Wall clock time and date at job start Tue Mar 31 2020 07:46:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42901 * 113.99800 * 2 1 4 4 O 1.42897 * 109.47145 * 75.00263 * 3 2 1 5 5 C 1.35983 * 117.00292 * 74.99677 * 4 3 2 6 6 C 1.38715 * 119.98812 * 180.02562 * 5 4 3 7 7 C 1.38095 * 120.01135 * 180.02562 * 6 5 4 8 8 C 1.38837 * 119.98716 * 0.02562 * 7 6 5 9 9 N 1.40154 * 120.01102 * 179.97438 * 8 7 6 10 10 C 1.34778 * 119.99798 * 144.93385 * 9 8 7 11 11 O 1.21597 * 119.99907 * 4.63226 * 10 9 8 12 12 N 1.34774 * 120.00227 * 184.63549 * 10 9 8 13 13 C 1.46496 * 120.00207 * 179.97438 * 12 10 9 14 14 H 1.09000 * 109.46937 * 34.99700 * 13 12 10 15 15 C 1.53003 * 109.47012 * 274.99979 * 13 12 10 16 16 C 1.50699 * 109.47344 * 155.00091 * 13 12 10 17 17 H 1.08002 * 119.99924 * 359.97438 * 16 13 12 18 18 C 1.37874 * 120.00049 * 180.02562 * 16 13 12 19 19 N 1.31515 * 120.00258 * 359.97438 * 18 16 13 20 20 Si 1.86808 * 119.99856 * 179.97438 * 18 16 13 21 21 H 1.48501 * 109.46823 * 59.99612 * 20 18 16 22 22 H 1.48494 * 109.46901 * 179.97438 * 20 18 16 23 23 H 1.48494 * 109.47181 * 300.00064 * 20 18 16 24 24 C 1.38832 * 119.97318 * 0.27092 * 8 7 6 25 25 C 1.38098 * 119.97965 * 359.44762 * 24 8 7 26 26 H 1.09003 * 109.47242 * 300.00010 * 1 2 3 27 27 H 1.08997 * 109.47390 * 59.99708 * 1 2 3 28 28 H 1.09002 * 109.47178 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47343 * 315.00596 * 3 2 1 30 30 H 1.08999 * 109.47198 * 195.00115 * 3 2 1 31 31 H 1.07995 * 119.99391 * 359.97438 * 6 5 4 32 32 H 1.08002 * 120.00710 * 179.97438 * 7 6 5 33 33 H 0.96995 * 119.99921 * 324.92991 * 9 8 7 34 34 H 0.97002 * 119.99598 * 0.02562 * 12 10 9 35 35 H 1.08997 * 109.47437 * 59.99838 * 15 13 12 36 36 H 1.09004 * 109.47157 * 180.02562 * 15 13 12 37 37 H 1.09000 * 109.47042 * 299.99656 * 15 13 12 38 38 H 0.97000 * 119.99790 * 179.97438 * 19 18 16 39 39 H 1.07995 * 120.00704 * 179.70341 * 24 8 7 40 40 H 1.08003 * 119.99110 * 180.27943 * 25 24 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 8 1.8854 1.8824 1.3014 5 6 2.7192 1.4128 2.2675 6 6 2.6508 1.9289 3.5532 7 6 3.4977 1.4527 4.5346 8 6 4.4181 0.4576 4.2339 9 7 5.2782 -0.0256 5.2294 10 6 5.6324 -1.3260 5.2408 11 8 5.2747 -2.0615 4.3410 12 7 6.3831 -1.8112 6.2495 13 6 6.7676 -3.2247 6.2622 14 1 6.9385 -3.5639 5.2405 15 6 5.6465 -4.0526 6.8935 16 6 8.0310 -3.3944 7.0659 17 1 8.5009 -2.5352 7.5213 18 6 8.5878 -4.6465 7.2188 19 7 8.0160 -5.6927 6.6638 20 14 10.1543 -4.8567 8.2145 21 1 9.9217 -4.3948 9.6066 22 1 10.5440 -6.2896 8.2274 23 1 11.2421 -4.0529 7.6016 24 6 4.4902 -0.0541 2.9454 25 6 3.6388 0.4189 1.9664 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 1.4940 1.9330 -0.7266 30 1 3.0648 1.2337 -0.2660 31 1 1.9357 2.7038 3.7866 32 1 3.4447 1.8548 5.5355 33 1 5.6186 0.5758 5.9101 34 1 6.6681 -1.2245 6.9675 35 1 4.7326 -3.9298 6.3123 36 1 5.9328 -5.1043 6.9034 37 1 5.4756 -3.7134 7.9152 38 1 8.4079 -6.5735 6.7712 39 1 5.2092 -0.8247 2.7098 40 1 3.6917 0.0177 0.9650 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001119322011.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:46:00 Heat of formation + Delta-G solvation = -84.707846 kcal Electronic energy + Delta-G solvation = -23037.848831 eV Core-core repulsion = 19432.449178 eV Total energy + Delta-G solvation = -3605.399652 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.47569 -39.60715 -37.97332 -36.58498 -34.88325 -33.83921 -32.34802 -30.91367 -29.41641 -28.19549 -27.54711 -25.37030 -25.22186 -23.04063 -22.18380 -20.95682 -19.80098 -18.45852 -18.21292 -17.44911 -17.06401 -16.55515 -15.94460 -15.59310 -15.00565 -14.85102 -14.44526 -14.19819 -14.07683 -13.86201 -13.49587 -13.40086 -13.02645 -12.56564 -12.34827 -12.26128 -11.88889 -11.65290 -11.38736 -11.09556 -10.96877 -10.93474 -10.72792 -10.36982 -10.31363 -10.22441 -9.69564 -9.33958 -9.04578 -8.83141 -8.55772 -7.99800 -7.46200 -6.12089 -4.21491 1.44351 1.56198 3.09764 3.25049 3.26072 3.31283 3.34497 3.46040 3.72995 4.08822 4.32656 4.67168 4.81371 4.95954 5.02497 5.05252 5.07584 5.17267 5.20406 5.39781 5.45792 5.49485 5.71517 6.00570 6.12922 6.51850 6.52645 6.58691 6.67867 6.82651 6.99956 7.08174 7.14652 7.27232 7.44021 7.48448 7.62600 7.85067 8.01779 8.16210 8.73954 8.86830 9.26723 9.47315 10.93924 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.030882 B = 0.002822 C = 0.002694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 906.444962 B = 9918.264664 C =10389.281173 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.393 6.393 3 C 0.212 3.788 4 O -0.336 6.336 5 C 0.098 3.902 6 C -0.132 4.132 7 C -0.120 4.120 8 C 0.147 3.853 9 N -0.696 5.696 10 C 0.692 3.308 11 O -0.583 6.583 12 N -0.720 5.720 13 C 0.281 3.719 14 H 0.049 0.951 15 C -0.148 4.148 16 C -0.535 4.535 17 H 0.061 0.939 18 C 0.066 3.934 19 N -0.883 5.883 20 Si 0.903 3.097 21 H -0.276 1.276 22 H -0.286 1.286 23 H -0.276 1.276 24 C -0.083 4.083 25 C -0.173 4.173 26 H 0.049 0.951 27 H 0.043 0.957 28 H 0.087 0.913 29 H 0.102 0.898 30 H 0.101 0.899 31 H 0.128 0.872 32 H 0.129 0.871 33 H 0.401 0.599 34 H 0.386 0.614 35 H 0.015 0.985 36 H 0.090 0.910 37 H 0.025 0.975 38 H 0.265 0.735 39 H 0.147 0.853 40 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.567 16.351 -8.890 21.913 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.312 6.312 3 C 0.098 3.902 4 O -0.252 6.252 5 C 0.053 3.947 6 C -0.151 4.151 7 C -0.141 4.141 8 C 0.052 3.948 9 N -0.345 5.345 10 C 0.393 3.607 11 O -0.461 6.461 12 N -0.371 5.371 13 C 0.179 3.821 14 H 0.067 0.933 15 C -0.207 4.207 16 C -0.573 4.573 17 H 0.079 0.921 18 C -0.137 4.137 19 N -0.520 5.520 20 Si 0.730 3.270 21 H -0.202 1.202 22 H -0.211 1.211 23 H -0.202 1.202 24 C -0.103 4.103 25 C -0.192 4.192 26 H 0.068 0.932 27 H 0.061 0.939 28 H 0.106 0.894 29 H 0.119 0.881 30 H 0.119 0.881 31 H 0.146 0.854 32 H 0.147 0.853 33 H 0.236 0.764 34 H 0.218 0.782 35 H 0.034 0.966 36 H 0.109 0.891 37 H 0.045 0.955 38 H 0.075 0.925 39 H 0.164 0.836 40 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -11.840 15.310 -9.658 21.630 hybrid contribution 0.998 0.425 1.154 1.584 sum -10.842 15.735 -8.504 20.915 Atomic orbital electron populations 1.22813 0.80322 1.03141 1.00329 1.88096 1.20981 1.28537 1.93616 1.24148 0.99806 0.83321 0.82885 1.86180 1.58117 1.60741 1.20157 1.18837 0.91582 0.95319 0.88954 1.20082 1.01927 1.02969 0.90156 1.20651 0.95026 0.99292 0.99168 1.17493 0.92591 0.96550 0.88207 1.42801 1.50690 1.09655 1.31326 1.16175 0.79909 0.80862 0.83792 1.90872 1.59880 1.57343 1.37990 1.45856 1.53535 1.14110 1.23563 1.18667 0.92267 0.73078 0.98079 0.93277 1.22106 0.96738 1.04255 0.97600 1.21173 1.08599 0.93842 1.33699 0.92133 1.24881 0.97589 0.95618 0.95602 1.69897 1.39446 0.99246 1.43443 0.86491 0.82970 0.77173 0.80341 1.20177 1.21117 1.20188 1.21257 0.99351 0.99326 0.90403 1.21187 0.98173 0.99095 1.00791 0.93226 0.93882 0.89417 0.88079 0.88088 0.85376 0.85317 0.76396 0.78196 0.96563 0.89110 0.95537 0.92481 0.83587 0.85119 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 10.89 101.05 1.10 1.35 16 2 O -0.39 -4.39 10.19 -59.04 -0.60 -5.00 16 3 C 0.21 1.93 6.39 101.05 0.65 2.58 16 4 O -0.34 -3.93 10.20 -43.50 -0.44 -4.37 16 5 C 0.10 1.30 6.63 -39.23 -0.26 1.04 16 6 C -0.13 -1.64 9.98 -39.46 -0.39 -2.03 16 7 C -0.12 -1.53 9.96 -39.41 -0.39 -1.92 16 8 C 0.15 2.29 6.30 -83.61 -0.53 1.76 16 9 N -0.70 -10.92 5.35 -14.19 -0.08 -11.00 16 10 C 0.69 14.24 8.37 -86.92 -0.73 13.52 16 11 O -0.58 -14.28 13.46 5.28 0.07 -14.21 16 12 N -0.72 -15.04 5.07 -59.81 -0.30 -15.35 16 13 C 0.28 7.19 2.56 -69.08 -0.18 7.01 16 14 H 0.05 1.45 7.58 -51.93 -0.39 1.06 16 15 C -0.15 -3.75 9.26 37.16 0.34 -3.40 16 16 C -0.53 -14.14 8.73 -34.44 -0.30 -14.44 16 17 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 18 C 0.07 1.79 5.30 -17.82 -0.09 1.69 16 19 N -0.88 -24.93 11.32 55.43 0.63 -24.30 16 20 Si 0.90 20.59 29.54 -169.99 -5.02 15.57 16 21 H -0.28 -6.18 7.11 56.52 0.40 -5.77 16 22 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 23 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 24 C -0.08 -1.38 8.69 -39.41 -0.34 -1.72 16 25 C -0.17 -2.50 8.78 -39.46 -0.35 -2.85 16 26 H 0.05 0.44 8.03 -51.93 -0.42 0.02 16 27 H 0.04 0.26 8.11 -51.93 -0.42 -0.16 16 28 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.10 0.61 8.01 -51.93 -0.42 0.19 16 30 H 0.10 0.82 6.69 -51.93 -0.35 0.47 16 31 H 0.13 1.30 8.06 -52.49 -0.42 0.88 16 32 H 0.13 1.29 8.06 -52.49 -0.42 0.86 16 33 H 0.40 4.80 8.84 -40.82 -0.36 4.44 16 34 H 0.39 6.84 8.56 -40.82 -0.35 6.49 16 35 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 36 H 0.09 2.48 6.07 -51.93 -0.32 2.16 16 37 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.27 7.11 8.31 -40.82 -0.34 6.77 16 39 H 0.15 2.78 6.24 -52.49 -0.33 2.45 16 40 H 0.13 1.73 5.85 -52.48 -0.31 1.42 16 LS Contribution 338.85 15.07 5.11 5.11 Total: -1.00 -32.67 338.85 -7.42 -40.09 By element: Atomic # 1 Polarization: 16.16 SS G_CDS: -5.31 Total: 10.85 kcal Atomic # 6 Polarization: 4.07 SS G_CDS: -1.47 Total: 2.60 kcal Atomic # 7 Polarization: -50.89 SS G_CDS: 0.25 Total: -50.64 kcal Atomic # 8 Polarization: -22.60 SS G_CDS: -0.97 Total: -23.58 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -5.02 Total: 15.57 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -32.67 -7.42 -40.09 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001119322011.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.619 kcal (2) G-P(sol) polarization free energy of solvation -32.667 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.422 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.089 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.708 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds