Wall clock time and date at job start Tue Mar 31 2020 07:34:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35369 * 116.99723 * 2 1 4 4 C 1.36097 * 125.57962 * 180.02562 * 3 2 1 5 5 C 1.39902 * 107.17546 * 179.72722 * 4 3 2 6 6 C 1.37826 * 106.68034 * 0.38085 * 5 4 3 7 7 C 1.46134 * 126.02975 * 179.88523 * 6 5 4 8 8 O 1.21769 * 120.00285 * 359.71080 * 7 6 5 9 9 N 1.34777 * 119.99488 * 179.71682 * 7 6 5 10 10 C 1.47022 * 125.64528 * 179.97438 * 9 7 6 11 11 C 1.54327 * 107.27336 * 178.90269 * 10 9 7 12 12 H 1.08993 * 110.72079 * 96.16743 * 11 10 9 13 13 C 1.52997 * 110.72042 * 219.44597 * 11 10 9 14 14 C 1.55165 * 102.94078 * 337.80587 * 11 10 9 15 15 H 1.09001 * 111.00003 * 277.43047 * 14 11 10 16 16 N 1.46496 * 111.00397 * 153.57581 * 14 11 10 17 17 C 1.36935 * 120.00087 * 155.00449 * 16 14 11 18 18 H 1.08005 * 119.99923 * 359.97438 * 17 16 14 19 19 C 1.38812 * 120.00226 * 180.02562 * 17 16 14 20 20 N 1.31620 * 120.00114 * 179.97438 * 19 17 16 21 21 Si 1.86796 * 119.99926 * 359.97438 * 19 17 16 22 22 H 1.48498 * 109.47021 * 90.00243 * 21 19 17 23 23 H 1.48498 * 109.47373 * 210.00308 * 21 19 17 24 24 H 1.48500 * 109.47403 * 330.00276 * 21 19 17 25 25 C 1.47425 * 125.65136 * 359.95236 * 9 7 6 26 26 O 1.34014 * 125.58019 * 359.97422 * 3 2 1 27 27 H 1.08993 * 109.47007 * 299.99558 * 1 2 3 28 28 H 1.08998 * 109.47074 * 60.00000 * 1 2 3 29 29 H 1.09002 * 109.46732 * 179.97438 * 1 2 3 30 30 H 1.08001 * 126.40795 * 0.02562 * 4 3 2 31 31 H 1.08006 * 126.66278 * 180.24223 * 5 4 3 32 32 H 1.08997 * 109.88723 * 59.48678 * 10 9 7 33 33 H 1.08998 * 109.88661 * 298.31659 * 10 9 7 34 34 H 1.08999 * 109.47239 * 58.54617 * 13 11 10 35 35 H 1.09007 * 109.46791 * 178.54602 * 13 11 10 36 36 H 1.08997 * 109.47298 * 298.53811 * 13 11 10 37 37 H 0.97002 * 120.00223 * 334.99627 * 16 14 11 38 38 H 0.97000 * 120.00028 * 179.97438 * 20 19 17 39 39 H 1.08997 * 110.36855 * 323.00479 * 25 9 7 40 40 H 1.08999 * 110.36490 * 85.21794 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0435 1.2062 0.0000 4 6 3.3893 1.4093 -0.0005 5 6 3.5983 2.7926 -0.0067 6 6 2.3520 3.3810 -0.0009 7 6 2.0793 4.8167 -0.0019 8 8 3.0016 5.6117 -0.0029 9 7 0.8068 5.2608 -0.0015 10 6 0.3915 6.6712 -0.0019 11 6 -1.1513 6.6946 -0.0295 12 1 -1.5534 6.8048 0.9776 13 6 -1.6595 7.8123 -0.9423 14 6 -1.5096 5.3028 -0.6143 15 1 -1.4492 5.3090 -1.7026 16 7 -2.8357 4.8705 -0.1664 17 6 -3.5547 3.9786 -0.9165 18 1 -3.1442 3.5940 -1.8385 19 6 -4.8115 3.5694 -0.4924 20 7 -5.5027 2.7124 -1.2136 21 14 -5.5218 4.2351 1.1019 22 1 -6.2927 5.4729 0.8215 23 1 -6.4201 3.2186 1.7061 24 1 -4.4172 4.5429 2.0455 25 6 -0.3992 4.4129 -0.0012 26 8 1.4263 2.3957 -0.0005 27 1 -0.3633 0.5137 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 4.1528 0.6455 -0.0013 31 1 4.5513 3.3008 -0.0123 32 1 0.7857 7.1735 -0.8852 33 1 0.7536 7.1645 0.9001 34 1 -1.2706 7.6638 -1.9497 35 1 -2.7491 7.7940 -0.9671 36 1 -1.3209 8.7755 -0.5604 37 1 -3.2045 5.2161 0.6615 38 1 -6.3808 2.4263 -0.9171 39 1 -0.2404 3.5271 -0.6161 40 1 -0.6603 4.1251 1.0172 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000939387788.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:34:49 Heat of formation + Delta-G solvation = -35.986654 kcal Electronic energy + Delta-G solvation = -24253.484656 eV Core-core repulsion = 20650.197713 eV Total energy + Delta-G solvation = -3603.286943 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.75281 -39.80529 -38.54886 -37.65991 -34.33432 -33.27806 -32.59291 -31.15531 -29.66978 -28.03496 -27.47758 -26.05766 -23.95678 -22.57077 -21.98709 -21.17750 -20.24045 -19.79886 -18.52802 -17.67776 -17.23653 -17.10706 -16.15784 -15.71397 -15.30637 -15.05092 -14.47394 -14.17619 -13.69953 -13.48712 -13.35547 -13.27421 -13.18908 -12.94059 -12.73594 -12.65373 -12.16227 -12.05018 -11.85655 -11.55452 -11.45496 -11.22402 -10.85380 -10.72143 -10.46399 -10.18212 -10.08218 -10.05242 -9.73278 -9.13202 -8.59258 -8.05584 -7.47700 -5.92875 -3.30977 1.07234 2.20970 2.32451 2.96201 3.25363 3.26021 3.27044 3.29212 3.35603 4.44322 4.52376 4.74950 4.92218 4.94846 5.03939 5.07996 5.17770 5.29188 5.35093 5.44949 5.55193 5.60115 5.64201 5.65603 5.72601 5.74849 5.80185 6.04586 6.06877 6.20986 6.25844 6.29520 6.30344 6.43089 6.60729 6.67160 7.08813 7.56177 7.81069 8.13496 8.25532 9.02022 9.74272 9.92623 11.24566 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.012840 B = 0.005837 C = 0.004226 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2180.207013 B = 4795.752574 C = 6624.311278 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.265 6.265 3 C 0.217 3.783 4 C -0.248 4.248 5 C -0.086 4.086 6 C -0.096 4.096 7 C 0.617 3.383 8 O -0.536 6.536 9 N -0.606 5.606 10 C 0.118 3.882 11 C -0.119 4.119 12 H 0.082 0.918 13 C -0.135 4.135 14 C 0.183 3.817 15 H 0.078 0.922 16 N -0.733 5.733 17 C -0.253 4.253 18 H 0.092 0.908 19 C 0.012 3.988 20 N -0.928 5.928 21 Si 0.882 3.118 22 H -0.282 1.282 23 H -0.290 1.290 24 H -0.277 1.277 25 C 0.074 3.926 26 O -0.177 6.177 27 H 0.067 0.933 28 H 0.071 0.929 29 H 0.111 0.889 30 H 0.161 0.839 31 H 0.165 0.835 32 H 0.071 0.929 33 H 0.066 0.934 34 H 0.056 0.944 35 H 0.066 0.934 36 H 0.051 0.949 37 H 0.364 0.636 38 H 0.261 0.739 39 H 0.079 0.921 40 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.397 0.692 3.236 13.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.179 6.179 3 C 0.119 3.881 4 C -0.268 4.268 5 C -0.107 4.107 6 C -0.146 4.146 7 C 0.407 3.593 8 O -0.416 6.416 9 N -0.338 5.338 10 C -0.005 4.005 11 C -0.139 4.139 12 H 0.101 0.899 13 C -0.192 4.192 14 C 0.071 3.929 15 H 0.096 0.904 16 N -0.374 5.374 17 C -0.383 4.383 18 H 0.110 0.890 19 C -0.185 4.185 20 N -0.575 5.575 21 Si 0.712 3.288 22 H -0.209 1.209 23 H -0.216 1.216 24 H -0.203 1.203 25 C -0.052 4.052 26 O -0.077 6.077 27 H 0.086 0.914 28 H 0.089 0.911 29 H 0.129 0.871 30 H 0.179 0.821 31 H 0.183 0.817 32 H 0.090 0.910 33 H 0.085 0.915 34 H 0.075 0.925 35 H 0.085 0.915 36 H 0.070 0.930 37 H 0.198 0.802 38 H 0.071 0.929 39 H 0.097 0.903 40 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 13.554 0.787 3.045 13.914 hybrid contribution -0.889 0.104 1.228 1.520 sum 12.664 0.891 4.273 13.396 Atomic orbital electron populations 1.23260 0.75577 1.05175 1.03644 1.86371 1.23844 1.18794 1.88910 1.20949 0.89648 0.78657 0.98838 1.20716 0.92045 0.96779 1.17276 1.21904 0.97556 0.92522 0.98713 1.21825 0.86934 0.87348 1.18501 1.16016 0.81947 0.84090 0.77259 1.90865 1.43705 1.54020 1.53030 1.48353 1.05319 1.08923 1.71231 1.22020 0.94717 0.81722 1.02012 1.22581 0.93007 0.97443 1.00831 0.89915 1.21668 1.02128 0.96576 0.98851 1.21360 0.84549 0.89313 0.97707 0.90359 1.42638 1.14945 1.53484 1.26334 1.19056 0.97807 1.17269 1.04126 0.89044 1.24661 0.96842 0.98852 0.98154 1.69694 1.13310 1.35477 1.38994 0.86602 0.79084 0.78668 0.84450 1.20850 1.21630 1.20291 1.23562 0.84269 0.95332 1.02010 1.84210 1.37093 1.14052 1.72309 0.91444 0.91053 0.87061 0.82115 0.81734 0.91028 0.91529 0.92457 0.91452 0.92990 0.80213 0.92862 0.90272 0.91383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.20 10.74 101.05 1.09 1.29 16 2 O -0.27 -3.42 10.55 -41.03 -0.43 -3.86 16 3 C 0.22 3.01 7.86 29.96 0.24 3.25 16 4 C -0.25 -3.07 10.89 -39.73 -0.43 -3.50 16 5 C -0.09 -1.14 10.66 -39.11 -0.42 -1.56 16 6 C -0.10 -1.49 6.96 -36.57 -0.25 -1.74 16 7 C 0.62 10.40 7.80 -13.09 -0.10 10.30 16 8 O -0.54 -9.93 17.20 5.13 0.09 -9.84 16 9 N -0.61 -9.74 3.33 -172.24 -0.57 -10.31 16 10 C 0.12 1.67 6.46 -3.06 -0.02 1.65 16 11 C -0.12 -1.71 3.20 -88.78 -0.28 -1.99 16 12 H 0.08 1.17 8.00 -51.93 -0.42 0.76 16 13 C -0.13 -1.73 9.13 37.16 0.34 -1.39 16 14 C 0.18 3.22 3.16 -65.77 -0.21 3.01 16 15 H 0.08 1.45 7.99 -51.93 -0.41 1.03 16 16 N -0.73 -15.66 5.05 -51.33 -0.26 -15.92 16 17 C -0.25 -6.53 10.44 -15.06 -0.16 -6.69 16 18 H 0.09 2.55 8.06 -52.48 -0.42 2.13 16 19 C 0.01 0.31 5.50 -17.43 -0.10 0.22 16 20 N -0.93 -27.39 13.97 55.49 0.78 -26.61 16 21 Si 0.88 20.66 27.73 -169.99 -4.71 15.95 16 22 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 23 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 24 H -0.28 -6.08 6.52 56.52 0.37 -5.71 16 25 C 0.07 1.25 5.86 -2.51 -0.01 1.23 16 26 O -0.18 -2.73 7.33 -19.26 -0.14 -2.87 16 27 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 28 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 29 H 0.11 0.98 8.14 -51.93 -0.42 0.56 16 30 H 0.16 1.55 8.06 -52.49 -0.42 1.13 16 31 H 0.17 1.86 8.06 -52.48 -0.42 1.43 16 32 H 0.07 0.97 7.82 -51.93 -0.41 0.57 16 33 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 34 H 0.06 0.72 8.13 -51.93 -0.42 0.30 16 35 H 0.07 0.95 8.14 -51.92 -0.42 0.53 16 36 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.36 7.69 5.63 -40.82 -0.23 7.46 16 38 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 39 H 0.08 1.40 6.21 -51.93 -0.32 1.08 16 40 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 LS Contribution 337.80 15.07 5.09 5.09 Total: -1.00 -30.44 337.80 -6.10 -36.54 By element: Atomic # 1 Polarization: 13.36 SS G_CDS: -5.61 Total: 7.75 kcal Atomic # 6 Polarization: 4.41 SS G_CDS: -0.33 Total: 4.08 kcal Atomic # 7 Polarization: -52.78 SS G_CDS: -0.06 Total: -52.84 kcal Atomic # 8 Polarization: -16.08 SS G_CDS: -0.49 Total: -16.57 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -4.71 Total: 15.95 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -30.44 -6.10 -36.54 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000939387788.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.553 kcal (2) G-P(sol) polarization free energy of solvation -30.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.887 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.540 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds