Wall clock time and date at job start Tue Mar 31 2020 07:34:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35368 * 117.00337 * 2 1 4 4 C 1.36090 * 125.58335 * 180.02562 * 3 2 1 5 5 C 1.39911 * 107.18159 * 180.02562 * 4 3 2 6 6 C 1.37828 * 106.67280 * 359.97438 * 5 4 3 7 7 C 1.46131 * 126.03044 * 180.02562 * 6 5 4 8 8 O 1.21774 * 119.99890 * 359.97438 * 7 6 5 9 9 N 1.34769 * 120.00087 * 179.97438 * 7 6 5 10 10 C 1.46503 * 119.99872 * 179.97438 * 9 7 6 11 11 H 1.09001 * 110.78186 * 328.24101 * 10 9 7 12 12 C 1.55161 * 110.71771 * 91.48037 * 10 9 7 13 13 C 1.54911 * 101.58121 * 153.86490 * 12 10 9 14 14 N 1.47427 * 104.83263 * 322.99141 * 13 12 10 15 15 C 1.36939 * 125.64590 * 204.16958 * 14 13 12 16 16 H 1.07999 * 119.99598 * 161.45689 * 15 14 13 17 17 C 1.38807 * 120.00201 * 341.44398 * 15 14 13 18 18 N 1.31619 * 120.00244 * 157.62938 * 17 15 14 19 19 Si 1.86806 * 119.99966 * 337.62860 * 17 15 14 20 20 H 1.48497 * 109.47000 * 84.53743 * 19 17 15 21 21 H 1.48500 * 109.47414 * 204.54010 * 19 17 15 22 22 H 1.48499 * 109.47120 * 324.53683 * 19 17 15 23 23 C 1.47019 * 108.70392 * 24.12607 * 14 13 12 24 24 H 1.09000 * 109.88375 * 239.36955 * 23 14 13 25 25 C 1.52998 * 109.88443 * 118.35885 * 23 14 13 26 26 O 1.34017 * 125.57889 * 0.31785 * 3 2 1 27 27 H 1.08997 * 109.47649 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47333 * 299.99660 * 1 2 3 29 29 H 1.09008 * 109.47181 * 59.99691 * 1 2 3 30 30 H 1.08002 * 126.40793 * 0.02562 * 4 3 2 31 31 H 1.07998 * 126.66049 * 179.97438 * 5 4 3 32 32 H 0.96998 * 120.00580 * 359.97438 * 9 7 6 33 33 H 1.08996 * 111.00629 * 35.78880 * 12 10 9 34 34 H 1.08998 * 111.03539 * 271.95271 * 12 10 9 35 35 H 1.08999 * 110.37163 * 204.14908 * 13 12 10 36 36 H 1.09003 * 110.36773 * 81.82763 * 13 12 10 37 37 H 0.96996 * 120.00123 * 180.02562 * 18 17 15 38 38 H 1.09006 * 109.46791 * 61.45262 * 25 23 14 39 39 H 1.09002 * 109.47241 * 301.46048 * 25 23 14 40 40 H 1.08997 * 109.47535 * 181.45036 * 25 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0436 1.2061 0.0000 4 6 3.3892 1.4091 -0.0005 5 6 3.5985 2.7925 0.0003 6 6 2.3522 3.3810 0.0007 7 6 2.0794 4.8166 0.0010 8 8 3.0019 5.6116 0.0014 9 7 0.8071 5.2608 0.0008 10 6 0.5337 6.7001 0.0017 11 1 1.3126 7.2414 0.5387 12 6 0.3950 7.2334 -1.4488 13 6 -0.5151 8.4695 -1.2400 14 7 -1.4637 8.0660 -0.1861 15 6 -2.7074 8.6022 0.0160 16 1 -3.4396 8.0631 0.5988 17 6 -3.0270 9.8386 -0.5279 18 7 -4.2866 10.1640 -0.7278 19 14 -1.6693 11.0409 -0.9761 20 1 -1.1564 10.7247 -2.3333 21 1 -2.2083 12.4246 -0.9605 22 1 -0.5640 10.9292 0.0093 23 6 -0.8537 6.9921 0.6114 24 1 -1.4760 6.0983 0.5673 25 6 -0.6983 7.4465 2.0640 26 8 1.4265 2.3957 0.0060 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 4.1528 0.6453 -0.0013 31 1 4.5515 3.3005 0.0006 32 1 0.0722 4.6277 0.0001 33 1 -0.0876 6.4970 -2.0913 34 1 1.3643 7.5256 -1.8526 35 1 -1.0489 8.7074 -2.1601 36 1 0.0759 9.3245 -0.9114 37 1 -4.5098 11.0279 -1.1082 38 1 -1.6807 7.6634 2.4838 39 1 -0.0817 8.3446 2.0998 40 1 -0.2223 6.6555 2.6433 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001088938064.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:34:34 Heat of formation + Delta-G solvation = -48.623981 kcal Electronic energy + Delta-G solvation = -23738.724969 eV Core-core repulsion = 20134.890030 eV Total energy + Delta-G solvation = -3603.834939 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -43.81182 -41.03179 -39.63913 -39.22498 -35.76809 -34.33350 -34.02545 -32.28158 -31.54324 -30.33893 -28.22712 -26.49801 -25.87446 -24.00313 -23.04647 -22.56877 -21.64365 -21.19178 -19.90399 -18.85845 -18.73414 -18.13061 -17.64724 -17.00163 -16.43575 -16.30745 -16.03713 -15.64770 -15.47548 -15.19294 -14.62263 -14.51497 -14.28115 -14.11562 -13.99392 -13.96303 -13.52273 -13.23698 -13.01827 -12.92935 -12.62284 -12.51030 -12.47753 -12.16152 -12.07287 -11.64231 -11.54911 -11.36503 -11.09405 -10.81900 -10.21074 -9.15852 -9.09269 -8.17313 -5.44074 -0.05741 1.11288 1.30875 1.30940 1.40037 1.47444 1.90841 2.07525 2.24512 2.41641 3.03638 3.27966 3.59834 3.72136 3.74434 3.80917 4.09717 4.22565 4.27319 4.27462 4.33984 4.39107 4.50321 4.56104 4.69256 4.71820 4.79069 4.84834 4.87018 4.97270 5.01618 5.13370 5.26034 5.30478 5.38881 5.51680 5.68792 6.05449 6.11108 6.39730 6.74329 6.98058 7.53404 8.08611 9.02291 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.026102 B = 0.003590 C = 0.003345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1072.469038 B = 7798.502697 C = 8368.806036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.010 3.990 2 O -0.266 6.266 3 C 0.214 3.786 4 C -0.242 4.242 5 C -0.074 4.074 6 C -0.124 4.124 7 C 0.611 3.389 8 O -0.555 6.555 9 N -0.697 5.697 10 C 0.148 3.852 11 H 0.097 0.903 12 C -0.128 4.128 13 C 0.105 3.895 14 N -0.617 5.617 15 C -0.222 4.222 16 H 0.066 0.934 17 C -0.033 4.033 18 N -0.955 5.955 19 Si 0.937 3.063 20 H -0.271 1.271 21 H -0.310 1.310 22 H -0.271 1.271 23 C 0.151 3.849 24 H 0.056 0.944 25 C -0.149 4.149 26 O -0.192 6.192 27 H 0.138 0.862 28 H 0.067 0.933 29 H 0.066 0.934 30 H 0.188 0.812 31 H 0.179 0.821 32 H 0.414 0.586 33 H 0.083 0.917 34 H 0.087 0.913 35 H 0.047 0.953 36 H 0.024 0.976 37 H 0.262 0.738 38 H 0.044 0.956 39 H 0.042 0.958 40 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.345 -21.781 1.308 26.113 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 O -0.180 6.180 3 C 0.117 3.883 4 C -0.262 4.262 5 C -0.094 4.094 6 C -0.175 4.175 7 C 0.400 3.600 8 O -0.436 6.436 9 N -0.347 5.347 10 C 0.043 3.957 11 H 0.115 0.885 12 C -0.168 4.168 13 C -0.020 4.020 14 N -0.343 5.343 15 C -0.351 4.351 16 H 0.083 0.917 17 C -0.227 4.227 18 N -0.602 5.602 19 Si 0.766 3.234 20 H -0.196 1.196 21 H -0.239 1.239 22 H -0.197 1.197 23 C 0.045 3.955 24 H 0.074 0.926 25 C -0.209 4.209 26 O -0.093 6.093 27 H 0.156 0.844 28 H 0.086 0.914 29 H 0.085 0.915 30 H 0.205 0.795 31 H 0.196 0.804 32 H 0.250 0.750 33 H 0.102 0.898 34 H 0.106 0.894 35 H 0.065 0.935 36 H 0.042 0.958 37 H 0.071 0.929 38 H 0.063 0.937 39 H 0.061 0.939 40 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 14.539 -21.209 1.285 25.746 hybrid contribution -0.594 0.885 -0.164 1.078 sum 13.945 -20.324 1.121 24.674 Atomic orbital electron populations 1.23486 0.74778 1.06994 1.03106 1.86421 1.24953 1.17900 1.88735 1.21146 0.90073 0.78336 0.98742 1.21099 0.92455 0.96903 1.15731 1.22266 0.97798 0.93118 0.96218 1.21640 0.87765 0.86700 1.21348 1.16460 0.83086 0.84472 0.76024 1.90885 1.45027 1.54719 1.52952 1.45727 1.07503 1.07785 1.73706 1.21869 0.96781 0.80540 0.96512 0.88490 1.23069 0.99809 0.97148 0.96731 1.22023 0.91481 0.96380 0.92151 1.44884 1.14813 1.42398 1.32236 1.18500 0.86721 0.99778 1.30094 0.91651 1.25531 0.97380 0.99002 1.00817 1.69943 1.18207 1.23168 1.48880 0.86095 0.80019 0.78325 0.78948 1.19649 1.23855 1.19682 1.21252 0.91391 0.91814 0.91071 0.92617 1.22121 1.01211 1.00893 0.96625 1.83931 1.37713 1.14468 1.73157 0.84393 0.91419 0.91508 0.79509 0.80395 0.74960 0.89843 0.89430 0.93462 0.95834 0.92923 0.93689 0.93863 0.90891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.09 10.74 113.37 1.22 1.31 16 2 O -0.27 -4.02 10.55 -64.37 -0.68 -4.70 16 3 C 0.21 3.90 7.86 67.32 0.53 4.43 16 4 C -0.24 -4.01 10.89 22.18 0.24 -3.77 16 5 C -0.07 -1.43 10.66 22.58 0.24 -1.19 16 6 C -0.12 -2.88 7.15 24.22 0.17 -2.71 16 7 C 0.61 16.81 7.77 86.29 0.67 17.48 16 8 O -0.55 -18.49 16.52 -4.58 -0.08 -18.57 16 9 N -0.70 -18.18 5.17 -441.34 -2.28 -20.46 16 10 C 0.15 4.67 2.84 46.18 0.13 4.80 16 11 H 0.10 3.23 7.26 -2.39 -0.02 3.21 16 12 C -0.13 -4.21 6.77 31.99 0.22 -3.99 16 13 C 0.10 4.40 4.69 86.86 0.41 4.81 16 14 N -0.62 -28.53 2.94 -668.25 -1.96 -30.50 16 15 C -0.22 -12.42 10.17 84.03 0.85 -11.57 16 16 H 0.07 3.93 8.06 -2.91 -0.02 3.90 16 17 C -0.03 -1.91 5.43 84.86 0.46 -1.45 16 18 N -0.95 -59.78 13.97 21.65 0.30 -59.48 16 19 Si 0.94 46.95 24.27 68.60 1.67 48.61 16 20 H -0.27 -12.79 6.49 99.48 0.65 -12.14 16 21 H -0.31 -15.78 7.11 99.48 0.71 -15.08 16 22 H -0.27 -13.25 6.66 99.48 0.66 -12.59 16 23 C 0.15 5.49 3.48 45.34 0.16 5.65 16 24 H 0.06 1.94 7.72 -2.39 -0.02 1.92 16 25 C -0.15 -5.18 9.14 71.98 0.66 -4.53 16 26 O -0.19 -3.97 9.88 13.50 0.13 -3.83 16 27 H 0.14 0.49 8.14 -2.39 -0.02 0.47 16 28 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 29 H 0.07 0.62 8.14 -2.38 -0.02 0.60 16 30 H 0.19 2.06 8.06 -2.91 -0.02 2.04 16 31 H 0.18 2.98 8.06 -2.91 -0.02 2.95 16 32 H 0.41 9.20 8.12 -92.71 -0.75 8.45 16 33 H 0.08 2.58 8.14 -2.39 -0.02 2.56 16 34 H 0.09 2.64 8.14 -2.39 -0.02 2.62 16 35 H 0.05 2.13 6.64 -2.39 -0.02 2.11 16 36 H 0.02 1.04 5.58 -2.39 -0.01 1.02 16 37 H 0.26 15.65 8.31 -92.71 -0.77 14.88 16 38 H 0.04 1.70 8.03 -2.38 -0.02 1.68 16 39 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 40 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 Total: -1.00 -70.13 333.96 3.26 -66.87 By element: Atomic # 1 Polarization: 12.59 SS G_CDS: 0.20 Total: 12.79 kcal Atomic # 6 Polarization: 3.31 SS G_CDS: 5.96 Total: 9.27 kcal Atomic # 7 Polarization: -106.50 SS G_CDS: -3.94 Total: -110.44 kcal Atomic # 8 Polarization: -26.48 SS G_CDS: -0.62 Total: -27.10 kcal Atomic # 14 Polarization: 46.95 SS G_CDS: 1.67 Total: 48.61 kcal Total: -70.13 3.26 -66.87 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088938064.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.244 kcal (2) G-P(sol) polarization free energy of solvation -70.128 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.884 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.868 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.624 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds