Wall clock time and date at job start Tue Mar 31 2020 08:03:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46499 * 109.47200 * 2 1 4 4 C 1.46498 * 119.99832 * 270.00155 * 3 2 1 5 5 C 1.50702 * 109.46956 * 269.99668 * 4 3 2 6 6 H 1.07999 * 120.00077 * 0.02562 * 5 4 3 7 7 C 1.37882 * 120.00047 * 180.02562 * 5 4 3 8 8 N 1.31515 * 119.99630 * 0.02562 * 7 5 4 9 9 Si 1.86794 * 119.99917 * 179.97438 * 7 5 4 10 10 H 1.48505 * 109.47186 * 60.00480 * 9 7 5 11 11 H 1.48500 * 109.47075 * 179.97438 * 9 7 5 12 12 H 1.48496 * 109.47505 * 300.00075 * 9 7 5 13 13 C 1.34776 * 119.99802 * 90.00074 * 3 2 1 14 14 O 1.21282 * 119.99547 * 180.02562 * 13 3 2 15 15 C 1.50698 * 120.00407 * 359.97438 * 13 3 2 16 16 O 1.45197 * 109.47051 * 180.02562 * 15 13 3 17 17 C 1.34792 * 116.99643 * 180.02562 * 16 15 13 18 18 O 1.21542 * 119.99936 * 359.97438 * 17 16 15 19 19 C 1.47113 * 119.99739 * 179.97438 * 17 16 15 20 20 C 1.37845 * 127.02510 * 0.02562 * 19 17 16 21 21 N 1.34625 * 108.20360 * 179.73756 * 20 19 17 22 22 H 0.97001 * 124.80426 * 180.02562 * 21 20 19 23 23 C 1.36420 * 110.38475 * 359.97438 * 21 20 19 24 24 C 1.34437 * 109.08532 * 359.97438 * 23 21 20 25 25 C 1.50704 * 126.81179 * 180.02562 * 24 23 21 26 26 H 1.09000 * 109.47300 * 60.00386 * 1 2 3 27 27 H 1.08999 * 109.46962 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.46994 * 300.00128 * 1 2 3 29 29 H 1.09003 * 109.47430 * 239.99710 * 2 1 3 30 30 H 1.09003 * 109.47047 * 120.00062 * 2 1 3 31 31 H 1.08999 * 109.47354 * 29.99874 * 4 3 2 32 32 H 1.09005 * 109.46942 * 150.00306 * 4 3 2 33 33 H 0.97001 * 119.99463 * 180.02562 * 8 7 5 34 34 H 1.09000 * 109.47078 * 59.99792 * 15 13 3 35 35 H 1.09000 * 109.46611 * 300.00303 * 15 13 3 36 36 H 1.07998 * 125.89230 * 359.71623 * 20 19 17 37 37 H 1.08005 * 125.45747 * 179.97438 * 23 21 20 38 38 H 1.08994 * 109.47172 * 269.98354 * 25 24 23 39 39 H 1.08997 * 109.46743 * 29.98209 * 25 24 23 40 40 H 1.08996 * 109.46541 * 149.97525 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0718 -1.2687 5 6 3.6858 1.8350 -1.7037 6 1 4.3426 1.2302 -1.0961 7 6 4.1494 2.3904 -2.8775 8 7 3.3496 3.1273 -3.6171 9 14 5.9138 2.0975 -3.4163 10 1 6.1417 0.6409 -3.5942 11 1 6.1613 2.7974 -4.7024 12 1 6.8410 2.6208 -2.3810 13 6 2.2430 2.0165 1.1672 14 8 2.6468 3.1601 1.1672 15 6 1.9913 1.3063 2.4723 16 8 2.3054 2.1961 3.5759 17 6 2.1336 1.7104 4.8215 18 8 1.7319 0.5744 4.9807 19 6 2.4325 2.5553 5.9881 20 6 2.8916 3.8549 5.9759 21 7 3.0302 4.2639 7.2510 22 1 3.3392 5.1432 7.5200 23 6 2.6736 3.2670 8.1113 24 6 2.2951 2.1892 7.4025 25 6 1.8242 0.8672 7.9515 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8934 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 1.5817 1.6877 -2.0284 32 1 2.0956 3.1410 -1.1384 33 1 3.6757 3.5177 -4.4430 34 1 2.6211 0.4186 2.5303 35 1 0.9432 1.0126 2.5298 36 1 3.1037 4.4433 5.0955 37 1 2.6923 3.3331 9.1892 38 1 2.6792 0.2052 8.0882 39 1 1.3314 1.0269 8.9105 40 1 1.1212 0.4134 7.2530 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000920580577.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:03:52 Heat of formation + Delta-G solvation = -100.924937 kcal Electronic energy + Delta-G solvation = -23214.120146 eV Core-core repulsion = 19608.017267 eV Total energy + Delta-G solvation = -3606.102878 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.16799 -41.27740 -40.31513 -37.43295 -36.92465 -34.93347 -33.43774 -31.81919 -31.41148 -30.24865 -28.31314 -27.47051 -25.15422 -24.49069 -23.90160 -21.42407 -20.43657 -19.97435 -19.20934 -18.63914 -18.36975 -17.84885 -17.63135 -17.21094 -16.54629 -16.17836 -15.77683 -15.30482 -14.83142 -14.70249 -14.60020 -14.46523 -14.12781 -13.84080 -13.71542 -13.58529 -13.57091 -13.30524 -13.27287 -13.07880 -12.65738 -12.51403 -12.40419 -12.20292 -12.02389 -11.77222 -11.70276 -11.55183 -10.71292 -10.63931 -9.74899 -9.53863 -9.22510 -8.22779 -6.37421 0.43650 1.33345 1.38047 1.41763 1.43323 1.49228 1.62703 2.23178 2.29745 2.38900 2.55109 3.07168 3.45763 3.81343 3.94944 4.00307 4.04751 4.16753 4.27168 4.38678 4.38954 4.59461 4.67954 4.86254 4.89903 4.94573 4.94831 5.03250 5.15023 5.19498 5.22595 5.36144 5.39396 5.54820 5.77827 5.80421 5.87873 6.04745 6.57538 6.61850 6.71573 6.83500 7.21578 7.37001 8.84528 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.020267 B = 0.003374 C = 0.003076 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1381.246917 B = 8297.266967 C = 9100.660317 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.094 3.906 3 N -0.595 5.595 4 C 0.264 3.736 5 C -0.547 4.547 6 H 0.054 0.946 7 C 0.009 3.991 8 N -0.927 5.927 9 Si 0.968 3.032 10 H -0.260 1.260 11 H -0.278 1.278 12 H -0.278 1.278 13 C 0.501 3.499 14 O -0.576 6.576 15 C 0.065 3.935 16 O -0.349 6.349 17 C 0.534 3.466 18 O -0.539 6.539 19 C -0.268 4.268 20 C 0.089 3.911 21 N -0.527 5.527 22 H 0.441 0.559 23 C -0.005 4.005 24 C -0.136 4.136 25 C -0.081 4.081 26 H 0.045 0.955 27 H 0.097 0.903 28 H 0.055 0.945 29 H 0.082 0.918 30 H 0.096 0.904 31 H 0.030 0.970 32 H 0.000 1.000 33 H 0.268 0.732 34 H 0.113 0.887 35 H 0.118 0.882 36 H 0.191 0.809 37 H 0.213 0.787 38 H 0.064 0.936 39 H 0.087 0.913 40 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.428 -2.875 23.533 23.955 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.028 4.028 3 N -0.327 5.327 4 C 0.143 3.857 5 C -0.586 4.586 6 H 0.072 0.928 7 C -0.190 4.190 8 N -0.567 5.567 9 Si 0.792 3.208 10 H -0.185 1.185 11 H -0.203 1.203 12 H -0.203 1.203 13 C 0.288 3.712 14 O -0.456 6.456 15 C -0.012 4.012 16 O -0.265 6.265 17 C 0.382 3.618 18 O -0.430 6.430 19 C -0.276 4.276 20 C -0.051 4.051 21 N -0.122 5.122 22 H 0.282 0.718 23 C -0.132 4.132 24 C -0.141 4.141 25 C -0.138 4.138 26 H 0.064 0.936 27 H 0.116 0.884 28 H 0.074 0.926 29 H 0.101 0.899 30 H 0.114 0.886 31 H 0.047 0.953 32 H 0.018 0.982 33 H 0.077 0.923 34 H 0.131 0.869 35 H 0.135 0.865 36 H 0.208 0.792 37 H 0.230 0.770 38 H 0.083 0.917 39 H 0.106 0.894 40 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -3.319 -2.402 23.450 23.805 hybrid contribution 0.849 0.358 -1.008 1.366 sum -2.470 -2.043 22.442 22.670 Atomic orbital electron populations 1.22172 0.94329 1.03784 1.01809 1.21859 0.95572 0.81037 1.04339 1.48201 1.63624 1.15235 1.05684 1.18783 0.95561 0.91660 0.79699 1.21694 0.97858 1.32304 1.06735 0.92766 1.25845 1.02418 0.94376 0.96338 1.70043 1.37832 1.33992 1.14807 0.85467 0.78956 0.79038 0.77355 1.18478 1.20263 1.20336 1.20506 0.78271 0.86637 0.85752 1.90656 1.47138 1.20061 1.87757 1.22740 1.04380 0.92069 0.82012 1.86612 1.79677 1.45302 1.14921 1.20725 0.73497 0.85417 0.82170 1.90752 1.45358 1.20256 1.86684 1.19854 1.20609 0.96177 0.90970 1.22619 0.98739 0.94637 0.89087 1.41617 1.50185 1.15599 1.04762 0.71832 1.22106 1.06384 0.87263 0.97448 1.20798 1.05875 0.98114 0.89342 1.20185 1.00817 0.92020 1.00803 0.93581 0.88385 0.92555 0.89924 0.88585 0.95254 0.98187 0.92324 0.86925 0.86460 0.79250 0.77029 0.91719 0.89386 0.92995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.21 10.24 71.98 0.74 -3.47 16 2 C 0.09 2.95 5.93 86.38 0.51 3.46 16 3 N -0.60 -25.93 2.46 -826.15 -2.03 -27.96 16 4 C 0.26 14.37 5.16 85.63 0.44 14.81 16 5 C -0.55 -31.85 9.39 25.60 0.24 -31.61 16 6 H 0.05 3.11 7.81 -2.91 -0.02 3.09 16 7 C 0.01 0.55 5.46 84.66 0.46 1.01 16 8 N -0.93 -56.23 13.29 21.45 0.28 -55.95 16 9 Si 0.97 45.10 29.54 68.60 2.03 47.13 16 10 H -0.26 -11.39 7.11 99.48 0.71 -10.68 16 11 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 12 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 13 C 0.50 22.24 7.75 87.66 0.68 22.92 16 14 O -0.58 -31.38 16.08 15.76 0.25 -31.13 16 15 C 0.06 2.21 4.51 71.24 0.32 2.54 16 16 O -0.35 -12.63 9.61 -50.64 -0.49 -13.12 16 17 C 0.53 17.60 7.95 70.15 0.56 18.16 16 18 O -0.54 -18.88 15.12 19.70 0.30 -18.59 16 19 C -0.27 -7.19 6.32 -18.82 -0.12 -7.31 16 20 C 0.09 1.81 11.79 84.17 0.99 2.80 16 21 N -0.53 -6.33 5.89 -193.81 -1.14 -7.47 16 22 H 0.44 1.74 8.96 -92.71 -0.83 0.91 16 23 C 0.00 -0.06 11.80 83.11 0.98 0.92 16 24 C -0.14 -2.88 6.35 -18.51 -0.12 -3.00 16 25 C -0.08 -1.55 9.98 71.24 0.71 -0.84 16 26 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 27 H 0.10 1.87 8.14 -2.39 -0.02 1.85 16 28 H 0.06 1.40 7.22 -2.39 -0.02 1.38 16 29 H 0.08 2.68 8.07 -2.39 -0.02 2.66 16 30 H 0.10 2.44 6.44 -2.39 -0.02 2.42 16 31 H 0.03 1.61 8.07 -2.39 -0.02 1.59 16 32 H 0.00 0.00 7.42 -2.38 -0.02 -0.02 16 33 H 0.27 15.23 8.31 -92.71 -0.77 14.46 16 34 H 0.11 3.41 7.40 -2.39 -0.02 3.39 16 35 H 0.12 3.42 7.18 -2.39 -0.02 3.40 16 36 H 0.19 3.63 8.06 -2.91 -0.02 3.60 16 37 H 0.21 0.90 8.06 -2.91 -0.02 0.87 16 38 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 39 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 40 H 0.05 1.26 6.86 -2.39 -0.02 1.24 16 Total: -1.00 -82.73 348.36 5.84 -76.90 By element: Atomic # 1 Polarization: 9.55 SS G_CDS: 0.23 Total: 9.78 kcal Atomic # 6 Polarization: 14.01 SS G_CDS: 6.40 Total: 20.40 kcal Atomic # 7 Polarization: -88.50 SS G_CDS: -2.89 Total: -91.38 kcal Atomic # 8 Polarization: -62.90 SS G_CDS: 0.06 Total: -62.83 kcal Atomic # 14 Polarization: 45.10 SS G_CDS: 2.03 Total: 47.13 kcal Total: -82.73 5.84 -76.90 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000920580577.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.027 kcal (2) G-P(sol) polarization free energy of solvation -82.734 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.761 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.836 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.898 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.925 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds