Wall clock time and date at job start Tue Mar 31 2020 07:34:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35369 * 117.00299 * 2 1 4 4 C 1.36090 * 125.57906 * 179.97438 * 3 2 1 5 5 C 1.39912 * 107.18007 * 179.97438 * 4 3 2 6 6 C 1.37834 * 106.67328 * 359.97438 * 5 4 3 7 7 C 1.46127 * 126.03082 * 179.97438 * 6 5 4 8 8 O 1.21771 * 120.00161 * 0.02562 * 7 6 5 9 9 N 1.34777 * 120.00104 * 180.02562 * 7 6 5 10 10 C 1.47430 * 125.64711 * 359.95960 * 9 7 6 11 11 C 1.54910 * 104.83204 * 204.16577 * 10 9 7 12 12 C 1.55161 * 101.58039 * 322.98954 * 11 10 9 13 13 H 1.08992 * 110.87119 * 153.93854 * 12 11 10 14 14 N 1.46500 * 110.71830 * 277.14155 * 12 11 10 15 15 C 1.36943 * 119.99878 * 268.51939 * 14 12 11 16 16 H 1.07996 * 119.99698 * 0.02562 * 15 14 12 17 17 C 1.38809 * 119.99902 * 179.97438 * 15 14 12 18 18 N 1.31620 * 120.00319 * 0.02562 * 17 15 14 19 19 Si 1.86798 * 120.00011 * 180.02562 * 17 15 14 20 20 H 1.48506 * 109.47297 * 59.99967 * 19 17 15 21 21 H 1.48503 * 109.47261 * 300.00148 * 19 17 15 22 22 H 1.48500 * 109.47454 * 180.02562 * 19 17 15 23 23 C 1.47015 * 125.65240 * 180.02562 * 9 7 6 24 24 H 1.09002 * 109.88497 * 59.48256 * 23 9 7 25 25 C 1.53003 * 110.01091 * 298.39762 * 23 9 7 26 26 O 1.34009 * 125.57951 * 0.27860 * 3 2 1 27 27 H 1.09000 * 109.47172 * 300.00452 * 1 2 3 28 28 H 1.09002 * 109.47147 * 60.00195 * 1 2 3 29 29 H 1.08997 * 109.47319 * 180.02562 * 1 2 3 30 30 H 1.08003 * 126.41418 * 0.02562 * 4 3 2 31 31 H 1.07990 * 126.66773 * 179.97438 * 5 4 3 32 32 H 1.09004 * 110.36814 * 323.00251 * 10 9 7 33 33 H 1.09002 * 110.36664 * 85.21427 * 10 9 7 34 34 H 1.09002 * 111.00118 * 204.92068 * 11 10 9 35 35 H 1.08995 * 111.00694 * 81.06331 * 11 10 9 36 36 H 0.97000 * 120.00415 * 88.51888 * 14 12 11 37 37 H 0.97001 * 119.99542 * 359.97438 * 18 17 15 38 38 H 1.09007 * 109.46632 * 302.11097 * 25 23 9 39 39 H 1.08997 * 109.47439 * 62.10906 * 25 23 9 40 40 H 1.08993 * 109.47212 * 182.11550 * 25 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0436 1.2061 0.0000 4 6 3.3893 1.4091 0.0005 5 6 3.5986 2.7924 -0.0003 6 6 2.3522 3.3810 -0.0019 7 6 2.0795 4.8166 -0.0026 8 8 3.0020 5.6115 -0.0023 9 7 0.8071 5.2609 -0.0036 10 6 -0.3990 4.4130 -0.0049 11 6 -1.5086 5.3029 -0.6187 12 6 -1.1508 6.6947 -0.0336 13 1 -1.5122 7.4930 -0.6819 14 7 -1.6926 6.8430 1.3194 15 6 -2.9358 7.3872 1.5033 16 1 -3.5168 7.7066 0.6509 17 6 -3.4494 7.5272 2.7853 18 7 -2.7414 7.1374 3.8241 19 14 -5.1453 8.2688 3.0361 20 1 -6.1571 7.4399 2.3329 21 1 -5.1683 9.6487 2.4878 22 1 -5.4588 8.3081 4.4871 23 6 0.3919 6.6712 -0.0050 24 1 0.7870 7.1731 -0.8882 25 6 0.8993 7.3676 1.2594 26 8 1.4265 2.3957 0.0053 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 4.1528 0.6452 0.0006 31 1 4.5515 3.3005 0.0002 32 1 -0.2395 3.5273 -0.6200 33 1 -0.6612 4.1248 1.0131 34 1 -2.4956 4.9814 -0.2863 35 1 -1.4472 5.3090 -1.7069 36 1 -1.1709 6.5558 2.0850 37 1 -1.8608 6.7520 3.6938 38 1 0.5151 6.8498 2.1384 39 1 1.9890 7.3472 1.2731 40 1 0.5551 8.4017 1.2676 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000987246574.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:34:37 Heat of formation + Delta-G solvation = -49.534748 kcal Electronic energy + Delta-G solvation = -24344.577408 eV Core-core repulsion = 20740.702975 eV Total energy + Delta-G solvation = -3603.874433 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -43.87440 -41.29867 -39.61705 -38.96525 -36.14467 -34.35560 -33.49247 -32.42591 -31.05797 -30.00384 -28.10347 -26.78329 -25.55859 -24.74464 -23.08795 -22.87723 -21.49752 -20.53492 -19.58168 -19.51744 -18.49868 -18.22188 -17.58466 -16.86997 -16.64520 -16.31164 -16.03279 -15.63761 -15.30663 -14.97090 -14.74084 -14.34415 -14.30389 -14.13832 -14.05555 -13.81879 -13.41522 -13.12423 -13.06142 -12.81066 -12.58893 -12.56012 -12.35381 -11.99120 -11.87004 -11.78132 -11.38676 -11.21858 -11.13960 -10.92193 -9.92437 -9.17808 -9.12383 -8.35395 -5.30527 -0.10242 1.06970 1.26355 1.61322 1.70451 1.76330 1.86276 2.01930 2.17956 2.73141 3.32888 3.44340 3.60941 3.66987 3.71727 3.86963 4.10263 4.11730 4.18356 4.21815 4.24576 4.28777 4.40234 4.50063 4.60231 4.64257 4.66840 4.78672 4.81586 4.93297 5.05025 5.14187 5.18993 5.22360 5.27236 5.47069 5.65245 6.03114 6.30226 6.50697 6.85190 7.09198 7.99348 8.12109 9.15362 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.019324 B = 0.004255 C = 0.003774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1448.620241 B = 6578.212392 C = 7417.865087 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.010 3.990 2 O -0.264 6.264 3 C 0.210 3.790 4 C -0.239 4.239 5 C -0.073 4.073 6 C -0.125 4.125 7 C 0.614 3.386 8 O -0.556 6.556 9 N -0.602 5.602 10 C 0.115 3.885 11 C -0.145 4.145 12 C 0.169 3.831 13 H 0.079 0.921 14 N -0.735 5.735 15 C -0.325 4.325 16 H 0.073 0.927 17 C -0.102 4.102 18 N -0.977 5.977 19 Si 1.126 2.874 20 H -0.276 1.276 21 H -0.279 1.279 22 H -0.299 1.299 23 C 0.130 3.870 24 H 0.091 0.909 25 C -0.137 4.137 26 O -0.190 6.190 27 H 0.059 0.941 28 H 0.069 0.931 29 H 0.141 0.859 30 H 0.190 0.810 31 H 0.179 0.821 32 H 0.093 0.907 33 H 0.048 0.952 34 H 0.076 0.924 35 H 0.094 0.906 36 H 0.362 0.638 37 H 0.241 0.759 38 H 0.035 0.965 39 H 0.057 0.943 40 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.569 -14.024 -11.789 19.823 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 O -0.178 6.178 3 C 0.112 3.888 4 C -0.259 4.259 5 C -0.093 4.093 6 C -0.175 4.175 7 C 0.405 3.595 8 O -0.438 6.438 9 N -0.334 5.334 10 C -0.007 4.007 11 C -0.186 4.186 12 C 0.059 3.941 13 H 0.097 0.903 14 N -0.378 5.378 15 C -0.456 4.456 16 H 0.091 0.909 17 C -0.293 4.293 18 N -0.625 5.625 19 Si 0.952 3.048 20 H -0.202 1.202 21 H -0.205 1.205 22 H -0.226 1.226 23 C 0.027 3.973 24 H 0.109 0.891 25 C -0.196 4.196 26 O -0.090 6.090 27 H 0.078 0.922 28 H 0.088 0.912 29 H 0.159 0.841 30 H 0.208 0.792 31 H 0.197 0.803 32 H 0.111 0.889 33 H 0.066 0.934 34 H 0.095 0.905 35 H 0.113 0.887 36 H 0.196 0.804 37 H 0.051 0.949 38 H 0.054 0.946 39 H 0.076 0.924 40 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 6.581 -13.240 -10.843 18.335 hybrid contribution 1.102 -0.481 -0.455 1.286 sum 7.683 -13.721 -11.298 19.363 Atomic orbital electron populations 1.23482 0.74881 1.07050 1.02896 1.86410 1.24829 1.17837 1.88739 1.21255 0.90255 0.78522 0.98735 1.21094 0.92400 0.96738 1.15657 1.22247 0.97501 0.93196 0.96390 1.21637 0.87866 0.86642 1.21368 1.16251 0.81683 0.84860 0.76712 1.90841 1.44191 1.54854 1.53937 1.48528 1.05218 1.08516 1.71145 1.22301 0.83737 0.94103 1.00536 1.23376 0.97891 0.96634 1.00657 1.21356 0.89291 0.96389 0.87029 0.90321 1.42681 1.17893 1.74669 1.02580 1.20387 0.94535 1.35702 0.94969 0.90858 1.27080 1.08719 1.02217 0.91326 1.71010 1.12829 1.46856 1.31848 0.82634 0.71118 0.75904 0.75167 1.20204 1.20524 1.22567 1.21965 0.95584 0.80939 0.98837 0.89094 1.21781 1.00365 1.00465 0.96943 1.84076 1.37477 1.14452 1.73040 0.92196 0.91245 0.84085 0.79228 0.80322 0.88944 0.93371 0.90514 0.88735 0.80394 0.94902 0.94555 0.92425 0.91800 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.14 10.74 113.37 1.22 1.36 16 2 O -0.26 -4.97 10.55 -64.39 -0.68 -5.65 16 3 C 0.21 4.71 7.86 67.32 0.53 5.24 16 4 C -0.24 -4.86 10.89 22.18 0.24 -4.62 16 5 C -0.07 -1.74 10.66 22.58 0.24 -1.50 16 6 C -0.13 -3.65 6.95 24.22 0.17 -3.48 16 7 C 0.61 21.09 7.60 86.29 0.66 21.74 16 8 O -0.56 -21.52 15.92 -4.58 -0.07 -21.60 16 9 N -0.60 -20.20 3.07 -793.29 -2.43 -22.64 16 10 C 0.12 3.55 6.14 86.85 0.53 4.08 16 11 C -0.14 -4.50 6.77 31.99 0.22 -4.28 16 12 C 0.17 6.30 3.48 46.18 0.16 6.46 16 13 H 0.08 2.86 8.09 -2.39 -0.02 2.84 16 14 N -0.74 -34.87 4.55 -317.34 -1.44 -36.31 16 15 C -0.32 -17.19 9.96 84.03 0.84 -16.35 16 16 H 0.07 3.72 7.83 -2.91 -0.02 3.69 16 17 C -0.10 -5.74 5.50 84.86 0.47 -5.27 16 18 N -0.98 -60.31 13.70 21.65 0.30 -60.01 16 19 Si 1.13 50.44 29.92 68.60 2.05 52.50 16 20 H -0.28 -11.36 7.11 99.48 0.71 -10.65 16 21 H -0.28 -11.65 7.11 99.48 0.71 -10.94 16 22 H -0.30 -13.99 7.11 99.48 0.71 -13.29 16 23 C 0.13 4.56 3.42 45.34 0.15 4.72 16 24 H 0.09 2.94 8.14 -2.39 -0.02 2.92 16 25 C -0.14 -5.30 8.49 71.98 0.61 -4.69 16 26 O -0.19 -4.99 7.33 13.51 0.10 -4.89 16 27 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 28 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 29 H 0.14 0.98 8.14 -2.39 -0.02 0.96 16 30 H 0.19 2.67 8.06 -2.91 -0.02 2.64 16 31 H 0.18 3.70 8.06 -2.92 -0.02 3.68 16 32 H 0.09 2.44 6.22 -2.39 -0.01 2.42 16 33 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 34 H 0.08 2.61 8.14 -2.39 -0.02 2.59 16 35 H 0.09 2.39 8.14 -2.39 -0.02 2.37 16 36 H 0.36 18.56 4.53 -92.71 -0.42 18.14 16 37 H 0.24 14.97 6.77 -92.71 -0.63 14.34 16 38 H 0.04 1.56 6.24 -2.38 -0.01 1.54 16 39 H 0.06 2.20 6.91 -2.39 -0.02 2.19 16 40 H 0.06 2.49 8.14 -2.39 -0.02 2.47 16 Total: -1.00 -68.53 332.65 4.63 -63.90 By element: Atomic # 1 Polarization: 30.50 SS G_CDS: 0.78 Total: 31.28 kcal Atomic # 6 Polarization: -2.62 SS G_CDS: 6.03 Total: 3.41 kcal Atomic # 7 Polarization: -115.38 SS G_CDS: -3.58 Total: -118.96 kcal Atomic # 8 Polarization: -31.48 SS G_CDS: -0.65 Total: -32.13 kcal Atomic # 14 Polarization: 50.44 SS G_CDS: 2.05 Total: 52.50 kcal Total: -68.53 4.63 -63.90 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000987246574.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.366 kcal (2) G-P(sol) polarization free energy of solvation -68.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.634 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.901 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds