Wall clock time and date at job start Tue Mar 31 2020 07:34:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35369 * 116.99723 * 2 1 4 4 C 1.36097 * 125.57962 * 180.02562 * 3 2 1 5 5 C 1.39902 * 107.17546 * 179.72722 * 4 3 2 6 6 C 1.37826 * 106.68034 * 0.38085 * 5 4 3 7 7 C 1.46134 * 126.02975 * 179.88523 * 6 5 4 8 8 O 1.21769 * 120.00285 * 359.71080 * 7 6 5 9 9 N 1.34777 * 119.99488 * 179.71682 * 7 6 5 10 10 C 1.47022 * 125.64528 * 179.97438 * 9 7 6 11 11 C 1.54327 * 107.27336 * 178.90269 * 10 9 7 12 12 H 1.08993 * 110.72079 * 96.16743 * 11 10 9 13 13 C 1.52997 * 110.72042 * 219.44597 * 11 10 9 14 14 C 1.55165 * 102.94078 * 337.80587 * 11 10 9 15 15 H 1.09001 * 111.00003 * 277.43047 * 14 11 10 16 16 N 1.46496 * 111.00397 * 153.57581 * 14 11 10 17 17 C 1.36935 * 120.00087 * 155.00449 * 16 14 11 18 18 H 1.08005 * 119.99923 * 359.97438 * 17 16 14 19 19 C 1.38812 * 120.00226 * 180.02562 * 17 16 14 20 20 N 1.31620 * 120.00114 * 179.97438 * 19 17 16 21 21 Si 1.86796 * 119.99926 * 359.97438 * 19 17 16 22 22 H 1.48498 * 109.47021 * 90.00243 * 21 19 17 23 23 H 1.48498 * 109.47373 * 210.00308 * 21 19 17 24 24 H 1.48500 * 109.47403 * 330.00276 * 21 19 17 25 25 C 1.47425 * 125.65136 * 359.95236 * 9 7 6 26 26 O 1.34014 * 125.58019 * 359.97422 * 3 2 1 27 27 H 1.08993 * 109.47007 * 299.99558 * 1 2 3 28 28 H 1.08998 * 109.47074 * 60.00000 * 1 2 3 29 29 H 1.09002 * 109.46732 * 179.97438 * 1 2 3 30 30 H 1.08001 * 126.40795 * 0.02562 * 4 3 2 31 31 H 1.08006 * 126.66278 * 180.24223 * 5 4 3 32 32 H 1.08997 * 109.88723 * 59.48678 * 10 9 7 33 33 H 1.08998 * 109.88661 * 298.31659 * 10 9 7 34 34 H 1.08999 * 109.47239 * 58.54617 * 13 11 10 35 35 H 1.09007 * 109.46791 * 178.54602 * 13 11 10 36 36 H 1.08997 * 109.47298 * 298.53811 * 13 11 10 37 37 H 0.97002 * 120.00223 * 334.99627 * 16 14 11 38 38 H 0.97000 * 120.00028 * 179.97438 * 20 19 17 39 39 H 1.08997 * 110.36855 * 323.00479 * 25 9 7 40 40 H 1.08999 * 110.36490 * 85.21794 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0435 1.2062 0.0000 4 6 3.3893 1.4093 -0.0005 5 6 3.5983 2.7926 -0.0067 6 6 2.3520 3.3810 -0.0009 7 6 2.0793 4.8167 -0.0019 8 8 3.0016 5.6117 -0.0029 9 7 0.8068 5.2608 -0.0015 10 6 0.3915 6.6712 -0.0019 11 6 -1.1513 6.6946 -0.0295 12 1 -1.5534 6.8048 0.9776 13 6 -1.6595 7.8123 -0.9423 14 6 -1.5096 5.3028 -0.6143 15 1 -1.4492 5.3090 -1.7026 16 7 -2.8357 4.8705 -0.1664 17 6 -3.5547 3.9786 -0.9165 18 1 -3.1442 3.5940 -1.8385 19 6 -4.8115 3.5694 -0.4924 20 7 -5.5027 2.7124 -1.2136 21 14 -5.5218 4.2351 1.1019 22 1 -6.2927 5.4729 0.8215 23 1 -6.4201 3.2186 1.7061 24 1 -4.4172 4.5429 2.0455 25 6 -0.3992 4.4129 -0.0012 26 8 1.4263 2.3957 -0.0005 27 1 -0.3633 0.5137 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 4.1528 0.6455 -0.0013 31 1 4.5513 3.3008 -0.0123 32 1 0.7857 7.1735 -0.8852 33 1 0.7536 7.1645 0.9001 34 1 -1.2706 7.6638 -1.9497 35 1 -2.7491 7.7940 -0.9671 36 1 -1.3209 8.7755 -0.5604 37 1 -3.2045 5.2161 0.6615 38 1 -6.3808 2.4263 -0.9171 39 1 -0.2404 3.5271 -0.6161 40 1 -0.6603 4.1251 1.0172 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000939387788.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:34:49 Heat of formation + Delta-G solvation = -55.541255 kcal Electronic energy + Delta-G solvation = -24254.332607 eV Core-core repulsion = 20650.197713 eV Total energy + Delta-G solvation = -3604.134894 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -43.84842 -41.09748 -39.59761 -39.00719 -36.04946 -34.41963 -33.96180 -32.94602 -30.76072 -29.57298 -28.52291 -27.14322 -25.69901 -23.86547 -23.04650 -22.58463 -21.60650 -20.99246 -19.62061 -19.55491 -18.48551 -18.21970 -17.46945 -17.06640 -16.43885 -16.34784 -16.03560 -15.48343 -15.21075 -14.84872 -14.70049 -14.54360 -14.30968 -14.29670 -14.02272 -13.83795 -13.52181 -13.18072 -13.08380 -12.98082 -12.93977 -12.57350 -12.31003 -12.12660 -11.96550 -11.83458 -11.52898 -11.41097 -11.11792 -11.00821 -9.90942 -9.38577 -9.14910 -8.02789 -5.38631 -0.08415 1.13307 1.27786 1.39982 1.42261 1.49081 1.79217 2.02694 2.17253 2.47917 3.21967 3.27599 3.63097 3.68987 3.77075 3.80310 4.03088 4.16697 4.19149 4.25779 4.27999 4.35563 4.49581 4.56041 4.65414 4.66331 4.80871 4.82768 4.85573 5.02037 5.03074 5.10183 5.25346 5.26770 5.43427 5.49574 5.75388 6.03379 6.19501 6.26126 6.85635 7.04833 7.77605 7.98073 9.17800 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.012840 B = 0.005837 C = 0.004226 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2180.207013 B = 4795.752574 C = 6624.311278 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.265 6.265 3 C 0.203 3.797 4 C -0.237 4.237 5 C -0.070 4.070 6 C -0.130 4.130 7 C 0.616 3.384 8 O -0.557 6.557 9 N -0.608 5.608 10 C 0.117 3.883 11 C -0.105 4.105 12 H 0.092 0.908 13 C -0.131 4.131 14 C 0.176 3.824 15 H 0.065 0.935 16 N -0.733 5.733 17 C -0.233 4.233 18 H 0.059 0.941 19 C -0.053 4.053 20 N -0.979 5.979 21 Si 0.948 3.052 22 H -0.278 1.278 23 H -0.299 1.299 24 H -0.251 1.251 25 C 0.089 3.911 26 O -0.193 6.193 27 H 0.061 0.939 28 H 0.055 0.945 29 H 0.141 0.859 30 H 0.192 0.808 31 H 0.185 0.815 32 H 0.079 0.921 33 H 0.081 0.919 34 H 0.056 0.944 35 H 0.054 0.946 36 H 0.079 0.921 37 H 0.370 0.630 38 H 0.258 0.742 39 H 0.066 0.934 40 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.833 1.598 4.693 15.640 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.178 6.178 3 C 0.106 3.894 4 C -0.257 4.257 5 C -0.091 4.091 6 C -0.180 4.180 7 C 0.407 3.593 8 O -0.439 6.439 9 N -0.339 5.339 10 C -0.004 4.004 11 C -0.125 4.125 12 H 0.110 0.890 13 C -0.189 4.189 14 C 0.065 3.935 15 H 0.083 0.917 16 N -0.375 5.375 17 C -0.363 4.363 18 H 0.077 0.923 19 C -0.245 4.245 20 N -0.628 5.628 21 Si 0.776 3.224 22 H -0.204 1.204 23 H -0.226 1.226 24 H -0.175 1.175 25 C -0.037 4.037 26 O -0.093 6.093 27 H 0.080 0.920 28 H 0.074 0.926 29 H 0.158 0.842 30 H 0.209 0.791 31 H 0.203 0.797 32 H 0.098 0.902 33 H 0.099 0.901 34 H 0.075 0.925 35 H 0.073 0.927 36 H 0.098 0.902 37 H 0.204 0.796 38 H 0.067 0.933 39 H 0.084 0.916 40 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 15.040 1.733 4.513 15.798 hybrid contribution -1.228 -0.246 0.688 1.429 sum 13.812 1.487 5.202 14.834 Atomic orbital electron populations 1.23366 0.75027 1.06785 1.02539 1.86377 1.24352 1.18333 1.88768 1.21388 0.90433 0.78550 0.99026 1.21117 0.91933 0.97053 1.15576 1.22256 0.97520 0.92892 0.96400 1.21810 0.87869 0.87067 1.21279 1.16165 0.81745 0.84630 0.76779 1.90840 1.44029 1.54760 1.54263 1.48366 1.04892 1.09539 1.71146 1.22149 0.94293 0.80855 1.03151 1.22511 0.93213 0.95463 1.01327 0.88977 1.21656 1.01220 0.97323 0.98695 1.21478 0.83031 0.91734 0.97247 0.91656 1.42522 1.16022 1.52828 1.26090 1.18963 0.97706 1.16693 1.02988 0.92329 1.25397 0.97500 0.99732 1.01871 1.69869 1.13784 1.37838 1.41337 0.85522 0.78668 0.77603 0.80637 1.20416 1.22611 1.17524 1.23202 0.84469 0.94786 1.01264 1.84166 1.37692 1.14613 1.72859 0.92045 0.92620 0.84153 0.79099 0.79744 0.90239 0.90052 0.92469 0.92725 0.90164 0.79625 0.93308 0.91613 0.91791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.38 10.74 113.37 1.22 1.60 16 2 O -0.26 -6.58 10.55 -64.38 -0.68 -7.26 16 3 C 0.20 5.47 7.86 67.32 0.53 6.00 16 4 C -0.24 -5.33 10.89 22.17 0.24 -5.09 16 5 C -0.07 -1.73 10.66 22.58 0.24 -1.49 16 6 C -0.13 -3.96 6.96 24.22 0.17 -3.80 16 7 C 0.62 20.30 7.80 86.29 0.67 20.97 16 8 O -0.56 -20.00 17.20 -4.57 -0.08 -20.08 16 9 N -0.61 -18.99 3.33 -817.02 -2.72 -21.71 16 10 C 0.12 3.08 6.46 86.73 0.56 3.64 16 11 C -0.11 -2.81 3.20 -9.60 -0.03 -2.84 16 12 H 0.09 2.34 8.00 -2.39 -0.02 2.32 16 13 C -0.13 -3.08 9.13 71.98 0.66 -2.42 16 14 C 0.18 6.12 3.16 46.40 0.15 6.26 16 15 H 0.07 2.45 7.99 -2.39 -0.02 2.43 16 16 N -0.73 -30.89 5.05 -316.32 -1.60 -32.48 16 17 C -0.23 -12.23 10.44 84.03 0.88 -11.35 16 18 H 0.06 3.41 8.06 -2.91 -0.02 3.39 16 19 C -0.05 -2.91 5.50 84.86 0.47 -2.44 16 20 N -0.98 -59.39 13.97 21.65 0.30 -59.09 16 21 Si 0.95 42.45 27.73 68.60 1.90 44.36 16 22 H -0.28 -12.21 7.11 99.48 0.71 -11.51 16 23 H -0.30 -13.80 7.11 99.48 0.71 -13.09 16 24 H -0.25 -10.01 6.52 99.48 0.65 -9.36 16 25 C 0.09 2.98 5.86 86.86 0.51 3.49 16 26 O -0.19 -5.94 7.33 13.51 0.10 -5.84 16 27 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 28 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 29 H 0.14 2.31 8.14 -2.39 -0.02 2.29 16 30 H 0.19 3.03 8.06 -2.91 -0.02 3.00 16 31 H 0.19 3.69 8.06 -2.91 -0.02 3.67 16 32 H 0.08 1.99 7.82 -2.39 -0.02 1.97 16 33 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 34 H 0.06 1.34 8.13 -2.39 -0.02 1.32 16 35 H 0.05 1.43 8.14 -2.38 -0.02 1.42 16 36 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 37 H 0.37 14.89 5.63 -92.71 -0.52 14.37 16 38 H 0.26 15.01 8.31 -92.71 -0.77 14.24 16 39 H 0.07 2.39 6.21 -2.39 -0.01 2.38 16 40 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16 Total: -1.00 -66.31 337.80 3.96 -62.35 By element: Atomic # 1 Polarization: 26.77 SS G_CDS: 0.47 Total: 27.24 kcal Atomic # 6 Polarization: 6.27 SS G_CDS: 6.26 Total: 12.52 kcal Atomic # 7 Polarization: -109.27 SS G_CDS: -4.01 Total: -113.28 kcal Atomic # 8 Polarization: -32.53 SS G_CDS: -0.66 Total: -33.18 kcal Atomic # 14 Polarization: 42.45 SS G_CDS: 1.90 Total: 44.36 kcal Total: -66.31 3.96 -62.35 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000939387788.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.804 kcal (2) G-P(sol) polarization free energy of solvation -66.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.962 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.345 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds