Wall clock time and date at job start Tue Mar 31 2020 07:37:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.52992 * 109.47482 * 239.99783 * 2 1 3 5 5 C 1.50707 * 109.46966 * 64.99950 * 4 2 1 6 6 C 1.38244 * 119.97159 * 269.72741 * 5 4 2 7 7 C 1.38200 * 120.01985 * 179.72790 * 6 5 4 8 8 C 1.38463 * 119.97426 * 0.56749 * 7 6 5 9 9 F 1.35100 * 120.02361 * 179.68377 * 8 7 6 10 10 C 1.38454 * 119.95185 * 359.70612 * 8 7 6 11 11 C 1.38204 * 119.96986 * 0.02562 * 10 8 7 12 12 C 1.50708 * 109.47141 * 119.99670 * 2 1 3 13 13 O 1.20826 * 119.99590 * 120.00152 * 12 2 1 14 14 O 1.34220 * 119.99853 * 300.00271 * 12 2 1 15 15 C 1.45204 * 116.99725 * 179.97438 * 14 12 2 16 16 C 1.53004 * 109.47115 * 179.97438 * 15 14 12 17 17 C 1.53000 * 109.47307 * 179.97438 * 16 15 14 18 18 C 1.50693 * 109.47206 * 180.02562 * 17 16 15 19 19 H 1.08001 * 120.00187 * 359.97438 * 18 17 16 20 20 C 1.37875 * 120.00070 * 180.02562 * 18 17 16 21 21 N 1.31514 * 119.99926 * 359.97438 * 20 18 17 22 22 Si 1.86796 * 120.00225 * 179.97438 * 20 18 17 23 23 H 1.48505 * 109.47360 * 59.99973 * 22 20 18 24 24 H 1.48502 * 109.47286 * 179.97438 * 22 20 18 25 25 H 1.48496 * 109.47291 * 299.99909 * 22 20 18 26 26 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 28 28 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 29 29 H 1.08996 * 109.47729 * 184.99759 * 4 2 1 30 30 H 1.09001 * 109.47563 * 305.00337 * 4 2 1 31 31 H 1.07997 * 119.99161 * 359.97438 * 6 5 4 32 32 H 1.07999 * 120.01111 * 180.25970 * 7 6 5 33 33 H 1.07995 * 120.01746 * 180.02562 * 10 8 7 34 34 H 1.07997 * 119.98366 * 179.97438 * 11 10 8 35 35 H 1.09002 * 109.47052 * 299.99428 * 15 14 12 36 36 H 1.08994 * 109.47473 * 60.00112 * 15 14 12 37 37 H 1.09002 * 109.47256 * 300.00025 * 16 15 14 38 38 H 1.09002 * 109.47024 * 59.99789 * 16 15 14 39 39 H 1.09002 * 109.47150 * 300.00294 * 17 16 15 40 40 H 1.09002 * 109.47085 * 60.00030 * 17 16 15 41 41 H 0.97007 * 119.99920 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2491 5 6 1.6414 0.0571 -2.4765 6 6 0.4379 -0.2094 -3.1026 7 6 0.0688 0.5075 -4.2249 8 6 0.9101 1.4849 -4.7291 9 9 0.5531 2.1820 -5.8300 10 6 2.1176 1.7470 -4.1046 11 6 2.4822 1.0325 -2.9791 12 6 2.0323 -0.7104 1.2306 13 8 2.7270 -1.6927 1.1197 14 8 1.7080 -0.2518 2.4496 15 6 2.2268 -0.9863 3.5897 16 6 1.7558 -0.3189 4.8834 17 6 2.3018 -1.0932 6.0848 18 6 1.8374 -0.4363 7.3590 19 1 1.2153 0.4455 7.3163 20 6 2.2074 -0.9604 8.5794 21 7 2.9653 -2.0340 8.6314 22 14 1.6323 -0.1458 10.1589 23 1 0.1480 -0.1456 10.2039 24 1 2.1622 -0.8974 11.3249 25 1 2.1291 1.2529 10.2038 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 0.5139 0.8900 29 1 3.1263 -0.7994 -1.2055 30 1 1.6054 -1.7198 -1.2951 31 1 -0.2157 -0.9753 -2.7122 32 1 -0.8733 0.3021 -4.7114 33 1 2.7744 2.5093 -4.4967 34 1 3.4242 1.2365 -2.4920 35 1 1.8625 -2.0131 3.5566 36 1 3.3162 -0.9860 3.5570 37 1 2.1203 0.7078 4.9163 38 1 0.6662 -0.3188 4.9164 39 1 1.9369 -2.1198 6.0518 40 1 3.3913 -1.0937 6.0520 41 1 3.2260 -2.4025 9.4900 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000921105667.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:37:13 Heat of formation + Delta-G solvation = -154.980409 kcal Electronic energy + Delta-G solvation = -22081.960820 eV Core-core repulsion = 18453.593959 eV Total energy + Delta-G solvation = -3628.366861 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.142 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -49.87222 -41.69266 -40.19848 -37.97355 -36.02016 -35.90365 -33.67120 -32.10023 -31.62049 -29.02361 -27.58587 -25.87355 -24.50327 -23.89476 -22.45822 -22.16050 -20.92671 -18.83151 -18.59890 -18.44022 -17.75423 -17.34635 -17.30674 -16.56559 -16.50050 -16.24600 -15.90300 -15.09993 -15.03687 -14.77864 -14.42662 -14.36953 -14.17686 -13.98218 -13.75174 -13.54971 -13.13294 -13.03041 -12.79212 -12.54126 -12.47009 -12.40370 -12.18695 -12.09358 -12.04309 -11.82747 -11.70132 -11.39594 -11.35011 -11.16629 -10.56617 -10.02145 -9.51828 -8.21517 -6.33142 0.13441 0.30703 1.16756 1.41772 1.45031 1.52784 1.67329 2.41651 2.62386 3.12179 3.32619 3.48737 3.74657 3.80986 3.94454 3.98381 4.01396 4.06805 4.08570 4.29108 4.36767 4.39215 4.42922 4.74268 4.79992 4.83460 4.86910 4.91390 5.02591 5.05823 5.08064 5.15994 5.20169 5.28417 5.31028 5.44410 5.55027 5.60059 5.63869 5.80165 5.95045 6.19248 6.70537 6.82771 7.36292 8.90352 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.043696 B = 0.002048 C = 0.002017 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 640.637534 B =13666.765069 C =13877.266581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.070 4.070 3 H 0.127 0.873 4 C -0.061 4.061 5 C -0.090 4.090 6 C -0.084 4.084 7 C -0.154 4.154 8 C 0.073 3.927 9 F -0.152 7.152 10 C -0.156 4.156 11 C -0.088 4.088 12 C 0.458 3.542 13 O -0.541 6.541 14 O -0.356 6.356 15 C 0.077 3.923 16 C -0.094 4.094 17 C 0.025 3.975 18 C -0.544 4.544 19 H 0.065 0.935 20 C -0.002 4.002 21 N -0.933 5.933 22 Si 0.969 3.031 23 H -0.266 1.266 24 H -0.284 1.284 25 H -0.266 1.266 26 H 0.063 0.937 27 H 0.092 0.908 28 H 0.067 0.933 29 H 0.080 0.920 30 H 0.083 0.917 31 H 0.151 0.849 32 H 0.149 0.851 33 H 0.147 0.853 34 H 0.148 0.852 35 H 0.061 0.939 36 H 0.061 0.939 37 H 0.066 0.934 38 H 0.067 0.933 39 H -0.004 1.004 40 H -0.004 1.004 41 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.444 7.067 -27.511 28.921 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.089 4.089 3 H 0.145 0.855 4 C -0.098 4.098 5 C -0.091 4.091 6 C -0.102 4.102 7 C -0.173 4.173 8 C 0.054 3.946 9 F -0.131 7.131 10 C -0.174 4.174 11 C -0.106 4.106 12 C 0.303 3.697 13 O -0.431 6.431 14 O -0.273 6.273 15 C 0.004 3.996 16 C -0.131 4.131 17 C -0.012 4.012 18 C -0.582 4.582 19 H 0.083 0.917 20 C -0.200 4.200 21 N -0.573 5.573 22 Si 0.793 3.207 23 H -0.190 1.190 24 H -0.210 1.210 25 H -0.190 1.190 26 H 0.082 0.918 27 H 0.110 0.890 28 H 0.086 0.914 29 H 0.099 0.901 30 H 0.102 0.898 31 H 0.169 0.831 32 H 0.167 0.833 33 H 0.165 0.835 34 H 0.166 0.834 35 H 0.080 0.920 36 H 0.080 0.920 37 H 0.085 0.915 38 H 0.085 0.915 39 H 0.015 0.985 40 H 0.014 0.986 41 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -5.170 6.679 -27.428 28.699 hybrid contribution 0.175 -0.029 0.845 0.863 sum -4.995 6.650 -26.583 27.854 Atomic orbital electron populations 1.21885 0.90621 1.03448 1.04360 1.21126 0.99450 1.01212 0.87072 0.85530 1.20418 1.02271 0.98290 0.88838 1.19831 0.95176 0.97283 0.96764 1.21186 0.95946 0.99069 0.93954 1.21357 1.01016 0.96534 0.98398 1.18046 0.96033 0.94652 0.85883 1.91475 1.92130 1.77986 1.51502 1.21336 0.96034 1.02546 0.97506 1.21170 1.00277 0.94290 0.94900 1.24538 0.76742 0.82706 0.85733 1.90651 1.37208 1.27526 1.87753 1.86488 1.69583 1.55814 1.15365 1.23106 0.98426 0.95155 0.82930 1.21451 1.01207 0.99822 0.90649 1.18935 0.95104 0.94815 0.92317 1.21594 1.31933 1.12782 0.91842 0.91652 1.26023 0.95103 0.95585 1.03308 1.70096 1.37364 1.23272 1.26591 0.85437 0.78957 0.78606 0.77670 1.19031 1.20982 1.19040 0.91804 0.88957 0.91386 0.90107 0.89842 0.83092 0.83313 0.83539 0.83446 0.92033 0.92048 0.91499 0.91462 0.98532 0.98553 0.92693 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.08 8.71 71.98 0.63 -1.46 16 2 C -0.07 -1.20 2.82 -11.54 -0.03 -1.23 16 3 H 0.13 1.78 8.14 -2.39 -0.02 1.76 16 4 C -0.06 -0.92 4.19 29.85 0.13 -0.79 16 5 C -0.09 -1.15 4.71 -19.86 -0.09 -1.24 16 6 C -0.08 -0.94 7.98 22.26 0.18 -0.77 16 7 C -0.15 -1.91 10.03 22.31 0.22 -1.69 16 8 C 0.07 1.10 7.30 22.38 0.16 1.27 16 9 F -0.15 -2.69 17.27 44.97 0.78 -1.92 16 10 C -0.16 -2.03 10.03 22.31 0.22 -1.81 16 11 C -0.09 -1.07 9.70 22.26 0.22 -0.86 16 12 C 0.46 12.52 7.26 71.24 0.52 13.03 16 13 O -0.54 -18.06 15.67 21.96 0.34 -17.71 16 14 O -0.36 -11.11 10.12 -51.32 -0.52 -11.63 16 15 C 0.08 2.82 5.47 71.98 0.39 3.21 16 16 C -0.09 -3.83 5.53 30.60 0.17 -3.66 16 17 C 0.03 1.33 4.97 29.85 0.15 1.48 16 18 C -0.54 -30.59 9.11 25.60 0.23 -30.35 16 19 H 0.07 3.48 7.74 -2.91 -0.02 3.46 16 20 C 0.00 -0.13 5.46 84.65 0.46 0.33 16 21 N -0.93 -56.62 13.29 21.45 0.28 -56.34 16 22 Si 0.97 43.74 29.54 68.60 2.03 45.77 16 23 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 24 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 25 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 26 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 27 H 0.09 0.97 6.28 -2.39 -0.01 0.96 16 28 H 0.07 1.08 8.11 -2.38 -0.02 1.07 16 29 H 0.08 1.34 7.90 -2.39 -0.02 1.32 16 30 H 0.08 1.30 8.08 -2.39 -0.02 1.28 16 31 H 0.15 1.16 8.05 -2.91 -0.02 1.14 16 32 H 0.15 1.34 8.06 -2.91 -0.02 1.32 16 33 H 0.15 1.47 8.06 -2.91 -0.02 1.44 16 34 H 0.15 1.33 8.06 -2.91 -0.02 1.31 16 35 H 0.06 2.29 8.13 -2.39 -0.02 2.27 16 36 H 0.06 2.28 8.13 -2.39 -0.02 2.26 16 37 H 0.07 2.64 8.14 -2.39 -0.02 2.62 16 38 H 0.07 2.64 8.14 -2.39 -0.02 2.63 16 39 H 0.00 -0.21 8.14 -2.39 -0.02 -0.23 16 40 H 0.00 -0.22 8.14 -2.39 -0.02 -0.24 16 41 H 0.26 15.08 8.31 -92.70 -0.77 14.31 16 Total: -1.00 -67.68 354.22 7.47 -60.21 By element: Atomic # 1 Polarization: 5.15 SS G_CDS: 1.01 Total: 6.15 kcal Atomic # 6 Polarization: -28.09 SS G_CDS: 3.55 Total: -24.54 kcal Atomic # 7 Polarization: -56.62 SS G_CDS: 0.28 Total: -56.34 kcal Atomic # 8 Polarization: -29.17 SS G_CDS: -0.18 Total: -29.34 kcal Atomic # 9 Polarization: -2.69 SS G_CDS: 0.78 Total: -1.92 kcal Atomic # 14 Polarization: 43.74 SS G_CDS: 2.03 Total: 45.77 kcal Total: -67.68 7.47 -60.21 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000921105667.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.770 kcal (2) G-P(sol) polarization free energy of solvation -67.682 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -162.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.210 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds