Wall clock time and date at job start Tue Mar 31 2020 07:34:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35368 * 117.00337 * 2 1 4 4 C 1.36090 * 125.58335 * 180.02562 * 3 2 1 5 5 C 1.39911 * 107.18159 * 180.02562 * 4 3 2 6 6 C 1.37828 * 106.67280 * 359.97438 * 5 4 3 7 7 C 1.46131 * 126.03044 * 180.02562 * 6 5 4 8 8 O 1.21774 * 119.99890 * 359.97438 * 7 6 5 9 9 N 1.34769 * 120.00087 * 179.97438 * 7 6 5 10 10 C 1.46503 * 119.99872 * 179.97438 * 9 7 6 11 11 H 1.09001 * 110.78186 * 328.24101 * 10 9 7 12 12 C 1.55161 * 110.71771 * 91.48037 * 10 9 7 13 13 C 1.54911 * 101.58121 * 153.86490 * 12 10 9 14 14 N 1.47427 * 104.83263 * 322.99141 * 13 12 10 15 15 C 1.36939 * 125.64590 * 204.16958 * 14 13 12 16 16 H 1.07999 * 119.99598 * 161.45689 * 15 14 13 17 17 C 1.38807 * 120.00201 * 341.44398 * 15 14 13 18 18 N 1.31619 * 120.00244 * 157.62938 * 17 15 14 19 19 Si 1.86806 * 119.99966 * 337.62860 * 17 15 14 20 20 H 1.48497 * 109.47000 * 84.53743 * 19 17 15 21 21 H 1.48500 * 109.47414 * 204.54010 * 19 17 15 22 22 H 1.48499 * 109.47120 * 324.53683 * 19 17 15 23 23 C 1.47019 * 108.70392 * 24.12607 * 14 13 12 24 24 H 1.09000 * 109.88375 * 239.36955 * 23 14 13 25 25 C 1.52998 * 109.88443 * 118.35885 * 23 14 13 26 26 O 1.34017 * 125.57889 * 0.31785 * 3 2 1 27 27 H 1.08997 * 109.47649 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47333 * 299.99660 * 1 2 3 29 29 H 1.09008 * 109.47181 * 59.99691 * 1 2 3 30 30 H 1.08002 * 126.40793 * 0.02562 * 4 3 2 31 31 H 1.07998 * 126.66049 * 179.97438 * 5 4 3 32 32 H 0.96998 * 120.00580 * 359.97438 * 9 7 6 33 33 H 1.08996 * 111.00629 * 35.78880 * 12 10 9 34 34 H 1.08998 * 111.03539 * 271.95271 * 12 10 9 35 35 H 1.08999 * 110.37163 * 204.14908 * 13 12 10 36 36 H 1.09003 * 110.36773 * 81.82763 * 13 12 10 37 37 H 0.96996 * 120.00123 * 180.02562 * 18 17 15 38 38 H 1.09006 * 109.46791 * 61.45262 * 25 23 14 39 39 H 1.09002 * 109.47241 * 301.46048 * 25 23 14 40 40 H 1.08997 * 109.47535 * 181.45036 * 25 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0436 1.2061 0.0000 4 6 3.3892 1.4091 -0.0005 5 6 3.5985 2.7925 0.0003 6 6 2.3522 3.3810 0.0007 7 6 2.0794 4.8166 0.0010 8 8 3.0019 5.6116 0.0014 9 7 0.8071 5.2608 0.0008 10 6 0.5337 6.7001 0.0017 11 1 1.3126 7.2414 0.5387 12 6 0.3950 7.2334 -1.4488 13 6 -0.5151 8.4695 -1.2400 14 7 -1.4637 8.0660 -0.1861 15 6 -2.7074 8.6022 0.0160 16 1 -3.4396 8.0631 0.5988 17 6 -3.0270 9.8386 -0.5279 18 7 -4.2866 10.1640 -0.7278 19 14 -1.6693 11.0409 -0.9761 20 1 -1.1564 10.7247 -2.3333 21 1 -2.2083 12.4246 -0.9605 22 1 -0.5640 10.9292 0.0093 23 6 -0.8537 6.9921 0.6114 24 1 -1.4760 6.0983 0.5673 25 6 -0.6983 7.4465 2.0640 26 8 1.4265 2.3957 0.0060 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 4.1528 0.6453 -0.0013 31 1 4.5515 3.3005 0.0006 32 1 0.0722 4.6277 0.0001 33 1 -0.0876 6.4970 -2.0913 34 1 1.3643 7.5256 -1.8526 35 1 -1.0489 8.7074 -2.1601 36 1 0.0759 9.3245 -0.9114 37 1 -4.5098 11.0279 -1.1082 38 1 -1.6807 7.6634 2.4838 39 1 -0.0817 8.3446 2.0998 40 1 -0.2223 6.6555 2.6433 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001088938064.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:34:35 Heat of formation + Delta-G solvation = -25.993445 kcal Electronic energy + Delta-G solvation = -23737.743636 eV Core-core repulsion = 20134.890030 eV Total energy + Delta-G solvation = -3602.853605 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.99431 -39.79246 -38.84924 -37.82895 -34.34326 -33.40589 -32.17847 -30.73918 -30.18534 -29.13736 -27.52067 -25.10312 -23.97008 -22.91641 -22.23766 -21.12046 -20.44833 -19.83234 -19.04724 -17.69646 -17.36036 -16.95169 -16.23106 -15.72352 -15.44787 -15.08613 -14.63939 -14.46417 -14.23673 -13.51006 -13.43807 -13.28478 -13.16500 -13.00687 -12.80457 -12.55563 -12.16068 -11.95954 -11.88550 -11.59827 -11.23045 -10.95831 -10.80430 -10.52213 -10.32895 -10.29028 -10.05754 -10.00752 -9.46001 -8.97594 -8.70059 -8.32852 -7.11194 -5.97080 -3.28329 0.85303 1.92065 2.10505 2.77516 3.12153 3.19445 3.34896 3.48976 3.51085 4.50805 4.53476 4.61611 4.69909 4.70921 4.93131 4.97732 5.10721 5.19203 5.19726 5.30302 5.37200 5.55087 5.57399 5.81523 5.89933 6.00864 6.02410 6.13577 6.20643 6.23961 6.37338 6.41212 6.59859 6.70763 6.74656 6.79263 6.94496 7.48604 7.66883 8.08773 8.28437 8.79608 9.65905 10.12981 11.18784 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.026102 B = 0.003590 C = 0.003345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1072.469038 B = 7798.502697 C = 8368.806036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.263 6.263 3 C 0.212 3.788 4 C -0.242 4.242 5 C -0.085 4.085 6 C -0.096 4.096 7 C 0.606 3.394 8 O -0.523 6.523 9 N -0.705 5.705 10 C 0.133 3.867 11 H 0.102 0.898 12 C -0.141 4.141 13 C 0.111 3.889 14 N -0.601 5.601 15 C -0.239 4.239 16 H 0.092 0.908 17 C 0.024 3.976 18 N -0.908 5.908 19 Si 0.881 3.119 20 H -0.285 1.285 21 H -0.302 1.302 22 H -0.275 1.275 23 C 0.155 3.845 24 H 0.046 0.954 25 C -0.156 4.156 26 O -0.188 6.188 27 H 0.110 0.890 28 H 0.065 0.935 29 H 0.065 0.935 30 H 0.163 0.837 31 H 0.168 0.832 32 H 0.404 0.596 33 H 0.073 0.927 34 H 0.071 0.929 35 H 0.063 0.937 36 H 0.029 0.971 37 H 0.263 0.737 38 H 0.062 0.938 39 H 0.052 0.948 40 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.237 -19.550 1.380 23.105 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.177 6.177 3 C 0.115 3.885 4 C -0.261 4.261 5 C -0.105 4.105 6 C -0.147 4.147 7 C 0.393 3.607 8 O -0.402 6.402 9 N -0.354 5.354 10 C 0.028 3.972 11 H 0.120 0.880 12 C -0.180 4.180 13 C -0.014 4.014 14 N -0.327 5.327 15 C -0.366 4.366 16 H 0.110 0.890 17 C -0.175 4.175 18 N -0.552 5.552 19 Si 0.711 3.289 20 H -0.211 1.211 21 H -0.230 1.230 22 H -0.201 1.201 23 C 0.048 3.952 24 H 0.064 0.936 25 C -0.215 4.215 26 O -0.089 6.089 27 H 0.129 0.871 28 H 0.084 0.916 29 H 0.084 0.916 30 H 0.181 0.819 31 H 0.185 0.815 32 H 0.238 0.762 33 H 0.091 0.909 34 H 0.090 0.910 35 H 0.081 0.919 36 H 0.046 0.954 37 H 0.073 0.927 38 H 0.081 0.919 39 H 0.071 0.929 40 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 12.404 -18.925 1.352 22.668 hybrid contribution 0.088 0.427 -0.232 0.494 sum 12.492 -18.498 1.120 22.349 Atomic orbital electron populations 1.23200 0.76376 1.05053 1.02979 1.86400 1.23332 1.18829 1.89157 1.20805 0.89549 0.78239 0.99857 1.20771 0.92060 0.96926 1.16378 1.21985 0.97870 0.92481 0.98184 1.22048 0.86995 0.87386 1.18229 1.16328 0.83683 0.83723 0.76994 1.90906 1.44273 1.53572 1.51408 1.45928 1.06999 1.08872 1.73636 1.22230 0.98537 0.78993 0.97412 0.88024 1.23153 1.00008 0.98897 0.95969 1.21969 0.91445 0.94525 0.93467 1.44816 1.15434 1.41914 1.30542 1.18570 0.85446 1.00338 1.32275 0.88992 1.24978 0.95762 0.97292 0.99456 1.69831 1.16326 1.22742 1.46265 0.87013 0.82521 0.80900 0.78465 1.21149 1.23041 1.20104 1.21081 0.90161 0.93003 0.90947 0.93623 1.22212 1.02122 1.00211 0.96995 1.83968 1.37778 1.14268 1.72855 0.87124 0.91594 0.91593 0.81941 0.81489 0.76152 0.90870 0.91040 0.91854 0.95365 0.92666 0.91903 0.92935 0.94036 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.11 10.74 101.05 1.09 1.19 16 2 O -0.26 -2.34 10.55 -41.03 -0.43 -2.77 16 3 C 0.21 2.20 7.86 29.96 0.24 2.44 16 4 C -0.24 -2.35 10.89 -39.73 -0.43 -2.78 16 5 C -0.08 -0.93 10.66 -39.11 -0.42 -1.34 16 6 C -0.10 -1.21 7.15 -36.57 -0.26 -1.47 16 7 C 0.61 8.92 7.77 -13.10 -0.10 8.82 16 8 O -0.52 -9.15 16.52 5.12 0.08 -9.06 16 9 N -0.70 -9.95 5.17 -53.49 -0.28 -10.23 16 10 C 0.13 2.22 2.84 -66.09 -0.19 2.03 16 11 H 0.10 1.80 7.26 -51.93 -0.38 1.42 16 12 C -0.14 -2.46 6.77 -24.58 -0.17 -2.63 16 13 C 0.11 2.40 4.69 -2.53 -0.01 2.39 16 14 N -0.60 -14.03 2.94 -162.57 -0.48 -14.51 16 15 C -0.24 -6.58 10.17 -15.06 -0.15 -6.73 16 16 H 0.09 2.67 8.06 -52.49 -0.42 2.25 16 17 C 0.02 0.68 5.43 -17.43 -0.09 0.59 16 18 N -0.91 -27.65 13.97 55.49 0.78 -26.87 16 19 Si 0.88 22.46 24.27 -169.99 -4.13 18.33 16 20 H -0.28 -6.99 6.49 56.52 0.37 -6.62 16 21 H -0.30 -7.84 7.11 56.52 0.40 -7.44 16 22 H -0.28 -6.95 6.66 56.52 0.38 -6.57 16 23 C 0.16 2.93 3.48 -66.95 -0.23 2.70 16 24 H 0.05 0.83 7.72 -51.93 -0.40 0.43 16 25 C -0.16 -2.80 9.14 37.16 0.34 -2.46 16 26 O -0.19 -2.15 9.88 -19.26 -0.19 -2.34 16 27 H 0.11 0.37 8.14 -51.93 -0.42 -0.06 16 28 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.07 0.38 8.14 -51.92 -0.42 -0.04 16 30 H 0.16 1.19 8.06 -52.49 -0.42 0.76 16 31 H 0.17 1.60 8.06 -52.49 -0.42 1.18 16 32 H 0.40 4.95 8.12 -40.82 -0.33 4.62 16 33 H 0.07 1.22 8.14 -51.93 -0.42 0.79 16 34 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 35 H 0.06 1.45 6.64 -51.93 -0.34 1.11 16 36 H 0.03 0.64 5.58 -51.93 -0.29 0.35 16 37 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 38 H 0.06 1.20 8.03 -51.93 -0.42 0.78 16 39 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 40 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 LS Contribution 333.96 15.07 5.03 5.03 Total: -1.00 -32.36 333.96 -5.59 -37.96 By element: Atomic # 1 Polarization: 7.31 SS G_CDS: -5.58 Total: 1.73 kcal Atomic # 6 Polarization: 3.13 SS G_CDS: -0.40 Total: 2.73 kcal Atomic # 7 Polarization: -51.63 SS G_CDS: 0.02 Total: -51.61 kcal Atomic # 8 Polarization: -13.64 SS G_CDS: -0.54 Total: -14.18 kcal Atomic # 14 Polarization: 22.46 SS G_CDS: -4.13 Total: 18.33 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -32.36 -5.59 -37.96 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088938064.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.963 kcal (2) G-P(sol) polarization free energy of solvation -32.363 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.400 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.956 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds