Wall clock time and date at job start Tue Mar 31 2020 07:37:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.52992 * 109.47482 * 239.99783 * 2 1 3 5 5 C 1.50707 * 109.46966 * 64.99950 * 4 2 1 6 6 C 1.38244 * 119.97159 * 269.72741 * 5 4 2 7 7 C 1.38200 * 120.01985 * 179.72790 * 6 5 4 8 8 C 1.38463 * 119.97426 * 0.56749 * 7 6 5 9 9 F 1.35100 * 120.02361 * 179.68377 * 8 7 6 10 10 C 1.38454 * 119.95185 * 359.70612 * 8 7 6 11 11 C 1.38204 * 119.96986 * 0.02562 * 10 8 7 12 12 C 1.50708 * 109.47141 * 119.99670 * 2 1 3 13 13 O 1.20826 * 119.99590 * 120.00152 * 12 2 1 14 14 O 1.34220 * 119.99853 * 300.00271 * 12 2 1 15 15 C 1.45204 * 116.99725 * 179.97438 * 14 12 2 16 16 C 1.53004 * 109.47115 * 179.97438 * 15 14 12 17 17 C 1.53000 * 109.47307 * 179.97438 * 16 15 14 18 18 C 1.50693 * 109.47206 * 180.02562 * 17 16 15 19 19 H 1.08001 * 120.00187 * 359.97438 * 18 17 16 20 20 C 1.37875 * 120.00070 * 180.02562 * 18 17 16 21 21 N 1.31514 * 119.99926 * 359.97438 * 20 18 17 22 22 Si 1.86796 * 120.00225 * 179.97438 * 20 18 17 23 23 H 1.48505 * 109.47360 * 59.99973 * 22 20 18 24 24 H 1.48502 * 109.47286 * 179.97438 * 22 20 18 25 25 H 1.48496 * 109.47291 * 299.99909 * 22 20 18 26 26 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 28 28 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 29 29 H 1.08996 * 109.47729 * 184.99759 * 4 2 1 30 30 H 1.09001 * 109.47563 * 305.00337 * 4 2 1 31 31 H 1.07997 * 119.99161 * 359.97438 * 6 5 4 32 32 H 1.07999 * 120.01111 * 180.25970 * 7 6 5 33 33 H 1.07995 * 120.01746 * 180.02562 * 10 8 7 34 34 H 1.07997 * 119.98366 * 179.97438 * 11 10 8 35 35 H 1.09002 * 109.47052 * 299.99428 * 15 14 12 36 36 H 1.08994 * 109.47473 * 60.00112 * 15 14 12 37 37 H 1.09002 * 109.47256 * 300.00025 * 16 15 14 38 38 H 1.09002 * 109.47024 * 59.99789 * 16 15 14 39 39 H 1.09002 * 109.47150 * 300.00294 * 17 16 15 40 40 H 1.09002 * 109.47085 * 60.00030 * 17 16 15 41 41 H 0.97007 * 119.99920 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2491 5 6 1.6414 0.0571 -2.4765 6 6 0.4379 -0.2094 -3.1026 7 6 0.0688 0.5075 -4.2249 8 6 0.9101 1.4849 -4.7291 9 9 0.5531 2.1820 -5.8300 10 6 2.1176 1.7470 -4.1046 11 6 2.4822 1.0325 -2.9791 12 6 2.0323 -0.7104 1.2306 13 8 2.7270 -1.6927 1.1197 14 8 1.7080 -0.2518 2.4496 15 6 2.2268 -0.9863 3.5897 16 6 1.7558 -0.3189 4.8834 17 6 2.3018 -1.0932 6.0848 18 6 1.8374 -0.4363 7.3590 19 1 1.2153 0.4455 7.3163 20 6 2.2074 -0.9604 8.5794 21 7 2.9653 -2.0340 8.6314 22 14 1.6323 -0.1458 10.1589 23 1 0.1480 -0.1456 10.2039 24 1 2.1622 -0.8974 11.3249 25 1 2.1291 1.2529 10.2038 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 0.5139 0.8900 29 1 3.1263 -0.7994 -1.2055 30 1 1.6054 -1.7198 -1.2951 31 1 -0.2157 -0.9753 -2.7122 32 1 -0.8733 0.3021 -4.7114 33 1 2.7744 2.5093 -4.4967 34 1 3.4242 1.2365 -2.4920 35 1 1.8625 -2.0131 3.5566 36 1 3.3162 -0.9860 3.5570 37 1 2.1203 0.7078 4.9163 38 1 0.6662 -0.3188 4.9164 39 1 1.9369 -2.1198 6.0518 40 1 3.3913 -1.0937 6.0520 41 1 3.2260 -2.4025 9.4900 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000921105667.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:37:14 Heat of formation + Delta-G solvation = -140.285128 kcal Electronic energy + Delta-G solvation = -22081.323585 eV Core-core repulsion = 18453.593959 eV Total energy + Delta-G solvation = -3627.729626 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.142 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -49.23677 -40.56924 -39.53744 -36.70441 -35.17134 -33.99485 -31.76594 -31.57511 -30.91391 -27.18761 -26.94321 -24.55907 -23.42745 -22.96515 -21.67823 -20.42920 -19.89953 -18.04340 -17.58529 -16.80217 -16.68198 -16.31374 -16.03388 -15.90427 -15.60045 -14.80909 -14.49360 -14.35575 -14.05914 -13.88947 -13.78510 -13.45265 -12.98888 -12.50746 -12.41399 -12.21177 -12.08379 -11.89843 -11.76722 -11.54524 -11.38898 -11.24236 -10.96339 -10.68581 -10.64433 -10.39243 -10.28566 -9.73712 -9.52401 -9.49112 -9.19144 -8.92679 -8.39760 -6.04634 -4.07834 0.71262 0.82184 2.31128 2.81216 3.20297 3.31520 3.35920 3.38456 3.88415 4.29276 4.34122 4.43193 4.49798 4.52316 4.62039 4.85553 4.86493 4.93202 5.13816 5.31157 5.35651 5.45370 5.52092 5.54052 5.56433 5.61131 5.65357 5.72332 5.79850 5.85952 5.93307 6.00390 6.15900 6.48123 6.50221 6.52210 6.83236 6.96945 7.58472 7.69606 7.90557 7.93637 8.34569 8.98160 9.56409 11.06704 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.043696 B = 0.002048 C = 0.002017 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 640.637534 B =13666.765069 C =13877.266581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.078 4.078 3 H 0.109 0.891 4 C -0.067 4.067 5 C -0.088 4.088 6 C -0.084 4.084 7 C -0.152 4.152 8 C 0.092 3.908 9 F -0.142 7.142 10 C -0.151 4.151 11 C -0.086 4.086 12 C 0.460 3.540 13 O -0.513 6.513 14 O -0.356 6.356 15 C 0.068 3.932 16 C -0.109 4.109 17 C 0.024 3.976 18 C -0.522 4.522 19 H 0.057 0.943 20 C 0.056 3.944 21 N -0.895 5.895 22 Si 0.896 3.104 23 H -0.276 1.276 24 H -0.287 1.287 25 H -0.276 1.276 26 H 0.062 0.938 27 H 0.072 0.928 28 H 0.073 0.927 29 H 0.086 0.914 30 H 0.085 0.915 31 H 0.135 0.865 32 H 0.135 0.865 33 H 0.135 0.865 34 H 0.134 0.866 35 H 0.066 0.934 36 H 0.066 0.934 37 H 0.060 0.940 38 H 0.060 0.940 39 H 0.019 0.981 40 H 0.019 0.981 41 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.359 5.785 -26.956 27.912 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.098 4.098 3 H 0.127 0.873 4 C -0.105 4.105 5 C -0.088 4.088 6 C -0.102 4.102 7 C -0.171 4.171 8 C 0.073 3.927 9 F -0.121 7.121 10 C -0.170 4.170 11 C -0.104 4.104 12 C 0.303 3.697 13 O -0.401 6.401 14 O -0.272 6.272 15 C -0.005 4.005 16 C -0.146 4.146 17 C -0.013 4.013 18 C -0.560 4.560 19 H 0.075 0.925 20 C -0.145 4.145 21 N -0.533 5.533 22 Si 0.724 3.276 23 H -0.202 1.202 24 H -0.213 1.213 25 H -0.202 1.202 26 H 0.081 0.919 27 H 0.091 0.909 28 H 0.092 0.908 29 H 0.105 0.895 30 H 0.104 0.896 31 H 0.153 0.847 32 H 0.153 0.847 33 H 0.153 0.847 34 H 0.152 0.848 35 H 0.085 0.915 36 H 0.085 0.915 37 H 0.078 0.922 38 H 0.078 0.922 39 H 0.037 0.963 40 H 0.037 0.963 41 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -4.074 5.382 -26.849 27.684 hybrid contribution -0.187 0.398 0.753 0.872 sum -4.261 5.780 -26.096 27.066 Atomic orbital electron populations 1.21869 0.91927 1.03096 1.03700 1.20980 0.98554 1.00915 0.89306 0.87312 1.20502 1.02686 0.98318 0.88969 1.19894 0.94706 0.97143 0.97049 1.20999 0.95984 0.98977 0.94248 1.21163 1.00581 0.97000 0.98371 1.17758 0.95227 0.93997 0.85734 1.91502 1.91984 1.77659 1.50930 1.21160 0.96087 1.02253 0.97515 1.20989 0.99782 0.94590 0.95001 1.23545 0.77619 0.82982 0.85565 1.90659 1.35812 1.26037 1.87604 1.86494 1.69535 1.56092 1.15084 1.23508 0.98837 0.95548 0.82633 1.21763 1.01138 1.00312 0.91433 1.19047 0.96526 0.95383 0.90349 1.21130 1.31840 1.12388 0.90688 0.92483 1.25035 0.95110 0.95026 0.99333 1.69957 1.36103 1.21708 1.25573 0.86597 0.79056 0.79447 0.82545 1.20181 1.21263 1.20178 0.91937 0.90942 0.90754 0.89498 0.89650 0.84737 0.84706 0.84704 0.84773 0.91540 0.91548 0.92160 0.92157 0.96250 0.96254 0.92830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.24 8.71 37.16 0.32 -0.91 16 2 C -0.08 -0.75 2.82 -91.77 -0.26 -1.01 16 3 H 0.11 0.91 8.14 -51.93 -0.42 0.49 16 4 C -0.07 -0.57 4.19 -27.88 -0.12 -0.69 16 5 C -0.09 -0.65 4.71 -104.61 -0.49 -1.14 16 6 C -0.08 -0.57 7.98 -39.59 -0.32 -0.89 16 7 C -0.15 -1.09 10.03 -39.51 -0.40 -1.49 16 8 C 0.09 0.76 7.30 -39.42 -0.29 0.47 16 9 F -0.14 -1.32 17.27 2.25 0.04 -1.28 16 10 C -0.15 -1.11 10.03 -39.51 -0.40 -1.50 16 11 C -0.09 -0.60 9.70 -39.59 -0.38 -0.99 16 12 C 0.46 6.52 7.26 36.01 0.26 6.78 16 13 O -0.51 -8.63 15.67 -18.75 -0.29 -8.93 16 14 O -0.36 -5.72 10.12 -39.23 -0.40 -6.12 16 15 C 0.07 1.23 5.47 37.16 0.20 1.43 16 16 C -0.11 -2.23 5.53 -26.73 -0.15 -2.38 16 17 C 0.02 0.61 4.97 -27.89 -0.14 0.48 16 18 C -0.52 -14.64 9.11 -34.44 -0.31 -14.96 16 19 H 0.06 1.54 7.74 -52.49 -0.41 1.14 16 20 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 21 N -0.89 -26.73 13.29 55.43 0.74 -25.99 16 22 Si 0.90 21.47 29.54 -169.99 -5.02 16.45 16 23 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 24 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 25 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 26 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.07 0.49 6.28 -51.93 -0.33 0.17 16 28 H 0.07 0.67 8.11 -51.93 -0.42 0.25 16 29 H 0.09 0.78 7.90 -51.93 -0.41 0.36 16 30 H 0.08 0.73 8.08 -51.93 -0.42 0.31 16 31 H 0.13 0.71 8.05 -52.49 -0.42 0.28 16 32 H 0.14 0.75 8.06 -52.49 -0.42 0.32 16 33 H 0.14 0.78 8.06 -52.49 -0.42 0.35 16 34 H 0.13 0.75 8.06 -52.49 -0.42 0.32 16 35 H 0.07 1.22 8.13 -51.93 -0.42 0.80 16 36 H 0.07 1.22 8.13 -51.93 -0.42 0.79 16 37 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 38 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 39 H 0.02 0.52 8.14 -51.93 -0.42 0.09 16 40 H 0.02 0.52 8.14 -51.93 -0.42 0.09 16 41 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 LS Contribution 354.22 15.07 5.34 5.34 Total: -1.00 -31.55 354.22 -8.35 -39.90 By element: Atomic # 1 Polarization: 2.10 SS G_CDS: -6.19 Total: -4.09 kcal Atomic # 6 Polarization: -12.73 SS G_CDS: -2.56 Total: -15.29 kcal Atomic # 7 Polarization: -26.73 SS G_CDS: 0.74 Total: -25.99 kcal Atomic # 8 Polarization: -14.35 SS G_CDS: -0.69 Total: -15.04 kcal Atomic # 9 Polarization: -1.32 SS G_CDS: 0.04 Total: -1.28 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -31.55 -8.35 -39.90 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000921105667.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.384 kcal (2) G-P(sol) polarization free energy of solvation -31.555 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.938 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.347 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.901 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.285 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds