4570 1.2948 5.2654 13 6 2.0400 -0.7212 -1.2493 14 16 1.5601 0.2158 -2.7266 15 6 2.2416 -0.7802 -4.0809 16 6 1.9170 -0.1124 -5.4186 17 6 2.4827 -0.9402 -6.5436 18 1 3.0204 -1.8512 -6.3263 19 6 2.3147 -0.5339 -7.8505 20 7 1.6612 0.5763 -8.1151 21 14 3.0165 -1.5596 -9.2450 22 1 3.7037 -2.7513 -8.6857 23 1 1.9155 -1.9972 -10.1403 24 1 3.9888 -0.7454 -10.0177 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 3.1264 -0.7996 1.2054 29 1 1.6055 -1.7198 1.2950 30 1 3.1798 -0.6490 3.6467 31 1 1.6592 -1.5698 3.7366 32 1 -0.2274 -0.7324 5.0158 33 1 -0.9625 0.6642 6.9059 34 1 0.4900 2.4683 7.7417 35 1 2.6800 2.8723 6.6909 36 1 3.4175 1.4721 4.8046 37 1 3.1263 -0.7994 -1.2057 38 1 1.6053 -1.7197 -1.2954 39 1 3.3229 -0.8574 -3.9666 40 1 1.8016 -1.7771 -4.0558 41 1 0.8358 -0.0350 -5.5331 42 1 2.3573 0.8844 -5.4435 43 1 1.5427 0.8619 -9.0345 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000902547461.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:51:36 Heat of formation + Delta-G solvation = -51.079609 kcal Electronic energy + Delta-G solvation = -19625.976793 eV Core-core repulsion = 16568.328584 eV Total energy + Delta-G solvation = -3057.648208 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 294.139 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.70856 -38.22106 -35.20940 -33.66782 -32.10226 -31.23127 -30.84923 -27.33267 -26.99041 -25.47490 -25.09919 -22.91547 -21.68190 -21.29874 -20.14467 -17.26259 -16.95495 -16.50436 -16.36946 -15.83308 -15.40455 -15.17216 -14.65031 -14.47618 -14.42253 -13.75326 -13.62305 -13.57841 -13.18994 -12.86924 -12.69971 -12.50475 -12.24287 -11.83275 -11.53604 -11.39264 -11.33324 -11.10303 -11.06760 -11.00054 -10.78366 -10.52881 -10.18100 -9.84201 -9.63016 -9.43379 -9.24580 -9.16682 -9.02514 -8.41837 -7.08806 -6.05451 -4.09925 0.92854 1.07665 2.17338 3.24734 3.27354 3.28358 3.36141 3.39774 3.79773 4.42147 4.47300 4.49312 4.67473 4.74424 4.78201 4.90081 4.92000 5.02174 5.05681 5.20688 5.27225 5.29774 5.30095 5.32776 5.57182 5.63102 5.70342 5.73062 5.81594 6.01263 6.08233 6.10859 6.17100 6.20322 6.23380 6.26228 6.42309 6.64566 6.74972 6.95454 7.58156 7.67017 7.91246 8.28536 8.95385 9.53907 11.05386 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.052441 B = 0.001878 C = 0.001868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 533.801206 B =14903.928013 C =14982.002058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.070 4.070 3 H 0.086 0.914 4 C 0.070 3.930 5 O -0.376 6.376 6 C 0.102 3.898 7 C -0.089 4.089 8 C -0.099 4.099 9 C -0.124 4.124 10 C -0.116 4.116 11 C -0.124 4.124 12 C -0.099 4.099 13 C -0.086 4.086 14 S -0.277 6.277 15 C -0.061 4.061 16 C 0.037 3.963 17 C -0.521 4.521 18 H 0.057 0.943 19 C 0.059 3.941 20 N -0.890 5.890 21 Si 0.897 3.103 22 H -0.273 1.273 23 H -0.283 1.283 24 H -0.283 1.283 25 H 0.051 0.949 26 H 0.059 0.941 27 H 0.070 0.930 28 H 0.050 0.950 29 H 0.051 0.949 30 H 0.057 0.943 31 H 0.057 0.943 32 H 0.123 0.877 33 H 0.123 0.877 34 H 0.122 0.878 35 H 0.123 0.877 36 H 0.123 0.877 37 H 0.075 0.925 38 H 0.076 0.924 39 H 0.066 0.934 40 H 0.066 0.934 41 H 0.026 0.974 42 H 0.026 0.974 43 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.244 -1.540 30.066 30.107 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.089 4.089 3 H 0.105 0.895 4 C -0.008 4.008 5 O -0.296 6.296 6 C 0.026 3.974 7 C -0.089 4.089 8 C -0.117 4.117 9 C -0.142 4.142 10 C -0.134 4.134 11 C -0.142 4.142 12 C -0.117 4.117 13 C -0.235 4.235 14 S -0.049 6.049 15 C -0.209 4.209 16 C -0.002 4.002 17 C -0.561 4.561 18 H 0.076 0.924 19 C -0.143 4.143 20 N -0.529 5.529 21 Si 0.724 3.276 22 H -0.197 1.197 23 H -0.209 1.209 24 H -0.209 1.209 25 H 0.070 0.930 26 H 0.078 0.922 27 H 0.089 0.911 28 H 0.068 0.932 29 H 0.069 0.931 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.141 0.859 33 H 0.141 0.859 34 H 0.140 0.860 35 H 0.141 0.859 36 H 0.141 0.859 37 H 0.094 0.906 38 H 0.095 0.905 39 H 0.085 0.915 40 H 0.085 0.915 41 H 0.045 0.955 42 H 0.045 0.955 43 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -0.974 -0.316 29.859 29.876 hybrid contribution 1.237 -1.910 -0.769 2.402 sum 0.263 -2.227 29.090 29.177 Atomic orbital electron populations 1.21818 0.93765 1.01929 1.02644 1.20813 0.97479 1.00369 0.90281 0.89520 1.22584 0.98496 0.94742 0.84966 1.87969 1.78638 1.50056 1.12930 1.21288 0.98427 0.94855 0.82876 1.19624 0.95284 0.97576 0.96390 1.21089 0.95205 0.99589 0.95792 1.21163 0.99873 0.96010 0.97176 1.21209 0.94537 0.97774 0.99903 1.21165 0.96704 0.99684 0.96647 1.21095 0.99839 0.94440 0.96294 1.23264 1.03130 1.01433 0.95660 1.86912 1.76812 1.40125 1.01076 1.23687 1.01278 0.99797 0.96099 1.18904 0.97980 0.96204 0.87080 1.21143 1.35755 1.08515 0.90674 0.92439 1.25019 0.95214 0.95175 0.98901 1.69982 1.41075 1.22191 1.19635 0.86467 0.78832 0.80224 0.82062 1.19729 1.20889 1.20898 0.93025 0.92161 0.91124 0.93197 0.93118 0.92482 0.92498 0.85912 0.85908 0.86032 0.85895 0.85890 0.90596 0.90521 0.91519 0.91479 0.95515 0.95523 0.92839 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.81 8.92 37.16 0.33 -1.48 16 2 C -0.07 -0.87 2.62 -90.62 -0.24 -1.10 16 3 H 0.09 1.17 8.14 -51.93 -0.42 0.75 16 4 C 0.07 0.72 5.32 37.15 0.20 0.92 16 5 O -0.38 -4.24 9.86 -35.23 -0.35 -4.58 16 6 C 0.10 0.89 6.06 36.01 0.22 1.11 16 7 C -0.09 -0.81 5.51 -104.63 -0.58 -1.39 16 8 C -0.10 -0.84 9.70 -39.58 -0.38 -1.22 16 9 C -0.12 -0.94 10.05 -39.58 -0.40 -1.34 16 10 C -0.12 -0.85 10.05 -39.59 -0.40 -1.25 16 11 C -0.12 -0.95 10.05 -39.58 -0.40 -1.35 16 12 C -0.10 -0.85 9.70 -39.59 -0.38 -1.23 16 13 C -0.09 -1.19 5.38 37.16 0.20 -0.99 16 14 S -0.28 -5.15 20.55 -107.50 -2.21 -7.35 16 15 C -0.06 -1.29 5.88 37.15 0.22 -1.07 16 16 C 0.04 0.97 4.98 -27.89 -0.14 0.83 16 17 C -0.52 -14.70 9.11 -34.44 -0.31 -15.01 16 18 H 0.06 1.56 7.74 -52.49 -0.41 1.15 16 19 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 20 N -0.89 -26.80 13.29 55.43 0.74 -26.07 16 21 Si 0.90 21.50 29.54 -169.99 -5.02 16.47 16 22 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 23 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 24 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 25 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 26 H 0.06 0.74 7.82 -51.93 -0.41 0.33 16 27 H 0.07 1.00 7.13 -51.93 -0.37 0.63 16 28 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.06 0.43 8.09 -51.93 -0.42 0.01 16 31 H 0.06 0.42 8.08 -51.93 -0.42 0.01 16 32 H 0.12 0.89 8.06 -52.49 -0.42 0.46 16 33 H 0.12 0.68 8.06 -52.49 -0.42 0.26 16 34 H 0.12 0.62 8.06 -52.49 -0.42 0.20 16 35 H 0.12 0.69 8.06 -52.49 -0.42 0.27 16 36 H 0.12 0.91 8.06 -52.49 -0.42 0.48 16 37 H 0.08 0.98 8.14 -51.92 -0.42 0.55 16 38 H 0.08 0.99 8.14 -51.92 -0.42 0.57 16 39 H 0.07 1.36 8.14 -51.92 -0.42 0.93 16 40 H 0.07 1.36 8.14 -51.92 -0.42 0.94 16 41 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 42 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 43 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 LS Contribution 372.22 15.07 5.61 5.61 Total: -1.00 -31.07 372.22 -10.89 -41.96 By element: Atomic # 1 Polarization: 4.43 SS G_CDS: -7.50 Total: -3.07 kcal Atomic # 6 Polarization: -20.81 SS G_CDS: -2.16 Total: -22.97 kcal Atomic # 7 Polarization: -26.80 SS G_CDS: 0.74 Total: -26.07 kcal Atomic # 8 Polarization: -4.24 SS G_CDS: -0.35 Total: -4.58 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.47 kcal Atomic # 16 Polarization: -5.15 SS G_CDS: -2.21 Total: -7.35 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -31.07 -10.89 -41.96 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000902547461.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.121 kcal (2) G-P(sol) polarization free energy of solvation -31.068 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.891 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.959 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds