Wall clock time and date at job start Tue Mar 31 2020 08:03:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46499 * 109.47200 * 2 1 4 4 C 1.46498 * 119.99832 * 270.00155 * 3 2 1 5 5 C 1.50702 * 109.46956 * 269.99668 * 4 3 2 6 6 H 1.07999 * 120.00077 * 0.02562 * 5 4 3 7 7 C 1.37882 * 120.00047 * 180.02562 * 5 4 3 8 8 N 1.31515 * 119.99630 * 0.02562 * 7 5 4 9 9 Si 1.86794 * 119.99917 * 179.97438 * 7 5 4 10 10 H 1.48505 * 109.47186 * 60.00480 * 9 7 5 11 11 H 1.48500 * 109.47075 * 179.97438 * 9 7 5 12 12 H 1.48496 * 109.47505 * 300.00075 * 9 7 5 13 13 C 1.34776 * 119.99802 * 90.00074 * 3 2 1 14 14 O 1.21282 * 119.99547 * 180.02562 * 13 3 2 15 15 C 1.50698 * 120.00407 * 359.97438 * 13 3 2 16 16 O 1.45197 * 109.47051 * 180.02562 * 15 13 3 17 17 C 1.34792 * 116.99643 * 180.02562 * 16 15 13 18 18 O 1.21542 * 119.99936 * 359.97438 * 17 16 15 19 19 C 1.47113 * 119.99739 * 179.97438 * 17 16 15 20 20 C 1.37845 * 127.02510 * 0.02562 * 19 17 16 21 21 N 1.34625 * 108.20360 * 179.73756 * 20 19 17 22 22 H 0.97001 * 124.80426 * 180.02562 * 21 20 19 23 23 C 1.36420 * 110.38475 * 359.97438 * 21 20 19 24 24 C 1.34437 * 109.08532 * 359.97438 * 23 21 20 25 25 C 1.50704 * 126.81179 * 180.02562 * 24 23 21 26 26 H 1.09000 * 109.47300 * 60.00386 * 1 2 3 27 27 H 1.08999 * 109.46962 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.46994 * 300.00128 * 1 2 3 29 29 H 1.09003 * 109.47430 * 239.99710 * 2 1 3 30 30 H 1.09003 * 109.47047 * 120.00062 * 2 1 3 31 31 H 1.08999 * 109.47354 * 29.99874 * 4 3 2 32 32 H 1.09005 * 109.46942 * 150.00306 * 4 3 2 33 33 H 0.97001 * 119.99463 * 180.02562 * 8 7 5 34 34 H 1.09000 * 109.47078 * 59.99792 * 15 13 3 35 35 H 1.09000 * 109.46611 * 300.00303 * 15 13 3 36 36 H 1.07998 * 125.89230 * 359.71623 * 20 19 17 37 37 H 1.08005 * 125.45747 * 179.97438 * 23 21 20 38 38 H 1.08994 * 109.47172 * 269.98354 * 25 24 23 39 39 H 1.08997 * 109.46743 * 29.98209 * 25 24 23 40 40 H 1.08996 * 109.46541 * 149.97525 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0718 -1.2687 5 6 3.6858 1.8350 -1.7037 6 1 4.3426 1.2302 -1.0961 7 6 4.1494 2.3904 -2.8775 8 7 3.3496 3.1273 -3.6171 9 14 5.9138 2.0975 -3.4163 10 1 6.1417 0.6409 -3.5942 11 1 6.1613 2.7974 -4.7024 12 1 6.8410 2.6208 -2.3810 13 6 2.2430 2.0165 1.1672 14 8 2.6468 3.1601 1.1672 15 6 1.9913 1.3063 2.4723 16 8 2.3054 2.1961 3.5759 17 6 2.1336 1.7104 4.8215 18 8 1.7319 0.5744 4.9807 19 6 2.4325 2.5553 5.9881 20 6 2.8916 3.8549 5.9759 21 7 3.0302 4.2639 7.2510 22 1 3.3392 5.1432 7.5200 23 6 2.6736 3.2670 8.1113 24 6 2.2951 2.1892 7.4025 25 6 1.8242 0.8672 7.9515 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8934 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 1.5817 1.6877 -2.0284 32 1 2.0956 3.1410 -1.1384 33 1 3.6757 3.5177 -4.4430 34 1 2.6211 0.4186 2.5303 35 1 0.9432 1.0126 2.5298 36 1 3.1037 4.4433 5.0955 37 1 2.6923 3.3331 9.1892 38 1 2.6792 0.2052 8.0882 39 1 1.3314 1.0269 8.9105 40 1 1.1212 0.4134 7.2530 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000920580577.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:03:52 Heat of formation + Delta-G solvation = -77.797409 kcal Electronic energy + Delta-G solvation = -23213.117261 eV Core-core repulsion = 19608.017267 eV Total energy + Delta-G solvation = -3605.099993 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.33518 -39.93470 -38.73784 -36.07607 -35.23270 -32.82209 -32.67166 -30.51104 -30.10940 -28.79466 -26.74629 -26.47596 -23.68235 -23.02364 -22.36354 -20.45494 -19.34785 -18.59820 -18.34968 -17.12653 -16.58682 -16.27104 -16.22461 -15.60261 -15.02731 -14.75340 -14.26619 -14.12196 -13.90587 -13.51669 -13.39126 -13.13710 -12.84323 -12.78449 -12.59761 -12.33195 -12.04308 -12.00932 -11.61847 -11.56073 -11.20363 -10.92712 -10.80559 -10.55167 -10.40892 -10.33682 -10.12905 -9.65604 -8.93576 -8.89315 -8.48792 -8.42990 -7.71414 -6.04264 -4.09046 1.45818 2.15530 2.62389 3.04632 3.26958 3.32799 3.34438 3.37075 3.41807 4.00225 4.45279 4.71064 4.86475 4.91786 4.96699 5.14645 5.24422 5.30337 5.32230 5.41632 5.49234 5.63913 5.65262 5.69689 5.78562 5.91024 6.04736 6.06375 6.23285 6.47008 6.49512 6.65481 6.67258 7.03809 7.17621 7.42288 7.50990 7.91643 8.02285 8.22605 8.34523 8.87685 9.03052 9.55875 11.03853 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.020267 B = 0.003374 C = 0.003076 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1381.246917 B = 8297.266967 C = 9100.660317 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.102 3.898 3 N -0.593 5.593 4 C 0.248 3.752 5 C -0.529 4.529 6 H 0.058 0.942 7 C 0.062 3.938 8 N -0.895 5.895 9 Si 0.899 3.101 10 H -0.277 1.277 11 H -0.286 1.286 12 H -0.276 1.276 13 C 0.508 3.492 14 O -0.521 6.521 15 C 0.053 3.947 16 O -0.331 6.331 17 C 0.537 3.463 18 O -0.519 6.519 19 C -0.224 4.224 20 C 0.085 3.915 21 N -0.547 5.547 22 H 0.420 0.580 23 C -0.031 4.031 24 C -0.104 4.104 25 C -0.085 4.085 26 H 0.062 0.938 27 H 0.062 0.938 28 H 0.050 0.950 29 H 0.087 0.913 30 H 0.065 0.935 31 H 0.035 0.965 32 H 0.045 0.955 33 H 0.264 0.736 34 H 0.094 0.906 35 H 0.093 0.907 36 H 0.187 0.813 37 H 0.171 0.829 38 H 0.065 0.935 39 H 0.060 0.940 40 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.080 -2.115 21.309 21.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.022 4.022 3 N -0.326 5.326 4 C 0.130 3.870 5 C -0.567 4.567 6 H 0.076 0.924 7 C -0.140 4.140 8 N -0.534 5.534 9 Si 0.726 3.274 10 H -0.202 1.202 11 H -0.212 1.212 12 H -0.202 1.202 13 C 0.292 3.708 14 O -0.397 6.397 15 C -0.025 4.025 16 O -0.247 6.247 17 C 0.383 3.617 18 O -0.409 6.409 19 C -0.232 4.232 20 C -0.053 4.053 21 N -0.141 5.141 22 H 0.257 0.743 23 C -0.158 4.158 24 C -0.109 4.109 25 C -0.142 4.142 26 H 0.082 0.918 27 H 0.081 0.919 28 H 0.069 0.931 29 H 0.105 0.895 30 H 0.083 0.917 31 H 0.053 0.947 32 H 0.063 0.937 33 H 0.074 0.926 34 H 0.112 0.888 35 H 0.111 0.889 36 H 0.204 0.796 37 H 0.188 0.812 38 H 0.084 0.916 39 H 0.079 0.921 40 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -3.953 -1.614 21.198 21.623 hybrid contribution 1.084 0.072 -0.389 1.153 sum -2.869 -1.542 20.809 21.062 Atomic orbital electron populations 1.22231 0.96559 1.01674 1.02400 1.21506 0.93746 0.83962 1.03025 1.48201 1.63879 1.13415 1.07144 1.19309 0.96387 0.93690 0.77637 1.21412 0.96909 1.32052 1.06369 0.92423 1.24929 0.97890 0.94873 0.96352 1.69925 1.35757 1.33321 1.14376 0.86548 0.84746 0.78274 0.77795 1.20225 1.21186 1.20160 1.19751 0.79549 0.87121 0.84344 1.90695 1.44634 1.17571 1.86818 1.22889 1.02606 0.92653 0.84317 1.86609 1.79180 1.44695 1.14167 1.20205 0.73995 0.85136 0.82323 1.90783 1.44063 1.19421 1.86669 1.19642 1.17798 0.94894 0.90883 1.22599 0.99550 0.95468 0.87644 1.41574 1.51866 1.14726 1.05959 0.74295 1.21526 1.09621 0.88756 0.95890 1.20512 1.03849 0.96508 0.90069 1.20225 1.01299 0.92448 1.00243 0.91848 0.91919 0.93080 0.89488 0.91673 0.94677 0.93745 0.92645 0.88805 0.88883 0.79580 0.81220 0.91624 0.92145 0.90345 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.33 10.24 37.16 0.38 -1.95 16 2 C 0.10 1.65 5.93 -4.04 -0.02 1.62 16 3 N -0.59 -12.65 2.46 -175.06 -0.43 -13.08 16 4 C 0.25 6.48 5.16 -5.19 -0.03 6.45 16 5 C -0.53 -15.00 9.39 -34.44 -0.32 -15.33 16 6 H 0.06 1.63 7.81 -52.49 -0.41 1.22 16 7 C 0.06 1.76 5.46 -17.82 -0.10 1.67 16 8 N -0.89 -26.54 13.29 55.43 0.74 -25.81 16 9 Si 0.90 21.89 29.54 -169.99 -5.02 16.87 16 10 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 11 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 12 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 13 C 0.51 10.98 7.75 -10.99 -0.09 10.89 16 14 O -0.52 -13.53 16.08 -14.11 -0.23 -13.76 16 15 C 0.05 0.91 4.51 36.00 0.16 1.07 16 16 O -0.33 -5.90 9.61 -47.43 -0.46 -6.35 16 17 C 0.54 8.77 7.95 34.33 0.27 9.04 16 18 O -0.52 -9.05 15.12 -19.30 -0.29 -9.34 16 19 C -0.22 -3.05 6.32 -103.01 -0.65 -3.70 16 20 C 0.09 0.91 11.79 -16.47 -0.19 0.72 16 21 N -0.55 -4.09 5.89 -12.61 -0.07 -4.16 16 22 H 0.42 1.57 8.96 -40.82 -0.37 1.21 16 23 C -0.03 -0.26 11.80 -16.85 -0.20 -0.46 16 24 C -0.10 -1.18 6.35 -102.53 -0.65 -1.83 16 25 C -0.08 -0.86 9.98 36.01 0.36 -0.50 16 26 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 27 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.05 0.68 7.22 -51.93 -0.37 0.30 16 29 H 0.09 1.44 8.07 -51.93 -0.42 1.02 16 30 H 0.06 0.90 6.44 -51.93 -0.33 0.57 16 31 H 0.04 0.92 8.07 -51.93 -0.42 0.50 16 32 H 0.04 1.31 7.42 -51.93 -0.39 0.92 16 33 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 34 H 0.09 1.48 7.40 -51.93 -0.38 1.09 16 35 H 0.09 1.41 7.18 -51.93 -0.37 1.04 16 36 H 0.19 1.80 8.06 -52.49 -0.42 1.38 16 37 H 0.17 0.82 8.06 -52.48 -0.42 0.40 16 38 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.08 0.95 6.86 -51.93 -0.36 0.59 16 LS Contribution 348.36 15.07 5.25 5.25 Total: -1.00 -36.20 348.36 -7.08 -43.28 By element: Atomic # 1 Polarization: 4.89 SS G_CDS: -5.49 Total: -0.61 kcal Atomic # 6 Polarization: 8.78 SS G_CDS: -1.08 Total: 7.70 kcal Atomic # 7 Polarization: -43.28 SS G_CDS: 0.23 Total: -43.05 kcal Atomic # 8 Polarization: -28.48 SS G_CDS: -0.97 Total: -29.45 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.87 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -36.20 -7.08 -43.28 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000920580577.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.513 kcal (2) G-P(sol) polarization free energy of solvation -36.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.713 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.285 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.797 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds