Wall clock time and date at job start Tue Mar 31 2020 07:45:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42892 * 1 3 3 C 1.42900 * 114.00042 * 2 1 4 4 O 1.42894 * 109.47103 * 75.00455 * 3 2 1 5 5 C 1.35972 * 117.00377 * 74.99871 * 4 3 2 6 6 C 1.38720 * 119.99056 * 179.97438 * 5 4 3 7 7 C 1.38094 * 120.01463 * 180.02562 * 6 5 4 8 8 C 1.38836 * 119.98626 * 359.97438 * 7 6 5 9 9 N 1.40157 * 120.01109 * 179.97438 * 8 7 6 10 10 C 1.34777 * 120.00161 * 34.73807 * 9 8 7 11 11 O 1.21583 * 119.99839 * 5.40299 * 10 9 8 12 12 N 1.34777 * 119.99757 * 185.40576 * 10 9 8 13 13 C 1.46498 * 119.99604 * 180.02562 * 12 10 9 14 14 H 1.08992 * 109.47613 * 324.99486 * 13 12 10 15 15 C 1.53004 * 109.47375 * 84.99910 * 13 12 10 16 16 C 1.50706 * 109.46599 * 204.99623 * 13 12 10 17 17 H 1.07998 * 120.00064 * 334.89768 * 16 13 12 18 18 C 1.37874 * 119.99609 * 154.90596 * 16 13 12 19 19 N 1.31513 * 120.00149 * 174.95375 * 18 16 13 20 20 Si 1.86798 * 120.00292 * 354.94523 * 18 16 13 21 21 H 1.48497 * 109.47455 * 275.03534 * 20 18 16 22 22 H 1.48500 * 109.47098 * 35.03239 * 20 18 16 23 23 H 1.48499 * 109.47449 * 155.03225 * 20 18 16 24 24 C 1.38832 * 119.97333 * 0.25576 * 8 7 6 25 25 C 1.38095 * 119.98360 * 359.53542 * 24 8 7 26 26 H 1.09000 * 109.47207 * 299.99525 * 1 2 3 27 27 H 1.08996 * 109.47551 * 59.99614 * 1 2 3 28 28 H 1.09007 * 109.47158 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.46954 * 314.99885 * 3 2 1 30 30 H 1.09006 * 109.46941 * 195.00032 * 3 2 1 31 31 H 1.07999 * 119.98925 * 0.02562 * 6 5 4 32 32 H 1.08005 * 120.00528 * 179.97438 * 7 6 5 33 33 H 0.97004 * 119.99690 * 214.74405 * 9 8 7 34 34 H 0.96999 * 120.00038 * 359.97438 * 12 10 9 35 35 H 1.09004 * 109.46872 * 54.98537 * 15 13 12 36 36 H 1.08996 * 109.47342 * 174.99081 * 15 13 12 37 37 H 1.09003 * 109.46663 * 294.99290 * 15 13 12 38 38 H 0.97004 * 120.00517 * 179.97438 * 19 18 16 39 39 H 1.07996 * 120.00751 * 179.74205 * 24 8 7 40 40 H 1.07998 * 119.99433 * 180.20974 * 25 24 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 8 1.8854 1.8824 1.3013 5 6 2.7192 1.4128 2.2673 6 6 2.6516 1.9296 3.5529 7 6 3.4986 1.4534 4.5342 8 6 4.4174 0.4568 4.2341 9 7 5.2776 -0.0265 5.2295 10 6 4.8493 -0.1178 6.5042 11 8 3.6891 0.1252 6.7745 12 7 5.7072 -0.4783 7.4791 13 6 5.2415 -0.5781 8.8645 14 1 4.4915 0.1903 9.0520 15 6 4.6258 -1.9593 9.0975 16 6 6.4059 -0.3827 9.8011 17 1 7.4094 -0.6033 9.4685 18 6 6.1899 0.0776 11.0827 19 7 7.1916 0.1540 11.9315 20 14 4.4747 0.5929 11.6135 21 1 4.2374 2.0045 11.2184 22 1 3.4697 -0.2807 10.9561 23 1 4.3532 0.4645 13.0879 24 6 4.4879 -0.0566 2.9461 25 6 3.6375 0.4174 1.9668 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3634 -1.0277 0.0005 29 1 1.4941 1.9329 -0.7267 30 1 3.0648 1.2336 -0.2660 31 1 1.9365 2.7045 3.7863 32 1 3.4461 1.8561 5.5350 33 1 6.1813 -0.2952 5.0011 34 1 6.6328 -0.6724 7.2634 35 1 5.3475 -2.7294 8.8248 36 1 4.3604 -2.0661 10.1492 37 1 3.7311 -2.0663 8.4841 38 1 7.0398 0.4782 12.8331 39 1 5.2053 -0.8289 2.7111 40 1 3.6898 0.0157 0.9656 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001119322009.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:45:57 Heat of formation + Delta-G solvation = -84.694147 kcal Electronic energy + Delta-G solvation = -23039.753258 eV Core-core repulsion = 19434.354199 eV Total energy + Delta-G solvation = -3605.399058 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.55746 -39.72883 -38.07569 -36.68465 -35.00482 -33.95238 -32.34386 -31.01143 -30.00052 -28.40495 -27.74326 -25.50030 -25.24497 -22.83452 -22.55543 -20.89230 -19.86997 -18.58397 -18.38169 -17.40916 -17.12941 -16.82846 -16.27348 -15.67842 -15.28418 -14.87211 -14.56172 -14.21325 -14.05878 -13.89556 -13.51063 -13.37389 -13.13530 -12.73135 -12.54949 -12.43101 -12.26733 -11.79120 -11.62989 -11.46569 -11.16181 -10.96247 -10.83213 -10.48850 -10.44892 -9.89597 -9.76768 -9.51666 -9.21376 -8.90542 -8.70532 -8.19598 -7.54543 -6.22702 -4.25757 1.40233 1.46527 3.02294 3.16009 3.29145 3.35424 3.36120 3.42967 3.60831 4.00936 4.33450 4.59520 4.72431 4.77245 4.86473 4.97177 4.99967 5.10445 5.16890 5.34969 5.38159 5.44537 5.70226 5.95816 6.04873 6.29270 6.32062 6.44588 6.51445 6.55150 6.63761 6.69656 6.89373 7.02476 7.12278 7.34122 7.37961 7.48199 7.56284 8.25883 8.64791 8.78190 9.12461 9.39308 10.89100 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.033688 B = 0.002885 C = 0.002828 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 830.957073 B = 9703.096185 C = 9897.594248 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.396 6.396 3 C 0.212 3.788 4 O -0.333 6.333 5 C 0.098 3.902 6 C -0.128 4.128 7 C -0.084 4.084 8 C 0.150 3.850 9 N -0.695 5.695 10 C 0.693 3.307 11 O -0.587 6.587 12 N -0.714 5.714 13 C 0.251 3.749 14 H 0.048 0.952 15 C -0.152 4.152 16 C -0.532 4.532 17 H 0.079 0.921 18 C 0.081 3.919 19 N -0.890 5.890 20 Si 0.872 3.128 21 H -0.273 1.273 22 H -0.257 1.257 23 H -0.286 1.286 24 C -0.118 4.118 25 C -0.174 4.174 26 H 0.050 0.950 27 H 0.043 0.957 28 H 0.087 0.913 29 H 0.102 0.898 30 H 0.101 0.899 31 H 0.130 0.870 32 H 0.143 0.857 33 H 0.403 0.597 34 H 0.392 0.608 35 H 0.045 0.955 36 H 0.055 0.945 37 H 0.029 0.971 38 H 0.268 0.732 39 H 0.126 0.874 40 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.813 1.346 -24.134 25.403 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.315 6.315 3 C 0.098 3.902 4 O -0.250 6.250 5 C 0.054 3.946 6 C -0.147 4.147 7 C -0.105 4.105 8 C 0.054 3.946 9 N -0.343 5.343 10 C 0.394 3.606 11 O -0.465 6.465 12 N -0.365 5.365 13 C 0.148 3.852 14 H 0.066 0.934 15 C -0.211 4.211 16 C -0.570 4.570 17 H 0.097 0.903 18 C -0.123 4.123 19 N -0.527 5.527 20 Si 0.699 3.301 21 H -0.199 1.199 22 H -0.181 1.181 23 H -0.212 1.212 24 C -0.139 4.139 25 C -0.193 4.193 26 H 0.069 0.931 27 H 0.062 0.938 28 H 0.105 0.895 29 H 0.119 0.881 30 H 0.119 0.881 31 H 0.148 0.852 32 H 0.161 0.839 33 H 0.238 0.762 34 H 0.225 0.775 35 H 0.064 0.936 36 H 0.074 0.926 37 H 0.049 0.951 38 H 0.078 0.922 39 H 0.144 0.856 40 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -8.814 1.573 -23.530 25.176 hybrid contribution 0.039 0.046 0.065 0.089 sum -8.775 1.619 -23.465 25.104 Atomic orbital electron populations 1.22817 0.80192 1.03102 1.00528 1.88050 1.21100 1.28695 1.93681 1.24141 0.99672 0.83293 0.83049 1.86212 1.58060 1.60657 1.20052 1.18833 0.91421 0.95515 0.88863 1.20313 1.01821 1.02663 0.89877 1.21069 0.95081 0.94453 0.99882 1.17462 0.94514 0.94699 0.87909 1.42795 1.15969 1.69055 1.06487 1.16186 0.85608 0.78735 0.80116 1.90880 1.16653 1.57267 1.81675 1.45744 1.11809 1.71032 1.07956 1.18980 0.95818 0.93831 0.76539 0.93425 1.22327 0.98727 0.99449 1.00584 1.20991 0.93594 1.46029 0.96384 0.90346 1.24863 0.97066 0.94235 0.96172 1.69878 1.31364 1.45525 1.05906 0.86954 0.85251 0.80215 0.77725 1.19865 1.18127 1.21201 1.20637 1.00918 1.00320 0.92039 1.20960 0.98248 0.99797 1.00338 0.93088 0.93810 0.89462 0.88061 0.88149 0.85232 0.83888 0.76204 0.77532 0.93617 0.92577 0.95142 0.92243 0.85609 0.85112 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 10.89 101.05 1.10 1.32 16 2 O -0.40 -3.80 10.18 -59.04 -0.60 -4.40 16 3 C 0.21 1.69 6.39 101.05 0.65 2.34 16 4 O -0.33 -3.78 10.20 -43.46 -0.44 -4.22 16 5 C 0.10 1.26 6.63 -39.22 -0.26 1.00 16 6 C -0.13 -1.78 9.98 -39.46 -0.39 -2.18 16 7 C -0.08 -1.34 8.65 -39.41 -0.34 -1.68 16 8 C 0.15 2.24 6.25 -83.61 -0.52 1.72 16 9 N -0.69 -10.44 5.35 -14.19 -0.08 -10.52 16 10 C 0.69 13.54 8.26 -86.92 -0.72 12.82 16 11 O -0.59 -13.57 13.79 5.29 0.07 -13.50 16 12 N -0.71 -14.22 5.07 -59.81 -0.30 -14.53 16 13 C 0.25 5.97 2.12 -69.08 -0.15 5.83 16 14 H 0.05 1.24 5.34 -51.93 -0.28 0.96 16 15 C -0.15 -3.38 9.10 37.16 0.34 -3.04 16 16 C -0.53 -14.20 9.06 -34.44 -0.31 -14.52 16 17 H 0.08 2.19 8.02 -52.49 -0.42 1.77 16 18 C 0.08 2.25 5.47 -17.82 -0.10 2.15 16 19 N -0.89 -26.14 13.96 55.43 0.77 -25.37 16 20 Si 0.87 21.42 26.19 -169.99 -4.45 16.97 16 21 H -0.27 -6.73 7.11 56.52 0.40 -6.33 16 22 H -0.26 -6.18 6.14 56.52 0.35 -5.83 16 23 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 24 C -0.12 -1.46 9.96 -39.41 -0.39 -1.85 16 25 C -0.17 -2.07 8.78 -39.45 -0.35 -2.41 16 26 H 0.05 0.42 8.03 -51.93 -0.42 0.00 16 27 H 0.04 0.23 8.11 -51.93 -0.42 -0.19 16 28 H 0.09 0.56 8.14 -51.92 -0.42 0.14 16 29 H 0.10 0.53 8.01 -51.93 -0.42 0.11 16 30 H 0.10 0.65 6.70 -51.93 -0.35 0.30 16 31 H 0.13 1.62 8.06 -52.49 -0.42 1.20 16 32 H 0.14 2.56 6.52 -52.48 -0.34 2.21 16 33 H 0.40 4.62 8.84 -40.82 -0.36 4.25 16 34 H 0.39 6.73 8.58 -40.82 -0.35 6.38 16 35 H 0.04 0.94 8.14 -51.93 -0.42 0.52 16 36 H 0.06 1.27 6.73 -51.93 -0.35 0.92 16 37 H 0.03 0.66 8.14 -51.93 -0.42 0.23 16 38 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 39 H 0.13 1.25 8.06 -52.49 -0.42 0.83 16 40 H 0.13 1.29 5.85 -52.49 -0.31 0.99 16 LS Contribution 336.22 15.07 5.07 5.07 Total: -1.00 -33.25 336.22 -6.72 -39.97 By element: Atomic # 1 Polarization: 14.34 SS G_CDS: -5.31 Total: 9.02 kcal Atomic # 6 Polarization: 2.94 SS G_CDS: -1.45 Total: 1.50 kcal Atomic # 7 Polarization: -50.81 SS G_CDS: 0.39 Total: -50.41 kcal Atomic # 8 Polarization: -21.14 SS G_CDS: -0.97 Total: -22.11 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -4.45 Total: 16.97 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -33.25 -6.72 -39.97 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001119322009.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.721 kcal (2) G-P(sol) polarization free energy of solvation -33.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.722 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.974 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds