Wall clock time and date at job start Tue Mar 31 2020 07:45:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42901 * 113.99800 * 2 1 4 4 O 1.42897 * 109.47145 * 75.00263 * 3 2 1 5 5 C 1.35983 * 117.00292 * 74.99677 * 4 3 2 6 6 C 1.38715 * 119.98812 * 180.02562 * 5 4 3 7 7 C 1.38095 * 120.01135 * 180.02562 * 6 5 4 8 8 C 1.38837 * 119.98716 * 0.02562 * 7 6 5 9 9 N 1.40154 * 120.01102 * 179.97438 * 8 7 6 10 10 C 1.34778 * 119.99798 * 144.93385 * 9 8 7 11 11 O 1.21597 * 119.99907 * 4.63226 * 10 9 8 12 12 N 1.34774 * 120.00227 * 184.63549 * 10 9 8 13 13 C 1.46496 * 120.00207 * 179.97438 * 12 10 9 14 14 H 1.09000 * 109.46937 * 34.99700 * 13 12 10 15 15 C 1.53003 * 109.47012 * 274.99979 * 13 12 10 16 16 C 1.50699 * 109.47344 * 155.00091 * 13 12 10 17 17 H 1.08002 * 119.99924 * 359.97438 * 16 13 12 18 18 C 1.37874 * 120.00049 * 180.02562 * 16 13 12 19 19 N 1.31515 * 120.00258 * 359.97438 * 18 16 13 20 20 Si 1.86808 * 119.99856 * 179.97438 * 18 16 13 21 21 H 1.48501 * 109.46823 * 59.99612 * 20 18 16 22 22 H 1.48494 * 109.46901 * 179.97438 * 20 18 16 23 23 H 1.48494 * 109.47181 * 300.00064 * 20 18 16 24 24 C 1.38832 * 119.97318 * 0.27092 * 8 7 6 25 25 C 1.38098 * 119.97965 * 359.44762 * 24 8 7 26 26 H 1.09003 * 109.47242 * 300.00010 * 1 2 3 27 27 H 1.08997 * 109.47390 * 59.99708 * 1 2 3 28 28 H 1.09002 * 109.47178 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47343 * 315.00596 * 3 2 1 30 30 H 1.08999 * 109.47198 * 195.00115 * 3 2 1 31 31 H 1.07995 * 119.99391 * 359.97438 * 6 5 4 32 32 H 1.08002 * 120.00710 * 179.97438 * 7 6 5 33 33 H 0.96995 * 119.99921 * 324.92991 * 9 8 7 34 34 H 0.97002 * 119.99598 * 0.02562 * 12 10 9 35 35 H 1.08997 * 109.47437 * 59.99838 * 15 13 12 36 36 H 1.09004 * 109.47157 * 180.02562 * 15 13 12 37 37 H 1.09000 * 109.47042 * 299.99656 * 15 13 12 38 38 H 0.97000 * 119.99790 * 179.97438 * 19 18 16 39 39 H 1.07995 * 120.00704 * 179.70341 * 24 8 7 40 40 H 1.08003 * 119.99110 * 180.27943 * 25 24 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 8 1.8854 1.8824 1.3014 5 6 2.7192 1.4128 2.2675 6 6 2.6508 1.9289 3.5532 7 6 3.4977 1.4527 4.5346 8 6 4.4181 0.4576 4.2339 9 7 5.2782 -0.0256 5.2294 10 6 5.6324 -1.3260 5.2408 11 8 5.2747 -2.0615 4.3410 12 7 6.3831 -1.8112 6.2495 13 6 6.7676 -3.2247 6.2622 14 1 6.9385 -3.5639 5.2405 15 6 5.6465 -4.0526 6.8935 16 6 8.0310 -3.3944 7.0659 17 1 8.5009 -2.5352 7.5213 18 6 8.5878 -4.6465 7.2188 19 7 8.0160 -5.6927 6.6638 20 14 10.1543 -4.8567 8.2145 21 1 9.9217 -4.3948 9.6066 22 1 10.5440 -6.2896 8.2274 23 1 11.2421 -4.0529 7.6016 24 6 4.4902 -0.0541 2.9454 25 6 3.6388 0.4189 1.9664 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 1.4940 1.9330 -0.7266 30 1 3.0648 1.2337 -0.2660 31 1 1.9357 2.7038 3.7866 32 1 3.4447 1.8548 5.5355 33 1 5.6186 0.5758 5.9101 34 1 6.6681 -1.2245 6.9675 35 1 4.7326 -3.9298 6.3123 36 1 5.9328 -5.1043 6.9034 37 1 5.4756 -3.7134 7.9152 38 1 8.4079 -6.5735 6.7712 39 1 5.2092 -0.8247 2.7098 40 1 3.6917 0.0177 0.9650 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001119322011.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:45:59 Heat of formation + Delta-G solvation = -107.779789 kcal Electronic energy + Delta-G solvation = -23038.849305 eV Core-core repulsion = 19432.449178 eV Total energy + Delta-G solvation = -3606.400127 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.68002 -40.85197 -39.07789 -37.59993 -36.67729 -35.28367 -34.25195 -32.00283 -31.09847 -29.40592 -28.44570 -27.32979 -26.15780 -24.33803 -23.45016 -22.43268 -21.53558 -19.83688 -19.38732 -18.75670 -17.89597 -17.78787 -17.51440 -16.86553 -16.53563 -16.15440 -15.89071 -15.57406 -15.20637 -14.99397 -14.86238 -14.41866 -14.33603 -14.17400 -13.88354 -13.53162 -13.22118 -12.98228 -12.86605 -12.74986 -12.64281 -12.26828 -12.20942 -12.14277 -11.85730 -11.22401 -11.12542 -11.09514 -10.83005 -10.59253 -9.94204 -9.80408 -8.65820 -8.16719 -6.34440 0.36200 0.42578 1.45949 1.48462 1.56116 1.80065 2.18565 2.29188 2.43201 2.74833 2.93358 3.13728 3.47499 3.92081 3.93113 4.09191 4.22507 4.35958 4.45796 4.46941 4.54779 4.58663 4.74671 4.83891 4.91264 4.93649 5.09332 5.11264 5.33460 5.38917 5.44798 5.52650 5.60912 5.67733 5.79605 5.87140 5.97990 6.09762 6.29611 6.44058 6.73381 7.26498 7.34767 7.70476 8.89666 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.030882 B = 0.002822 C = 0.002694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 906.444962 B = 9918.264664 C =10389.281173 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.420 6.420 3 C 0.202 3.798 4 O -0.335 6.335 5 C 0.101 3.899 6 C -0.129 4.129 7 C -0.102 4.102 8 C 0.120 3.880 9 N -0.674 5.674 10 C 0.691 3.309 11 O -0.628 6.628 12 N -0.714 5.714 13 C 0.289 3.711 14 H -0.002 1.002 15 C -0.134 4.134 16 C -0.547 4.547 17 H 0.075 0.925 18 C 0.014 3.986 19 N -0.918 5.918 20 Si 0.975 3.025 21 H -0.263 1.263 22 H -0.287 1.287 23 H -0.271 1.271 24 C -0.108 4.108 25 C -0.181 4.181 26 H 0.044 0.956 27 H 0.069 0.931 28 H 0.089 0.911 29 H 0.138 0.862 30 H 0.106 0.894 31 H 0.160 0.840 32 H 0.164 0.836 33 H 0.422 0.578 34 H 0.404 0.596 35 H 0.009 0.991 36 H 0.067 0.933 37 H 0.041 0.959 38 H 0.266 0.734 39 H 0.110 0.890 40 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.175 19.029 -7.833 23.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.340 6.340 3 C 0.090 3.910 4 O -0.252 6.252 5 C 0.056 3.944 6 C -0.148 4.148 7 C -0.123 4.123 8 C 0.025 3.975 9 N -0.324 5.324 10 C 0.391 3.609 11 O -0.509 6.509 12 N -0.367 5.367 13 C 0.186 3.814 14 H 0.016 0.984 15 C -0.193 4.193 16 C -0.585 4.585 17 H 0.093 0.907 18 C -0.186 4.186 19 N -0.556 5.556 20 Si 0.799 3.201 21 H -0.188 1.188 22 H -0.213 1.213 23 H -0.196 1.196 24 C -0.129 4.129 25 C -0.200 4.200 26 H 0.063 0.937 27 H 0.087 0.913 28 H 0.107 0.893 29 H 0.156 0.844 30 H 0.124 0.876 31 H 0.177 0.823 32 H 0.182 0.818 33 H 0.260 0.740 34 H 0.239 0.761 35 H 0.028 0.972 36 H 0.086 0.914 37 H 0.060 0.940 38 H 0.075 0.925 39 H 0.128 0.872 40 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -12.463 18.076 -8.584 23.574 hybrid contribution 1.064 -0.331 0.676 1.303 sum -11.399 17.745 -7.908 22.525 Atomic orbital electron populations 1.22962 0.79119 1.03681 1.01327 1.88068 1.22500 1.29820 1.93659 1.24578 1.00806 0.83370 0.82267 1.86200 1.57459 1.60690 1.20827 1.19021 0.90937 0.94447 0.89996 1.20503 1.01872 1.03001 0.89427 1.20963 0.93136 0.97299 1.00859 1.17713 0.94091 0.98149 0.87579 1.42402 1.50256 1.07942 1.31786 1.16297 0.79496 0.82154 0.82947 1.90854 1.61389 1.59138 1.39519 1.45427 1.53923 1.12797 1.24518 1.18236 0.92649 0.75435 0.95127 0.98388 1.21925 0.96231 1.02918 0.98237 1.21506 1.08897 0.94514 1.33604 0.90655 1.25818 1.00930 0.95275 0.96608 1.70056 1.41099 0.99730 1.44752 0.85359 0.78648 0.76929 0.79153 1.18751 1.21253 1.19587 1.21085 1.00003 0.99680 0.92120 1.21188 0.98427 0.99836 1.00563 0.93745 0.91286 0.89277 0.84449 0.87605 0.82274 0.81811 0.73986 0.76063 0.97233 0.91385 0.93995 0.92513 0.87191 0.84844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.38 10.89 113.37 1.23 1.62 16 2 O -0.42 -9.04 10.19 -126.21 -1.29 -10.32 16 3 C 0.20 3.34 6.39 113.37 0.72 4.07 16 4 O -0.34 -7.13 10.20 -70.59 -0.72 -7.85 16 5 C 0.10 2.53 6.63 22.50 0.15 2.68 16 6 C -0.13 -2.80 9.98 22.35 0.22 -2.57 16 7 C -0.10 -2.30 9.96 22.38 0.22 -2.08 16 8 C 0.12 3.64 6.30 38.10 0.24 3.88 16 9 N -0.67 -20.72 5.35 -317.05 -1.70 -22.41 16 10 C 0.69 29.05 8.37 179.05 1.50 30.55 16 11 O -0.63 -32.48 13.46 -4.02 -0.05 -32.53 16 12 N -0.71 -30.07 5.07 -461.41 -2.34 -32.41 16 13 C 0.29 15.24 2.56 44.25 0.11 15.35 16 14 H 0.00 -0.11 7.58 -2.39 -0.02 -0.13 16 15 C -0.13 -6.96 9.26 71.98 0.67 -6.29 16 16 C -0.55 -28.97 8.73 25.60 0.22 -28.75 16 17 H 0.08 3.68 7.74 -2.91 -0.02 3.66 16 18 C 0.01 0.74 5.30 84.65 0.45 1.19 16 19 N -0.92 -53.07 11.32 21.45 0.24 -52.83 16 20 Si 0.97 41.91 29.54 68.60 2.03 43.94 16 21 H -0.26 -10.69 7.11 99.48 0.71 -9.98 16 22 H -0.29 -12.30 7.11 99.48 0.71 -11.59 16 23 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 24 C -0.11 -3.75 8.69 22.38 0.19 -3.56 16 25 C -0.18 -5.29 8.78 22.35 0.20 -5.09 16 26 H 0.04 0.72 8.03 -2.39 -0.02 0.70 16 27 H 0.07 0.69 8.11 -2.39 -0.02 0.67 16 28 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 29 H 0.14 1.24 8.01 -2.39 -0.02 1.22 16 30 H 0.11 1.61 6.69 -2.39 -0.02 1.59 16 31 H 0.16 2.49 8.06 -2.91 -0.02 2.47 16 32 H 0.16 2.51 8.06 -2.91 -0.02 2.49 16 33 H 0.42 9.24 8.84 -92.71 -0.82 8.42 16 34 H 0.40 13.87 8.56 -92.71 -0.79 13.08 16 35 H 0.01 0.45 8.14 -2.39 -0.02 0.43 16 36 H 0.07 3.84 6.07 -2.39 -0.01 3.83 16 37 H 0.04 1.98 8.14 -2.39 -0.02 1.96 16 38 H 0.27 14.55 8.31 -92.71 -0.77 13.78 16 39 H 0.11 4.58 6.24 -2.91 -0.02 4.57 16 40 H 0.13 3.67 5.85 -2.91 -0.02 3.65 16 Total: -1.00 -73.72 338.85 1.78 -71.95 By element: Atomic # 1 Polarization: 32.00 SS G_CDS: -0.53 Total: 31.47 kcal Atomic # 6 Polarization: 4.86 SS G_CDS: 6.14 Total: 11.00 kcal Atomic # 7 Polarization: -103.86 SS G_CDS: -3.79 Total: -107.65 kcal Atomic # 8 Polarization: -48.64 SS G_CDS: -2.06 Total: -50.70 kcal Atomic # 14 Polarization: 41.91 SS G_CDS: 2.03 Total: 43.94 kcal Total: -73.72 1.78 -71.95 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001119322011.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.832 kcal (2) G-P(sol) polarization free energy of solvation -73.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.556 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.776 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.948 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.780 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds