Wall clock time and date at job start Tue Mar 31 2020 07:51:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09005 * 109.47320 * 2 1 4 4 C 1.52991 * 109.47363 * 120.00713 * 2 1 3 5 5 O 1.42903 * 109.47131 * 294.99829 * 4 2 1 6 6 C 1.42899 * 114.00342 * 180.02562 * 5 4 2 7 7 C 1.50701 * 109.47103 * 180.02562 * 6 5 4 8 8 C 1.38235 * 119.99808 * 89.99842 * 7 6 5 9 9 C 1.38243 * 119.99602 * 179.97438 * 8 7 6 10 10 C 1.38231 * 120.00070 * 0.07188 * 9 8 7 11 11 C 1.38234 * 119.99892 * 359.90902 * 10 9 8 12 12 C 1.38230 * 119.99865 * 269.97588 * 7 6 5 13 13 C 1.53004 * 109.47053 * 240.00545 * 2 1 3 14 14 S 1.81400 * 109.47179 * 64.99716 * 13 2 1 15 15 C 1.81403 * 103.00263 * 180.02562 * 14 13 2 16 16 C 1.52994 * 109.47336 * 180.02562 * 15 14 13 17 17 C 1.50697 * 109.46970 * 180.02562 * 16 15 14 18 18 H 1.07995 * 120.00442 * 359.97438 * 17 16 15 19 19 C 1.37882 * 119.99974 * 180.02562 * 17 16 15 20 20 N 1.31513 * 119.99956 * 0.02562 * 19 17 16 21 21 Si 1.86797 * 120.00145 * 179.97438 * 19 17 16 22 22 H 1.48498 * 109.47050 * 359.97438 * 21 19 17 23 23 H 1.48501 * 109.46863 * 119.99930 * 21 19 17 24 24 H 1.48498 * 109.47165 * 239.99899 * 21 19 17 25 25 H 1.08996 * 109.47226 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.47089 * 299.99689 * 1 2 3 27 27 H 1.08995 * 109.47041 * 59.99239 * 1 2 3 28 28 H 1.08999 * 109.47303 * 175.00037 * 4 2 1 29 29 H 1.08994 * 109.47466 * 54.99493 * 4 2 1 30 30 H 1.08993 * 109.47528 * 59.99500 * 6 5 4 31 31 H 1.09001 * 109.46686 * 299.99411 * 6 5 4 32 32 H 1.08000 * 120.00616 * 359.70324 * 8 7 6 33 33 H 1.08001 * 119.99556 * 179.97438 * 9 8 7 34 34 H 1.07997 * 119.99633 * 179.97438 * 10 9 8 35 35 H 1.07999 * 119.99751 * 180.02562 * 11 10 9 36 36 H 1.08001 * 120.00371 * 0.02562 * 12 7 6 37 37 H 1.09000 * 109.47444 * 185.00157 * 13 2 1 38 38 H 1.09005 * 109.46939 * 305.00347 * 13 2 1 39 39 H 1.09003 * 109.46870 * 300.00729 * 15 14 13 40 40 H 1.08998 * 109.46930 * 59.99880 * 15 14 13 41 41 H 1.08998 * 109.47151 * 299.99934 * 16 15 14 42 42 H 1.08998 * 109.47375 * 59.99949 * 16 15 14 43 43 H 0.96999 * 120.00458 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 1.2491 5 8 1.6621 0.0165 2.4130 6 6 2.0925 -0.5741 3.6409 7 6 1.6413 0.2825 4.7958 8 6 0.4119 0.0557 5.3856 9 6 -0.0018 0.8412 6.4453 10 6 0.8134 1.8544 6.9141 11 6 2.0429 2.0809 6.3244 12 6 2.4570 1.2948 5.2654 13 6 2.0400 -0.7212 -1.2493 14 16 1.5601 0.2158 -2.7266 15 6 2.2416 -0.7802 -4.0809 16 6 1.9170 -0.1124 -5.4186 17 6 2.4827 -0.9402 -6.5436 18 1 3.0204 -1.8512 -6.3263 19 6 2.3147 -0.5339 -7.8505 20 7 1.6612 0.5763 -8.1151 21 14 3.0165 -1.5596 -9.2450 22 1 3.7037 -2.7513 -8.6857 23 1 1.9155 -1.9972 -10.1403 24 1 3.9888 -0.7454 -10.0177 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 3.1264 -0.7996 1.2054 29 1 1.6055 -1.7198 1.2950 30 1 3.1798 -0.6490 3.6467 31 1 1.6592 -1.5698 3.7366 32 1 -0.2274 -0.7324 5.0158 33 1 -0.9625 0.6642 6.9059 34 1 0.4900 2.4683 7.7417 35 1 2.6800 2.8723 6.6909 36 1 3.4175 1.4721 4.8046 37 1 3.1263 -0.7994 -1.2057 38 1 1.6053 -1.7197 -1.2954 39 1 3.3229 -0.8574 -3.9666 40 1 1.8016 -1.7771 -4.0558 41 1 0.8358 -0.0350 -5.5331 42 1 2.3573 0.8844 -5.4435 43 1 1.5427 0.8619 -9.0345 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000902547461.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:51:35 Heat of formation + Delta-G solvation = -65.796413 kcal Electronic energy + Delta-G solvation = -19626.614961 eV Core-core repulsion = 16568.328584 eV Total energy + Delta-G solvation = -3058.286377 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 294.139 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.30942 -38.98885 -36.15114 -35.76430 -32.90251 -32.72639 -31.79112 -28.45601 -27.74911 -27.22687 -26.13795 -23.48168 -23.20957 -22.27461 -21.22327 -18.67514 -17.92782 -17.76366 -17.09216 -16.73230 -16.52793 -16.37795 -16.08749 -15.68181 -15.49485 -15.07299 -14.69112 -14.37190 -14.26463 -13.94463 -13.69263 -13.55684 -13.44030 -13.18560 -12.96274 -12.93985 -12.43001 -12.27219 -12.18772 -12.02235 -11.88723 -11.84351 -11.76398 -11.64277 -11.16436 -10.73175 -10.61752 -10.57225 -9.82537 -9.76165 -8.58960 -8.23393 -6.37083 0.33105 0.49687 0.78065 1.41060 1.41483 1.54990 1.80412 2.40293 2.58632 3.09857 3.11625 3.77990 3.83186 3.91971 3.92697 4.12847 4.17637 4.27230 4.29513 4.32433 4.38744 4.39794 4.44005 4.47232 4.56072 4.65132 4.72593 4.76595 4.85544 4.88566 5.05690 5.08034 5.15341 5.23001 5.38360 5.39150 5.50014 5.54777 5.61018 5.66695 5.73863 6.09370 6.10961 6.23381 6.77705 7.32512 8.88646 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.052441 B = 0.001878 C = 0.001868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 533.801206 B =14903.928013 C =14982.002058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.066 4.066 3 H 0.071 0.929 4 C 0.076 3.924 5 O -0.398 6.398 6 C 0.101 3.899 7 C -0.108 4.108 8 C -0.113 4.113 9 C -0.132 4.132 10 C -0.123 4.123 11 C -0.133 4.133 12 C -0.115 4.115 13 C -0.068 4.068 14 S -0.312 6.312 15 C -0.050 4.050 16 C 0.043 3.957 17 C -0.542 4.542 18 H 0.068 0.932 19 C 0.000 4.000 20 N -0.932 5.932 21 Si 0.973 3.027 22 H -0.258 1.258 23 H -0.278 1.278 24 H -0.278 1.278 25 H 0.062 0.938 26 H 0.060 0.940 27 H 0.048 0.952 28 H 0.063 0.937 29 H 0.067 0.933 30 H 0.068 0.932 31 H 0.070 0.930 32 H 0.131 0.869 33 H 0.141 0.859 34 H 0.143 0.857 35 H 0.140 0.860 36 H 0.129 0.871 37 H 0.091 0.909 38 H 0.092 0.908 39 H 0.075 0.925 40 H 0.076 0.924 41 H -0.004 1.004 42 H -0.005 1.005 43 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.577 -3.166 31.447 31.611 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.086 4.086 3 H 0.090 0.910 4 C -0.002 4.002 5 O -0.318 6.318 6 C 0.025 3.975 7 C -0.108 4.108 8 C -0.131 4.131 9 C -0.150 4.150 10 C -0.141 4.141 11 C -0.151 4.151 12 C -0.133 4.133 13 C -0.216 4.216 14 S -0.085 6.085 15 C -0.198 4.198 16 C 0.005 3.995 17 C -0.581 4.581 18 H 0.086 0.914 19 C -0.198 4.198 20 N -0.572 5.572 21 Si 0.797 3.203 22 H -0.182 1.182 23 H -0.203 1.203 24 H -0.203 1.203 25 H 0.081 0.919 26 H 0.079 0.921 27 H 0.067 0.933 28 H 0.082 0.918 29 H 0.085 0.915 30 H 0.086 0.914 31 H 0.088 0.912 32 H 0.149 0.851 33 H 0.159 0.841 34 H 0.161 0.839 35 H 0.158 0.842 36 H 0.147 0.853 37 H 0.110 0.890 38 H 0.111 0.889 39 H 0.094 0.906 40 H 0.095 0.905 41 H 0.014 0.986 42 H 0.014 0.986 43 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -0.149 -1.950 31.250 31.311 hybrid contribution 0.937 -1.338 -1.053 1.943 sum 0.788 -3.288 30.197 30.386 Atomic orbital electron populations 1.21760 0.94060 1.02326 1.01573 1.20742 0.97184 0.99777 0.90885 0.91040 1.22498 0.99300 0.94750 0.83691 1.87931 1.79107 1.50933 1.13814 1.21413 0.99177 0.95208 0.81733 1.19818 0.95849 0.98195 0.96907 1.21315 0.95316 1.00195 0.96291 1.21472 1.00744 0.95837 0.96969 1.21546 0.94346 0.97838 1.00335 1.21464 0.97239 0.99961 0.96411 1.21314 1.00299 0.94758 0.96904 1.23313 1.04223 1.01189 0.92848 1.87039 1.77029 1.41274 1.03116 1.23317 1.01962 0.99817 0.94692 1.18684 0.95556 0.95066 0.90222 1.21593 1.35854 1.09043 0.91651 0.91405 1.26049 0.95395 0.96372 1.02030 1.70125 1.42434 1.24124 1.20485 0.85277 0.78128 0.78709 0.78172 1.18220 1.20314 1.20348 0.91884 0.92084 0.93260 0.91831 0.91510 0.91404 0.91231 0.85140 0.84083 0.83927 0.84176 0.85303 0.88997 0.88905 0.90624 0.90537 0.98587 0.98636 0.92584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.37 8.92 71.98 0.64 -2.73 16 2 C -0.07 -1.54 2.62 -10.79 -0.03 -1.56 16 3 H 0.07 1.89 8.14 -2.38 -0.02 1.87 16 4 C 0.08 1.37 5.32 71.98 0.38 1.75 16 5 O -0.40 -8.30 9.86 -148.98 -1.47 -9.77 16 6 C 0.10 1.60 6.06 71.24 0.43 2.03 16 7 C -0.11 -1.87 5.51 -19.87 -0.11 -1.98 16 8 C -0.11 -1.81 9.70 22.27 0.22 -1.60 16 9 C -0.13 -1.83 10.05 22.27 0.22 -1.61 16 10 C -0.12 -1.61 10.05 22.27 0.22 -1.39 16 11 C -0.13 -1.88 10.05 22.27 0.22 -1.66 16 12 C -0.11 -1.88 9.70 22.27 0.22 -1.67 16 13 C -0.07 -1.72 5.38 71.98 0.39 -1.33 16 14 S -0.31 -11.59 20.55 -56.49 -1.16 -12.75 16 15 C -0.05 -2.11 5.88 71.98 0.42 -1.69 16 16 C 0.04 2.34 4.98 29.85 0.15 2.49 16 17 C -0.54 -30.86 9.11 25.60 0.23 -30.63 16 18 H 0.07 3.63 7.74 -2.91 -0.02 3.61 16 19 C 0.00 -0.01 5.46 84.66 0.46 0.46 16 20 N -0.93 -57.38 13.29 21.45 0.28 -57.09 16 21 Si 0.97 43.98 29.54 68.60 2.03 46.01 16 22 H -0.26 -10.99 7.11 99.48 0.71 -10.28 16 23 H -0.28 -12.23 7.11 99.48 0.71 -11.52 16 24 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 25 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 26 H 0.06 1.45 7.82 -2.39 -0.02 1.43 16 27 H 0.05 1.39 7.13 -2.39 -0.02 1.37 16 28 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 29 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 30 H 0.07 0.90 8.09 -2.39 -0.02 0.88 16 31 H 0.07 0.90 8.08 -2.39 -0.02 0.88 16 32 H 0.13 1.75 8.06 -2.91 -0.02 1.73 16 33 H 0.14 1.31 8.06 -2.91 -0.02 1.29 16 34 H 0.14 1.17 8.06 -2.91 -0.02 1.14 16 35 H 0.14 1.37 8.06 -2.91 -0.02 1.34 16 36 H 0.13 1.82 8.06 -2.91 -0.02 1.79 16 37 H 0.09 2.10 8.14 -2.39 -0.02 2.08 16 38 H 0.09 2.12 8.14 -2.39 -0.02 2.10 16 39 H 0.08 3.02 8.14 -2.39 -0.02 3.00 16 40 H 0.08 3.05 8.14 -2.39 -0.02 3.03 16 41 H 0.00 -0.25 8.14 -2.39 -0.02 -0.27 16 42 H 0.00 -0.28 8.14 -2.39 -0.02 -0.30 16 43 H 0.27 15.23 8.31 -92.71 -0.77 14.46 16 Total: -1.00 -68.04 372.22 4.70 -63.34 By element: Atomic # 1 Polarization: 10.44 SS G_CDS: 0.94 Total: 11.38 kcal Atomic # 6 Polarization: -45.19 SS G_CDS: 4.08 Total: -41.11 kcal Atomic # 7 Polarization: -57.38 SS G_CDS: 0.28 Total: -57.09 kcal Atomic # 8 Polarization: -8.30 SS G_CDS: -1.47 Total: -9.77 kcal Atomic # 14 Polarization: 43.98 SS G_CDS: 2.03 Total: 46.01 kcal Atomic # 16 Polarization: -11.59 SS G_CDS: -1.16 Total: -12.75 kcal Total: -68.04 4.70 -63.34 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000902547461.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.457 kcal (2) G-P(sol) polarization free energy of solvation -68.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.700 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.340 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds