Wall clock time and date at job start Tue Mar 31 2020 07:45:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42892 * 1 3 3 C 1.42900 * 114.00042 * 2 1 4 4 O 1.42894 * 109.47103 * 75.00455 * 3 2 1 5 5 C 1.35972 * 117.00377 * 74.99871 * 4 3 2 6 6 C 1.38720 * 119.99056 * 179.97438 * 5 4 3 7 7 C 1.38094 * 120.01463 * 180.02562 * 6 5 4 8 8 C 1.38836 * 119.98626 * 359.97438 * 7 6 5 9 9 N 1.40157 * 120.01109 * 179.97438 * 8 7 6 10 10 C 1.34777 * 120.00161 * 34.73807 * 9 8 7 11 11 O 1.21583 * 119.99839 * 5.40299 * 10 9 8 12 12 N 1.34777 * 119.99757 * 185.40576 * 10 9 8 13 13 C 1.46498 * 119.99604 * 180.02562 * 12 10 9 14 14 H 1.08992 * 109.47613 * 324.99486 * 13 12 10 15 15 C 1.53004 * 109.47375 * 84.99910 * 13 12 10 16 16 C 1.50706 * 109.46599 * 204.99623 * 13 12 10 17 17 H 1.07998 * 120.00064 * 334.89768 * 16 13 12 18 18 C 1.37874 * 119.99609 * 154.90596 * 16 13 12 19 19 N 1.31513 * 120.00149 * 174.95375 * 18 16 13 20 20 Si 1.86798 * 120.00292 * 354.94523 * 18 16 13 21 21 H 1.48497 * 109.47455 * 275.03534 * 20 18 16 22 22 H 1.48500 * 109.47098 * 35.03239 * 20 18 16 23 23 H 1.48499 * 109.47449 * 155.03225 * 20 18 16 24 24 C 1.38832 * 119.97333 * 0.25576 * 8 7 6 25 25 C 1.38095 * 119.98360 * 359.53542 * 24 8 7 26 26 H 1.09000 * 109.47207 * 299.99525 * 1 2 3 27 27 H 1.08996 * 109.47551 * 59.99614 * 1 2 3 28 28 H 1.09007 * 109.47158 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.46954 * 314.99885 * 3 2 1 30 30 H 1.09006 * 109.46941 * 195.00032 * 3 2 1 31 31 H 1.07999 * 119.98925 * 0.02562 * 6 5 4 32 32 H 1.08005 * 120.00528 * 179.97438 * 7 6 5 33 33 H 0.97004 * 119.99690 * 214.74405 * 9 8 7 34 34 H 0.96999 * 120.00038 * 359.97438 * 12 10 9 35 35 H 1.09004 * 109.46872 * 54.98537 * 15 13 12 36 36 H 1.08996 * 109.47342 * 174.99081 * 15 13 12 37 37 H 1.09003 * 109.46663 * 294.99290 * 15 13 12 38 38 H 0.97004 * 120.00517 * 179.97438 * 19 18 16 39 39 H 1.07996 * 120.00751 * 179.74205 * 24 8 7 40 40 H 1.07998 * 119.99433 * 180.20974 * 25 24 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 8 1.8854 1.8824 1.3013 5 6 2.7192 1.4128 2.2673 6 6 2.6516 1.9296 3.5529 7 6 3.4986 1.4534 4.5342 8 6 4.4174 0.4568 4.2341 9 7 5.2776 -0.0265 5.2295 10 6 4.8493 -0.1178 6.5042 11 8 3.6891 0.1252 6.7745 12 7 5.7072 -0.4783 7.4791 13 6 5.2415 -0.5781 8.8645 14 1 4.4915 0.1903 9.0520 15 6 4.6258 -1.9593 9.0975 16 6 6.4059 -0.3827 9.8011 17 1 7.4094 -0.6033 9.4685 18 6 6.1899 0.0776 11.0827 19 7 7.1916 0.1540 11.9315 20 14 4.4747 0.5929 11.6135 21 1 4.2374 2.0045 11.2184 22 1 3.4697 -0.2807 10.9561 23 1 4.3532 0.4645 13.0879 24 6 4.4879 -0.0566 2.9461 25 6 3.6375 0.4174 1.9668 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3634 -1.0277 0.0005 29 1 1.4941 1.9329 -0.7267 30 1 3.0648 1.2336 -0.2660 31 1 1.9365 2.7045 3.7863 32 1 3.4461 1.8561 5.5350 33 1 6.1813 -0.2952 5.0011 34 1 6.6328 -0.6724 7.2634 35 1 5.3475 -2.7294 8.8248 36 1 4.3604 -2.0661 10.1492 37 1 3.7311 -2.0663 8.4841 38 1 7.0398 0.4782 12.8331 39 1 5.2053 -0.8289 2.7111 40 1 3.6898 0.0157 0.9656 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001119322009.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:45:56 Heat of formation + Delta-G solvation = -108.878543 kcal Electronic energy + Delta-G solvation = -23040.801972 eV Core-core repulsion = 19434.354199 eV Total energy + Delta-G solvation = -3606.447773 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.70204 -40.88215 -39.09333 -37.60677 -36.69257 -35.30279 -34.34000 -32.04158 -31.66757 -29.47746 -28.48027 -27.27928 -26.19526 -23.97177 -23.79100 -22.31418 -21.52070 -20.02929 -19.40592 -18.66696 -18.31469 -17.82617 -17.50113 -16.96887 -16.45468 -16.27270 -15.96538 -15.44195 -15.13801 -15.02494 -14.82003 -14.58135 -14.38365 -14.33576 -14.16754 -13.64572 -13.47414 -13.16367 -13.08600 -12.81815 -12.49358 -12.40421 -12.31535 -11.84395 -11.75674 -11.28432 -11.23623 -11.18000 -10.85319 -10.80605 -9.96602 -9.88116 -8.66505 -8.37751 -6.43259 0.36922 0.38316 1.31107 1.36091 1.46820 1.75076 2.14711 2.28901 2.30214 2.73984 2.93128 2.99329 3.41356 3.87413 3.94547 4.10749 4.23620 4.35499 4.40787 4.46765 4.48470 4.55011 4.65056 4.73899 4.83115 4.86032 4.90713 5.03474 5.08369 5.31149 5.31810 5.40181 5.46817 5.52780 5.70237 5.81198 5.95363 6.00434 6.31312 6.45945 6.60897 7.16610 7.24726 7.62835 8.77132 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.033688 B = 0.002885 C = 0.002828 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 830.957073 B = 9703.096185 C = 9897.594248 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.413 6.413 3 C 0.201 3.799 4 O -0.343 6.343 5 C 0.103 3.897 6 C -0.141 4.141 7 C -0.104 4.104 8 C 0.123 3.877 9 N -0.675 5.675 10 C 0.694 3.306 11 O -0.625 6.625 12 N -0.712 5.712 13 C 0.257 3.743 14 H 0.026 0.974 15 C -0.145 4.145 16 C -0.527 4.527 17 H 0.059 0.941 18 C 0.034 3.966 19 N -0.931 5.931 20 Si 0.923 3.077 21 H -0.276 1.276 22 H -0.250 1.250 23 H -0.278 1.278 24 C -0.104 4.104 25 C -0.169 4.169 26 H 0.036 0.964 27 H 0.066 0.934 28 H 0.093 0.907 29 H 0.132 0.868 30 H 0.119 0.881 31 H 0.134 0.866 32 H 0.113 0.887 33 H 0.422 0.578 34 H 0.405 0.595 35 H 0.059 0.941 36 H 0.049 0.951 37 H 0.033 0.967 38 H 0.270 0.730 39 H 0.157 0.843 40 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.402 0.706 -26.981 28.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.333 6.333 3 C 0.089 3.911 4 O -0.259 6.259 5 C 0.058 3.942 6 C -0.160 4.160 7 C -0.125 4.125 8 C 0.028 3.972 9 N -0.325 5.325 10 C 0.394 3.606 11 O -0.506 6.506 12 N -0.365 5.365 13 C 0.152 3.848 14 H 0.044 0.956 15 C -0.204 4.204 16 C -0.565 4.565 17 H 0.077 0.923 18 C -0.167 4.167 19 N -0.569 5.569 20 Si 0.748 3.252 21 H -0.202 1.202 22 H -0.174 1.174 23 H -0.203 1.203 24 C -0.124 4.124 25 C -0.188 4.188 26 H 0.055 0.945 27 H 0.085 0.915 28 H 0.112 0.888 29 H 0.149 0.851 30 H 0.137 0.863 31 H 0.152 0.848 32 H 0.131 0.869 33 H 0.260 0.740 34 H 0.241 0.759 35 H 0.078 0.922 36 H 0.068 0.932 37 H 0.052 0.948 38 H 0.080 0.920 39 H 0.175 0.825 40 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -9.376 0.925 -26.445 28.073 hybrid contribution 0.203 0.267 0.732 0.805 sum -9.172 1.192 -25.713 27.326 Atomic orbital electron populations 1.22944 0.79396 1.03781 1.00981 1.88018 1.22126 1.29562 1.93612 1.24645 1.01293 0.83400 0.81792 1.86226 1.57630 1.60983 1.21091 1.18921 0.91390 0.95117 0.88780 1.20358 1.01917 1.03242 0.90503 1.20922 0.96697 0.95783 0.99106 1.17653 0.95157 0.95529 0.88821 1.42446 1.16921 1.68221 1.04890 1.16223 0.84868 0.78259 0.81207 1.90858 1.18357 1.58742 1.82602 1.45367 1.12662 1.71585 1.06881 1.18690 0.94109 0.94103 0.77891 0.95560 1.22211 0.99117 0.98724 1.00303 1.21174 0.93697 1.44834 0.96795 0.92305 1.25522 1.00032 0.94623 0.96501 1.69971 1.33207 1.47268 1.06477 0.86139 0.81721 0.79634 0.77753 1.20201 1.17385 1.20307 1.20925 1.00891 1.00048 0.90564 1.21268 0.97231 0.98982 1.01356 0.94477 0.91497 0.88815 0.85062 0.86333 0.84819 0.86880 0.74012 0.75938 0.92161 0.93158 0.94779 0.92033 0.82532 0.82519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.31 10.89 113.37 1.23 1.55 16 2 O -0.41 -6.73 10.18 -126.21 -1.29 -8.01 16 3 C 0.20 2.55 6.39 113.37 0.72 3.28 16 4 O -0.34 -7.01 10.20 -70.46 -0.72 -7.73 16 5 C 0.10 2.47 6.63 22.50 0.15 2.62 16 6 C -0.14 -3.93 9.98 22.35 0.22 -3.71 16 7 C -0.10 -3.37 8.65 22.38 0.19 -3.18 16 8 C 0.12 3.55 6.25 38.09 0.24 3.79 16 9 N -0.68 -19.51 5.35 -317.06 -1.70 -21.20 16 10 C 0.69 26.90 8.26 179.05 1.48 28.38 16 11 O -0.62 -29.28 13.79 -3.98 -0.05 -29.33 16 12 N -0.71 -28.03 5.07 -461.41 -2.34 -30.37 16 13 C 0.26 12.15 2.12 44.25 0.09 12.25 16 14 H 0.03 1.38 5.34 -2.39 -0.01 1.36 16 15 C -0.14 -6.30 9.10 71.98 0.66 -5.65 16 16 C -0.53 -28.32 9.06 25.60 0.23 -28.09 16 17 H 0.06 3.34 8.02 -2.91 -0.02 3.31 16 18 C 0.03 1.88 5.47 84.65 0.46 2.34 16 19 N -0.93 -55.36 13.96 21.45 0.30 -55.06 16 20 Si 0.92 44.45 26.19 68.60 1.80 46.25 16 21 H -0.28 -13.35 7.11 99.48 0.71 -12.65 16 22 H -0.25 -11.66 6.14 99.48 0.61 -11.05 16 23 H -0.28 -12.88 7.11 99.48 0.71 -12.18 16 24 C -0.10 -2.27 9.96 22.38 0.22 -2.05 16 25 C -0.17 -3.50 8.78 22.35 0.20 -3.31 16 26 H 0.04 0.56 8.03 -2.39 -0.02 0.54 16 27 H 0.07 0.52 8.11 -2.39 -0.02 0.50 16 28 H 0.09 1.02 8.14 -2.38 -0.02 1.00 16 29 H 0.13 0.87 8.01 -2.39 -0.02 0.85 16 30 H 0.12 1.06 6.70 -2.38 -0.02 1.04 16 31 H 0.13 3.44 8.06 -2.91 -0.02 3.41 16 32 H 0.11 4.29 6.52 -2.91 -0.02 4.27 16 33 H 0.42 8.78 8.84 -92.71 -0.82 7.96 16 34 H 0.41 13.58 8.58 -92.71 -0.80 12.78 16 35 H 0.06 2.41 8.14 -2.38 -0.02 2.39 16 36 H 0.05 2.22 6.73 -2.39 -0.02 2.20 16 37 H 0.03 1.44 8.14 -2.39 -0.02 1.42 16 38 H 0.27 15.12 8.31 -92.70 -0.77 14.35 16 39 H 0.16 2.43 8.06 -2.91 -0.02 2.40 16 40 H 0.16 2.43 5.85 -2.91 -0.02 2.41 16 Total: -1.00 -72.38 336.22 1.48 -70.90 By element: Atomic # 1 Polarization: 26.96 SS G_CDS: -0.63 Total: 26.33 kcal Atomic # 6 Polarization: 2.12 SS G_CDS: 6.10 Total: 8.23 kcal Atomic # 7 Polarization: -102.90 SS G_CDS: -3.74 Total: -106.63 kcal Atomic # 8 Polarization: -43.02 SS G_CDS: -2.06 Total: -45.08 kcal Atomic # 14 Polarization: 44.45 SS G_CDS: 1.80 Total: 46.25 kcal Total: -72.38 1.48 -70.90 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001119322009.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.974 kcal (2) G-P(sol) polarization free energy of solvation -72.380 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.354 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.905 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.879 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds