Wall clock time and date at job start Tue Mar 31 2020 07:34:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35374 * 116.99780 * 2 1 4 4 C 1.36101 * 125.57620 * 180.02562 * 3 2 1 5 5 C 1.39908 * 107.17243 * 180.02562 * 4 3 2 6 6 C 1.37825 * 106.68135 * 359.97438 * 5 4 3 7 7 C 1.46122 * 126.03161 * 179.97438 * 6 5 4 8 8 O 1.21771 * 120.00289 * 0.02562 * 7 6 5 9 9 N 1.34784 * 120.00049 * 180.02562 * 7 6 5 10 10 C 1.47426 * 125.64612 * 0.02562 * 9 7 6 11 11 C 1.54905 * 104.83014 * 155.83616 * 10 9 7 12 12 C 1.55163 * 101.58311 * 37.00920 * 11 10 9 13 13 H 1.09002 * 110.71796 * 83.03924 * 12 11 10 14 14 N 1.46500 * 110.72135 * 206.13380 * 12 11 10 15 15 C 1.36936 * 120.00116 * 273.54817 * 14 12 11 16 16 H 1.08002 * 120.00042 * 359.97438 * 15 14 12 17 17 C 1.38811 * 119.99857 * 179.97438 * 15 14 12 18 18 N 1.31616 * 119.99556 * 179.97438 * 17 15 14 19 19 Si 1.86791 * 120.00091 * 359.97438 * 17 15 14 20 20 H 1.48503 * 109.47443 * 90.00106 * 19 17 15 21 21 H 1.48505 * 109.47081 * 209.99832 * 19 17 15 22 22 H 1.48503 * 109.47292 * 329.99987 * 19 17 15 23 23 C 1.47019 * 125.64840 * 179.71914 * 9 7 6 24 24 H 1.09001 * 109.88272 * 300.51553 * 23 9 7 25 25 C 1.53008 * 109.88077 * 61.67759 * 23 9 7 26 26 O 1.34009 * 125.58107 * 0.26974 * 3 2 1 27 27 H 1.09002 * 109.46732 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47285 * 299.99707 * 1 2 3 29 29 H 1.08995 * 109.47120 * 59.99771 * 1 2 3 30 30 H 1.07998 * 126.41139 * 359.97438 * 4 3 2 31 31 H 1.08000 * 126.65353 * 180.02562 * 5 4 3 32 32 H 1.09004 * 110.36773 * 274.67496 * 10 9 7 33 33 H 1.08996 * 110.36616 * 36.99677 * 10 9 7 34 34 H 1.09001 * 111.00537 * 155.08297 * 11 10 9 35 35 H 1.09000 * 111.00733 * 278.93858 * 11 10 9 36 36 H 0.97006 * 119.99835 * 93.54403 * 14 12 11 37 37 H 0.97005 * 119.99637 * 180.02562 * 18 17 15 38 38 H 1.09002 * 109.47004 * 58.54897 * 25 23 9 39 39 H 1.09005 * 109.46674 * 178.54695 * 25 23 9 40 40 H 1.08993 * 109.46984 * 298.54378 * 25 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0435 1.2062 0.0000 4 6 3.3893 1.4092 -0.0005 5 6 3.5984 2.7926 0.0003 6 6 2.3521 3.3811 0.0007 7 6 2.0794 4.8166 0.0020 8 8 3.0017 5.6116 0.0025 9 7 0.8068 5.2609 0.0028 10 6 -0.3992 4.4130 0.0029 11 6 -1.5091 5.3023 0.6167 12 6 -1.1512 6.6946 0.0329 13 1 -1.5565 6.8069 -0.9727 14 7 -1.6373 7.7642 0.9081 15 6 -2.9178 8.2303 0.7733 16 1 -3.5692 7.8098 0.0215 17 6 -3.3785 9.2434 1.6029 18 7 -4.6091 9.6918 1.4729 19 14 -2.2521 9.9703 2.9036 20 1 -1.5079 11.1194 2.3279 21 1 -3.0633 10.4342 4.0577 22 1 -1.2894 8.9354 3.3592 23 6 0.3916 6.6712 0.0100 24 1 0.7850 7.1689 0.8964 25 6 0.9012 7.3701 -1.2521 26 8 1.4264 2.3957 0.0051 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 4.1528 0.6454 -0.0006 31 1 4.5514 3.3006 -0.0002 32 1 -0.6621 4.1271 -1.0156 33 1 -0.2399 3.5269 0.6173 34 1 -2.4960 4.9810 0.2838 35 1 -1.4482 5.3077 1.7050 36 1 -1.0521 8.1422 1.5831 37 1 -4.9310 10.4000 2.0524 38 1 0.5081 6.8620 -2.1327 39 1 0.5680 8.4080 -1.2523 40 1 1.9906 7.3383 -1.2703 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000987246582.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:34:43 Heat of formation + Delta-G solvation = -52.207251 kcal Electronic energy + Delta-G solvation = -24007.359006 eV Core-core repulsion = 20403.368685 eV Total energy + Delta-G solvation = -3603.990321 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -43.83246 -41.22064 -39.56191 -38.87569 -36.10012 -34.31260 -33.64041 -32.47198 -31.58624 -30.23680 -28.08755 -26.95481 -24.95323 -24.43948 -23.02570 -22.80006 -21.77216 -20.84588 -19.70378 -19.42864 -18.42458 -18.17639 -17.62120 -16.68885 -16.43602 -16.25286 -15.96840 -15.82770 -15.23044 -14.83163 -14.66135 -14.46617 -14.30315 -14.10889 -13.97867 -13.81840 -13.46727 -13.34428 -13.04483 -13.00631 -12.72175 -12.59848 -12.49887 -12.16815 -12.09416 -11.82498 -11.63305 -11.33556 -11.10440 -10.97709 -9.89593 -9.34984 -9.13553 -8.02840 -5.37250 -0.06402 1.09344 1.30141 1.38844 1.40299 1.46629 1.76325 2.05197 2.21852 2.47432 3.26058 3.39947 3.48431 3.67429 3.74954 3.89807 4.08680 4.23249 4.24317 4.28713 4.29438 4.31649 4.40452 4.53651 4.62328 4.67782 4.70063 4.84152 4.84874 4.97223 5.13552 5.16126 5.21714 5.26261 5.33918 5.49367 5.76638 6.07833 6.20516 6.33352 6.88126 7.04745 7.79139 7.97224 9.18009 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.022961 B = 0.003873 C = 0.003541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1219.148962 B = 7228.227297 C = 7906.019189 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.009 3.991 2 O -0.266 6.266 3 C 0.213 3.787 4 C -0.242 4.242 5 C -0.074 4.074 6 C -0.122 4.122 7 C 0.616 3.384 8 O -0.557 6.557 9 N -0.604 5.604 10 C 0.110 3.890 11 C -0.147 4.147 12 C 0.175 3.825 13 H 0.075 0.925 14 N -0.743 5.743 15 C -0.226 4.226 16 H 0.067 0.933 17 C -0.055 4.055 18 N -0.979 5.979 19 Si 0.945 3.055 20 H -0.280 1.280 21 H -0.296 1.296 22 H -0.258 1.258 23 C 0.131 3.869 24 H 0.063 0.937 25 C -0.149 4.149 26 O -0.186 6.186 27 H 0.138 0.862 28 H 0.066 0.934 29 H 0.069 0.931 30 H 0.188 0.812 31 H 0.177 0.823 32 H 0.087 0.913 33 H 0.089 0.911 34 H 0.089 0.911 35 H 0.064 0.936 36 H 0.364 0.636 37 H 0.258 0.742 38 H 0.066 0.934 39 H 0.068 0.932 40 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.872 -21.641 -4.178 26.042 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 O -0.180 6.180 3 C 0.115 3.885 4 C -0.262 4.262 5 C -0.095 4.095 6 C -0.172 4.172 7 C 0.407 3.593 8 O -0.439 6.439 9 N -0.336 5.336 10 C -0.013 4.013 11 C -0.187 4.187 12 C 0.066 3.934 13 H 0.093 0.907 14 N -0.386 5.386 15 C -0.357 4.357 16 H 0.085 0.915 17 C -0.247 4.247 18 N -0.630 5.630 19 Si 0.773 3.227 20 H -0.206 1.206 21 H -0.223 1.223 22 H -0.182 1.182 23 C 0.027 3.973 24 H 0.081 0.919 25 C -0.207 4.207 26 O -0.086 6.086 27 H 0.156 0.844 28 H 0.085 0.915 29 H 0.087 0.913 30 H 0.205 0.795 31 H 0.194 0.806 32 H 0.105 0.895 33 H 0.108 0.892 34 H 0.107 0.893 35 H 0.083 0.917 36 H 0.197 0.803 37 H 0.067 0.933 38 H 0.085 0.915 39 H 0.087 0.913 40 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 13.942 -21.342 -4.266 25.847 hybrid contribution -0.088 0.897 0.972 1.325 sum 13.853 -20.445 -3.295 24.916 Atomic orbital electron populations 1.23503 0.74754 1.07006 1.03157 1.86424 1.24985 1.17834 1.88710 1.21202 0.90151 0.78547 0.98550 1.21077 0.92545 0.96713 1.15830 1.22229 0.97585 0.93211 0.96435 1.21537 0.87776 0.86501 1.21366 1.16228 0.81590 0.84820 0.76669 1.90857 1.44321 1.54903 1.53831 1.48434 1.05461 1.08255 1.71430 1.22509 0.82895 0.93655 1.02192 1.23387 0.98553 0.96049 1.00726 1.21400 0.89662 0.87790 0.94566 0.90680 1.42685 1.12104 1.43105 1.40689 1.18982 0.88675 1.13708 1.14297 0.91455 1.25354 0.97512 0.99892 1.01967 1.69852 1.17660 1.32297 1.43153 0.85569 0.78746 0.79000 0.79406 1.20609 1.22304 1.18248 1.21738 0.95186 0.81169 0.99182 0.91930 1.21999 1.01447 1.00804 0.96441 1.84065 1.37258 1.14288 1.73038 0.84403 0.91550 0.91251 0.79517 0.80569 0.89483 0.89250 0.89269 0.91740 0.80256 0.93325 0.91512 0.91322 0.92247 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.09 10.74 113.37 1.22 1.30 16 2 O -0.27 -4.11 10.55 -64.45 -0.68 -4.79 16 3 C 0.21 4.02 7.86 67.32 0.53 4.55 16 4 C -0.24 -4.23 10.89 22.18 0.24 -3.99 16 5 C -0.07 -1.56 10.66 22.58 0.24 -1.32 16 6 C -0.12 -3.08 6.96 24.22 0.17 -2.92 16 7 C 0.62 18.93 7.60 86.29 0.66 19.58 16 8 O -0.56 -20.06 15.90 -4.58 -0.07 -20.13 16 9 N -0.60 -17.82 3.07 -793.30 -2.43 -20.25 16 10 C 0.11 2.69 6.17 86.85 0.54 3.22 16 11 C -0.15 -4.39 6.76 31.99 0.22 -4.18 16 12 C 0.18 6.21 3.11 46.18 0.14 6.35 16 13 H 0.08 2.69 7.84 -2.39 -0.02 2.67 16 14 N -0.74 -33.10 5.05 -317.33 -1.60 -34.70 16 15 C -0.23 -12.21 10.46 84.03 0.88 -11.33 16 16 H 0.07 3.92 8.06 -2.91 -0.02 3.90 16 17 C -0.06 -3.16 5.50 84.86 0.47 -2.69 16 18 N -0.98 -61.12 13.97 21.65 0.30 -60.82 16 19 Si 0.94 44.93 27.73 68.60 1.90 46.84 16 20 H -0.28 -13.11 7.11 99.48 0.71 -12.41 16 21 H -0.30 -14.32 7.11 99.48 0.71 -13.61 16 22 H -0.26 -11.27 6.52 99.48 0.65 -10.62 16 23 C 0.13 4.29 3.20 45.34 0.15 4.44 16 24 H 0.06 2.25 7.68 -2.39 -0.02 2.23 16 25 C -0.15 -4.55 9.11 71.98 0.66 -3.90 16 26 O -0.19 -4.05 7.33 13.51 0.10 -3.95 16 27 H 0.14 0.51 8.14 -2.39 -0.02 0.49 16 28 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 29 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 30 H 0.19 2.21 8.06 -2.91 -0.02 2.19 16 31 H 0.18 3.23 8.06 -2.91 -0.02 3.21 16 32 H 0.09 1.84 8.14 -2.38 -0.02 1.82 16 33 H 0.09 1.97 6.20 -2.39 -0.01 1.95 16 34 H 0.09 2.55 8.14 -2.39 -0.02 2.53 16 35 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 36 H 0.36 16.09 5.36 -92.70 -0.50 15.60 16 37 H 0.26 15.42 8.31 -92.70 -0.77 14.65 16 38 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 39 H 0.07 2.13 8.14 -2.38 -0.02 2.11 16 40 H 0.06 1.89 6.87 -2.39 -0.02 1.87 16 Total: -1.00 -69.06 334.93 4.11 -64.95 By element: Atomic # 1 Polarization: 23.22 SS G_CDS: 0.50 Total: 23.72 kcal Atomic # 6 Polarization: 3.03 SS G_CDS: 6.09 Total: 9.13 kcal Atomic # 7 Polarization: -112.04 SS G_CDS: -3.73 Total: -115.77 kcal Atomic # 8 Polarization: -28.21 SS G_CDS: -0.65 Total: -28.86 kcal Atomic # 14 Polarization: 44.93 SS G_CDS: 1.90 Total: 46.84 kcal Total: -69.06 4.11 -64.95 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000987246582.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.739 kcal (2) G-P(sol) polarization free energy of solvation -69.058 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.319 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.946 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds