Wall clock time and date at job start Tue Mar 31 2020 07:34:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35374 * 116.99780 * 2 1 4 4 C 1.36101 * 125.57620 * 180.02562 * 3 2 1 5 5 C 1.39908 * 107.17243 * 180.02562 * 4 3 2 6 6 C 1.37825 * 106.68135 * 359.97438 * 5 4 3 7 7 C 1.46122 * 126.03161 * 179.97438 * 6 5 4 8 8 O 1.21771 * 120.00289 * 0.02562 * 7 6 5 9 9 N 1.34784 * 120.00049 * 180.02562 * 7 6 5 10 10 C 1.47426 * 125.64612 * 0.02562 * 9 7 6 11 11 C 1.54905 * 104.83014 * 155.83616 * 10 9 7 12 12 C 1.55163 * 101.58311 * 37.00920 * 11 10 9 13 13 H 1.09002 * 110.71796 * 83.03924 * 12 11 10 14 14 N 1.46500 * 110.72135 * 206.13380 * 12 11 10 15 15 C 1.36936 * 120.00116 * 273.54817 * 14 12 11 16 16 H 1.08002 * 120.00042 * 359.97438 * 15 14 12 17 17 C 1.38811 * 119.99857 * 179.97438 * 15 14 12 18 18 N 1.31616 * 119.99556 * 179.97438 * 17 15 14 19 19 Si 1.86791 * 120.00091 * 359.97438 * 17 15 14 20 20 H 1.48503 * 109.47443 * 90.00106 * 19 17 15 21 21 H 1.48505 * 109.47081 * 209.99832 * 19 17 15 22 22 H 1.48503 * 109.47292 * 329.99987 * 19 17 15 23 23 C 1.47019 * 125.64840 * 179.71914 * 9 7 6 24 24 H 1.09001 * 109.88272 * 300.51553 * 23 9 7 25 25 C 1.53008 * 109.88077 * 61.67759 * 23 9 7 26 26 O 1.34009 * 125.58107 * 0.26974 * 3 2 1 27 27 H 1.09002 * 109.46732 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47285 * 299.99707 * 1 2 3 29 29 H 1.08995 * 109.47120 * 59.99771 * 1 2 3 30 30 H 1.07998 * 126.41139 * 359.97438 * 4 3 2 31 31 H 1.08000 * 126.65353 * 180.02562 * 5 4 3 32 32 H 1.09004 * 110.36773 * 274.67496 * 10 9 7 33 33 H 1.08996 * 110.36616 * 36.99677 * 10 9 7 34 34 H 1.09001 * 111.00537 * 155.08297 * 11 10 9 35 35 H 1.09000 * 111.00733 * 278.93858 * 11 10 9 36 36 H 0.97006 * 119.99835 * 93.54403 * 14 12 11 37 37 H 0.97005 * 119.99637 * 180.02562 * 18 17 15 38 38 H 1.09002 * 109.47004 * 58.54897 * 25 23 9 39 39 H 1.09005 * 109.46674 * 178.54695 * 25 23 9 40 40 H 1.08993 * 109.46984 * 298.54378 * 25 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0435 1.2062 0.0000 4 6 3.3893 1.4092 -0.0005 5 6 3.5984 2.7926 0.0003 6 6 2.3521 3.3811 0.0007 7 6 2.0794 4.8166 0.0020 8 8 3.0017 5.6116 0.0025 9 7 0.8068 5.2609 0.0028 10 6 -0.3992 4.4130 0.0029 11 6 -1.5091 5.3023 0.6167 12 6 -1.1512 6.6946 0.0329 13 1 -1.5565 6.8069 -0.9727 14 7 -1.6373 7.7642 0.9081 15 6 -2.9178 8.2303 0.7733 16 1 -3.5692 7.8098 0.0215 17 6 -3.3785 9.2434 1.6029 18 7 -4.6091 9.6918 1.4729 19 14 -2.2521 9.9703 2.9036 20 1 -1.5079 11.1194 2.3279 21 1 -3.0633 10.4342 4.0577 22 1 -1.2894 8.9354 3.3592 23 6 0.3916 6.6712 0.0100 24 1 0.7850 7.1689 0.8964 25 6 0.9012 7.3701 -1.2521 26 8 1.4264 2.3957 0.0051 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 4.1528 0.6454 -0.0006 31 1 4.5514 3.3006 -0.0002 32 1 -0.6621 4.1271 -1.0156 33 1 -0.2399 3.5269 0.6173 34 1 -2.4960 4.9810 0.2838 35 1 -1.4482 5.3077 1.7050 36 1 -1.0521 8.1422 1.5831 37 1 -4.9310 10.4000 2.0524 38 1 0.5081 6.8620 -2.1327 39 1 0.5680 8.4080 -1.2523 40 1 1.9906 7.3383 -1.2703 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000987246582.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:34:44 Heat of formation + Delta-G solvation = -31.383646 kcal Electronic energy + Delta-G solvation = -24006.456027 eV Core-core repulsion = 20403.368685 eV Total energy + Delta-G solvation = -3603.087342 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.96304 -39.98545 -38.82134 -37.55923 -34.37351 -33.41157 -31.88212 -31.11637 -30.16368 -29.22484 -27.39587 -25.41627 -23.78052 -22.80138 -22.15964 -21.69416 -20.35200 -19.70861 -18.73160 -17.64252 -17.36259 -17.23547 -16.34226 -15.77390 -15.41643 -15.04698 -14.53156 -14.27556 -13.92991 -13.56001 -13.47508 -13.29850 -13.20544 -12.88415 -12.76688 -12.51875 -12.37484 -12.05958 -11.88952 -11.85483 -11.34295 -11.27631 -10.93058 -10.67828 -10.43013 -10.24923 -10.17803 -10.01163 -9.66546 -9.01204 -8.68644 -8.24479 -7.38310 -5.85391 -3.22926 0.90181 1.96367 2.14247 2.76791 3.08666 3.16189 3.33927 3.37448 3.42333 4.45039 4.52440 4.58852 4.67351 4.73430 4.87983 5.00010 5.03050 5.15206 5.22839 5.35356 5.40626 5.50249 5.53153 5.58879 5.63280 5.76025 5.84231 5.94179 6.06602 6.15860 6.21807 6.30154 6.45974 6.48492 6.56581 6.75229 6.84726 7.51033 7.88144 8.07466 8.32982 9.09503 9.82145 10.00289 11.32301 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.022961 B = 0.003873 C = 0.003541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1219.148962 B = 7228.227297 C = 7906.019189 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.264 6.264 3 C 0.207 3.793 4 C -0.241 4.241 5 C -0.087 4.087 6 C -0.090 4.090 7 C 0.617 3.383 8 O -0.525 6.525 9 N -0.601 5.601 10 C 0.099 3.901 11 C -0.154 4.154 12 C 0.182 3.818 13 H 0.076 0.924 14 N -0.739 5.739 15 C -0.249 4.249 16 H 0.092 0.908 17 C 0.010 3.990 18 N -0.930 5.930 19 Si 0.882 3.118 20 H -0.282 1.282 21 H -0.290 1.290 22 H -0.277 1.277 23 C 0.126 3.874 24 H 0.078 0.922 25 C -0.157 4.157 26 O -0.183 6.183 27 H 0.110 0.890 28 H 0.065 0.935 29 H 0.065 0.935 30 H 0.162 0.838 31 H 0.167 0.833 32 H 0.067 0.933 33 H 0.074 0.926 34 H 0.082 0.918 35 H 0.075 0.925 36 H 0.363 0.637 37 H 0.261 0.739 38 H 0.054 0.946 39 H 0.072 0.928 40 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.349 -19.223 -4.159 23.223 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.178 6.178 3 C 0.110 3.890 4 C -0.261 4.261 5 C -0.108 4.108 6 C -0.140 4.140 7 C 0.406 3.594 8 O -0.404 6.404 9 N -0.333 5.333 10 C -0.024 4.024 11 C -0.195 4.195 12 C 0.071 3.929 13 H 0.094 0.906 14 N -0.381 5.381 15 C -0.378 4.378 16 H 0.110 0.890 17 C -0.186 4.186 18 N -0.577 5.577 19 Si 0.712 3.288 20 H -0.208 1.208 21 H -0.216 1.216 22 H -0.203 1.203 23 C 0.022 3.978 24 H 0.096 0.904 25 C -0.215 4.215 26 O -0.083 6.083 27 H 0.128 0.872 28 H 0.084 0.916 29 H 0.084 0.916 30 H 0.180 0.820 31 H 0.184 0.816 32 H 0.086 0.914 33 H 0.092 0.908 34 H 0.100 0.900 35 H 0.094 0.906 36 H 0.197 0.803 37 H 0.071 0.929 38 H 0.073 0.927 39 H 0.091 0.909 40 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 12.388 -18.861 -4.229 22.958 hybrid contribution 0.395 0.347 1.052 1.176 sum 12.783 -18.514 -3.177 22.722 Atomic orbital electron populations 1.23198 0.76450 1.05004 1.02940 1.86396 1.23269 1.18908 1.89193 1.20878 0.89658 0.78485 0.99937 1.20754 0.92075 0.96850 1.16429 1.21953 0.97755 0.92489 0.98566 1.21971 0.86883 0.87271 1.17880 1.15986 0.82101 0.83883 0.77461 1.90885 1.43564 1.53705 1.52263 1.48423 1.04833 1.08792 1.71286 1.22495 0.84771 0.94140 1.00977 1.23554 0.97189 0.97386 1.01420 1.21232 0.88617 0.87813 0.95271 0.90631 1.42704 1.13573 1.41945 1.39864 1.19013 0.87584 1.15056 1.16195 0.88983 1.24652 0.96116 0.98669 0.99203 1.69695 1.15494 1.31011 1.41493 0.86598 0.80444 0.79469 0.82302 1.20848 1.21619 1.20292 1.21971 0.96517 0.79978 0.99304 0.90398 1.22080 1.01869 1.01057 0.96483 1.84129 1.37375 1.14093 1.72694 0.87160 0.91623 0.91635 0.82038 0.81575 0.91437 0.90789 0.89957 0.90644 0.80330 0.92909 0.92663 0.90868 0.91729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.11 10.74 101.05 1.09 1.20 16 2 O -0.26 -2.44 10.55 -41.05 -0.43 -2.88 16 3 C 0.21 2.25 7.86 29.96 0.24 2.48 16 4 C -0.24 -2.47 10.89 -39.72 -0.43 -2.90 16 5 C -0.09 -1.01 10.66 -39.11 -0.42 -1.42 16 6 C -0.09 -1.21 6.96 -36.57 -0.25 -1.47 16 7 C 0.62 9.80 7.60 -13.09 -0.10 9.70 16 8 O -0.52 -9.55 15.90 5.13 0.08 -9.47 16 9 N -0.60 -9.26 3.07 -164.74 -0.51 -9.76 16 10 C 0.10 1.32 6.17 -2.53 -0.02 1.31 16 11 C -0.15 -2.42 6.76 -24.58 -0.17 -2.59 16 12 C 0.18 3.29 3.11 -66.10 -0.21 3.09 16 13 H 0.08 1.38 7.84 -51.93 -0.41 0.98 16 14 N -0.74 -16.62 5.05 -51.65 -0.26 -16.89 16 15 C -0.25 -6.68 10.46 -15.06 -0.16 -6.83 16 16 H 0.09 2.63 8.06 -52.49 -0.42 2.20 16 17 C 0.01 0.28 5.50 -17.43 -0.10 0.19 16 18 N -0.93 -28.37 13.97 55.49 0.78 -27.59 16 19 Si 0.88 21.63 27.73 -169.99 -4.71 16.91 16 20 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 21 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 22 H -0.28 -6.44 6.52 56.52 0.37 -6.08 16 23 C 0.13 2.10 3.20 -66.96 -0.21 1.89 16 24 H 0.08 1.41 7.68 -51.93 -0.40 1.01 16 25 C -0.16 -2.45 9.11 37.16 0.34 -2.12 16 26 O -0.18 -2.21 7.33 -19.26 -0.14 -2.35 16 27 H 0.11 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 30 H 0.16 1.25 8.06 -52.49 -0.42 0.83 16 31 H 0.17 1.69 8.06 -52.49 -0.42 1.26 16 32 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.07 0.91 6.20 -51.93 -0.32 0.59 16 34 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 35 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 36 H 0.36 8.20 5.36 -40.82 -0.22 7.99 16 37 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 38 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 39 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 40 H 0.06 1.04 6.87 -51.93 -0.36 0.68 16 LS Contribution 334.93 15.07 5.05 5.05 Total: -1.00 -31.88 334.93 -6.07 -37.96 By element: Atomic # 1 Polarization: 12.02 SS G_CDS: -5.52 Total: 6.50 kcal Atomic # 6 Polarization: 2.92 SS G_CDS: -0.40 Total: 2.52 kcal Atomic # 7 Polarization: -54.25 SS G_CDS: 0.01 Total: -54.24 kcal Atomic # 8 Polarization: -14.20 SS G_CDS: -0.49 Total: -14.69 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -4.71 Total: 16.91 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -31.88 -6.07 -37.96 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000987246582.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.573 kcal (2) G-P(sol) polarization free energy of solvation -31.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.074 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.956 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.384 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds