Wall clock time and date at job start Tue Mar 31 2020 07:34:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35369 * 117.00299 * 2 1 4 4 C 1.36090 * 125.57906 * 179.97438 * 3 2 1 5 5 C 1.39912 * 107.18007 * 179.97438 * 4 3 2 6 6 C 1.37834 * 106.67328 * 359.97438 * 5 4 3 7 7 C 1.46127 * 126.03082 * 179.97438 * 6 5 4 8 8 O 1.21771 * 120.00161 * 0.02562 * 7 6 5 9 9 N 1.34777 * 120.00104 * 180.02562 * 7 6 5 10 10 C 1.47430 * 125.64711 * 359.95960 * 9 7 6 11 11 C 1.54910 * 104.83204 * 204.16577 * 10 9 7 12 12 C 1.55161 * 101.58039 * 322.98954 * 11 10 9 13 13 H 1.08992 * 110.87119 * 153.93854 * 12 11 10 14 14 N 1.46500 * 110.71830 * 277.14155 * 12 11 10 15 15 C 1.36943 * 119.99878 * 268.51939 * 14 12 11 16 16 H 1.07996 * 119.99698 * 0.02562 * 15 14 12 17 17 C 1.38809 * 119.99902 * 179.97438 * 15 14 12 18 18 N 1.31620 * 120.00319 * 0.02562 * 17 15 14 19 19 Si 1.86798 * 120.00011 * 180.02562 * 17 15 14 20 20 H 1.48506 * 109.47297 * 59.99967 * 19 17 15 21 21 H 1.48503 * 109.47261 * 300.00148 * 19 17 15 22 22 H 1.48500 * 109.47454 * 180.02562 * 19 17 15 23 23 C 1.47015 * 125.65240 * 180.02562 * 9 7 6 24 24 H 1.09002 * 109.88497 * 59.48256 * 23 9 7 25 25 C 1.53003 * 110.01091 * 298.39762 * 23 9 7 26 26 O 1.34009 * 125.57951 * 0.27860 * 3 2 1 27 27 H 1.09000 * 109.47172 * 300.00452 * 1 2 3 28 28 H 1.09002 * 109.47147 * 60.00195 * 1 2 3 29 29 H 1.08997 * 109.47319 * 180.02562 * 1 2 3 30 30 H 1.08003 * 126.41418 * 0.02562 * 4 3 2 31 31 H 1.07990 * 126.66773 * 179.97438 * 5 4 3 32 32 H 1.09004 * 110.36814 * 323.00251 * 10 9 7 33 33 H 1.09002 * 110.36664 * 85.21427 * 10 9 7 34 34 H 1.09002 * 111.00118 * 204.92068 * 11 10 9 35 35 H 1.08995 * 111.00694 * 81.06331 * 11 10 9 36 36 H 0.97000 * 120.00415 * 88.51888 * 14 12 11 37 37 H 0.97001 * 119.99542 * 359.97438 * 18 17 15 38 38 H 1.09007 * 109.46632 * 302.11097 * 25 23 9 39 39 H 1.08997 * 109.47439 * 62.10906 * 25 23 9 40 40 H 1.08993 * 109.47212 * 182.11550 * 25 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0436 1.2061 0.0000 4 6 3.3893 1.4091 0.0005 5 6 3.5986 2.7924 -0.0003 6 6 2.3522 3.3810 -0.0019 7 6 2.0795 4.8166 -0.0026 8 8 3.0020 5.6115 -0.0023 9 7 0.8071 5.2609 -0.0036 10 6 -0.3990 4.4130 -0.0049 11 6 -1.5086 5.3029 -0.6187 12 6 -1.1508 6.6947 -0.0336 13 1 -1.5122 7.4930 -0.6819 14 7 -1.6926 6.8430 1.3194 15 6 -2.9358 7.3872 1.5033 16 1 -3.5168 7.7066 0.6509 17 6 -3.4494 7.5272 2.7853 18 7 -2.7414 7.1374 3.8241 19 14 -5.1453 8.2688 3.0361 20 1 -6.1571 7.4399 2.3329 21 1 -5.1683 9.6487 2.4878 22 1 -5.4588 8.3081 4.4871 23 6 0.3919 6.6712 -0.0050 24 1 0.7870 7.1731 -0.8882 25 6 0.8993 7.3676 1.2594 26 8 1.4265 2.3957 0.0053 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 4.1528 0.6452 0.0006 31 1 4.5515 3.3005 0.0002 32 1 -0.2395 3.5273 -0.6200 33 1 -0.6612 4.1248 1.0131 34 1 -2.4956 4.9814 -0.2863 35 1 -1.4472 5.3090 -1.7069 36 1 -1.1709 6.5558 2.0850 37 1 -1.8608 6.7520 3.6938 38 1 0.5151 6.8498 2.1384 39 1 1.9890 7.3472 1.2731 40 1 0.5551 8.4017 1.2676 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000987246574.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:34:38 Heat of formation + Delta-G solvation = -29.821717 kcal Electronic energy + Delta-G solvation = -24343.722587 eV Core-core repulsion = 20740.702975 eV Total energy + Delta-G solvation = -3603.019611 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.87406 -39.93000 -38.74377 -37.54359 -34.35963 -33.33366 -31.82509 -30.96327 -29.76464 -28.60840 -27.24590 -25.24975 -23.71816 -23.37644 -22.11693 -21.66154 -20.19459 -19.22441 -18.57879 -17.65548 -17.25122 -17.12643 -16.19208 -15.67812 -15.31376 -15.14228 -14.79891 -14.03694 -13.71060 -13.51536 -13.44815 -13.38804 -13.18241 -12.76856 -12.72749 -12.43141 -12.35942 -11.92084 -11.79107 -11.32168 -11.24666 -11.05537 -10.72350 -10.37816 -10.27067 -10.16468 -10.00096 -9.95696 -9.25527 -9.00175 -8.57683 -8.14926 -7.14268 -6.17550 -3.19080 0.99334 2.05828 2.22522 2.86790 3.19926 3.27017 3.47526 3.50444 3.68244 4.54818 4.60387 4.67794 4.76077 4.82501 4.96735 5.08874 5.17742 5.29640 5.32988 5.45000 5.50758 5.59660 5.63442 5.66879 5.72252 5.83822 5.97329 6.15083 6.20635 6.27755 6.33099 6.39507 6.49192 6.61161 6.73247 6.84352 6.93491 7.62782 7.73522 8.17619 8.67362 9.12384 9.98970 10.13422 11.29827 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.019324 B = 0.004255 C = 0.003774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1448.620241 B = 6578.212392 C = 7417.865087 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.264 6.264 3 C 0.207 3.793 4 C -0.242 4.242 5 C -0.089 4.089 6 C -0.089 4.089 7 C 0.616 3.384 8 O -0.528 6.528 9 N -0.600 5.600 10 C 0.107 3.893 11 C -0.159 4.159 12 C 0.178 3.822 13 H 0.074 0.926 14 N -0.724 5.724 15 C -0.336 4.336 16 H 0.066 0.934 17 C -0.041 4.041 18 N -0.940 5.940 19 Si 1.080 2.920 20 H -0.295 1.295 21 H -0.295 1.295 22 H -0.285 1.285 23 C 0.125 3.875 24 H 0.076 0.924 25 C -0.149 4.149 26 O -0.182 6.182 27 H 0.066 0.934 28 H 0.064 0.936 29 H 0.110 0.890 30 H 0.162 0.838 31 H 0.166 0.834 32 H 0.070 0.930 33 H 0.069 0.931 34 H 0.088 0.912 35 H 0.063 0.937 36 H 0.371 0.629 37 H 0.254 0.746 38 H 0.059 0.941 39 H 0.058 0.942 40 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.693 -12.556 -9.957 17.775 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.178 6.178 3 C 0.110 3.890 4 C -0.261 4.261 5 C -0.109 4.109 6 C -0.139 4.139 7 C 0.405 3.595 8 O -0.407 6.407 9 N -0.332 5.332 10 C -0.016 4.016 11 C -0.200 4.200 12 C 0.066 3.934 13 H 0.092 0.908 14 N -0.368 5.368 15 C -0.467 4.467 16 H 0.084 0.916 17 C -0.239 4.239 18 N -0.585 5.585 19 Si 0.910 3.090 20 H -0.223 1.223 21 H -0.222 1.222 22 H -0.211 1.211 23 C 0.022 3.978 24 H 0.094 0.906 25 C -0.207 4.207 26 O -0.082 6.082 27 H 0.085 0.915 28 H 0.083 0.917 29 H 0.128 0.872 30 H 0.179 0.821 31 H 0.184 0.816 32 H 0.088 0.912 33 H 0.087 0.913 34 H 0.107 0.893 35 H 0.082 0.918 36 H 0.207 0.793 37 H 0.066 0.934 38 H 0.078 0.922 39 H 0.077 0.923 40 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 6.701 -11.750 -8.941 16.214 hybrid contribution 1.003 -0.813 -0.951 1.604 sum 7.703 -12.564 -9.892 17.749 Atomic orbital electron populations 1.23197 0.76445 1.04961 1.02992 1.86383 1.23265 1.18940 1.89209 1.20876 0.89661 0.78507 0.99971 1.20739 0.92037 0.96839 1.16525 1.21940 0.97719 0.92475 0.98781 1.22009 0.86874 0.87361 1.17664 1.15984 0.82172 0.83868 0.77517 1.90873 1.43598 1.53722 1.52524 1.48521 1.04797 1.08898 1.70956 1.22372 0.84343 0.93537 1.01301 1.23525 0.98507 0.98989 0.99000 1.21136 0.88575 0.94698 0.89014 0.90842 1.42551 1.18604 1.74594 1.01010 1.20038 0.93797 1.37826 0.94997 0.91571 1.25768 1.05778 1.01223 0.91111 1.70897 1.12782 1.44053 1.30754 0.83245 0.74257 0.75543 0.75913 1.22270 1.22199 1.21070 1.22095 0.96517 0.80114 0.99079 0.90615 1.21925 1.00642 1.01027 0.97112 1.84142 1.37378 1.14096 1.72596 0.91518 0.91745 0.87163 0.82061 0.81604 0.91206 0.91287 0.89329 0.91839 0.79297 0.93433 0.92166 0.92348 0.91173 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.14 10.74 101.05 1.09 1.23 16 2 O -0.26 -2.81 10.55 -41.03 -0.43 -3.24 16 3 C 0.21 2.54 7.86 29.96 0.24 2.78 16 4 C -0.24 -2.77 10.89 -39.73 -0.43 -3.20 16 5 C -0.09 -1.14 10.66 -39.10 -0.42 -1.55 16 6 C -0.09 -1.34 6.95 -36.57 -0.25 -1.59 16 7 C 0.62 10.67 7.60 -13.10 -0.10 10.57 16 8 O -0.53 -10.20 15.92 5.13 0.08 -10.12 16 9 N -0.60 -10.18 3.07 -164.73 -0.51 -10.69 16 10 C 0.11 1.69 6.14 -2.53 -0.02 1.67 16 11 C -0.16 -2.59 6.77 -24.58 -0.17 -2.76 16 12 C 0.18 3.37 3.48 -66.10 -0.23 3.14 16 13 H 0.07 1.39 8.09 -51.93 -0.42 0.97 16 14 N -0.72 -16.97 4.55 -51.65 -0.23 -17.20 16 15 C -0.34 -8.90 9.96 -15.06 -0.15 -9.05 16 16 H 0.07 1.72 7.83 -52.49 -0.41 1.31 16 17 C -0.04 -1.14 5.50 -17.43 -0.10 -1.23 16 18 N -0.94 -28.25 13.70 55.49 0.76 -27.49 16 19 Si 1.08 25.04 29.92 -169.99 -5.09 19.95 16 20 H -0.30 -6.52 7.11 56.52 0.40 -6.12 16 21 H -0.29 -6.56 7.11 56.52 0.40 -6.15 16 22 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 23 C 0.13 2.21 3.42 -66.96 -0.23 1.98 16 24 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 25 C -0.15 -2.80 8.49 37.16 0.32 -2.49 16 26 O -0.18 -2.51 7.33 -19.26 -0.14 -2.66 16 27 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 28 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 29 H 0.11 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.16 1.43 8.06 -52.48 -0.42 1.00 16 31 H 0.17 1.87 8.06 -52.49 -0.42 1.44 16 32 H 0.07 0.98 6.22 -51.93 -0.32 0.66 16 33 H 0.07 1.20 8.14 -51.93 -0.42 0.77 16 34 H 0.09 1.56 8.14 -51.93 -0.42 1.14 16 35 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 36 H 0.37 9.18 4.53 -40.82 -0.18 9.00 16 37 H 0.25 7.58 6.77 -40.82 -0.28 7.31 16 38 H 0.06 1.24 6.24 -51.92 -0.32 0.91 16 39 H 0.06 1.09 6.91 -51.93 -0.36 0.73 16 40 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 LS Contribution 332.65 15.07 5.01 5.01 Total: -1.00 -31.51 332.65 -6.32 -37.83 By element: Atomic # 1 Polarization: 14.43 SS G_CDS: -5.32 Total: 9.11 kcal Atomic # 6 Polarization: -0.05 SS G_CDS: -0.45 Total: -0.50 kcal Atomic # 7 Polarization: -55.40 SS G_CDS: 0.02 Total: -55.38 kcal Atomic # 8 Polarization: -15.53 SS G_CDS: -0.49 Total: -16.02 kcal Atomic # 14 Polarization: 25.04 SS G_CDS: -5.09 Total: 19.95 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -31.51 -6.32 -37.83 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000987246574.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.007 kcal (2) G-P(sol) polarization free energy of solvation -31.508 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.501 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.828 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.822 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds