Wall clock time and date at job start Tue Mar 31 2020 06:35:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53008 * 109.47139 * 2 1 4 4 C 1.53002 * 109.47102 * 240.00379 * 2 1 3 5 5 C 1.50688 * 109.47393 * 60.00017 * 4 2 1 6 6 H 1.08005 * 120.00149 * 359.97438 * 5 4 2 7 7 C 1.37877 * 120.00267 * 180.02562 * 5 4 2 8 8 N 1.31517 * 120.00414 * 180.02562 * 7 5 4 9 9 Si 1.86803 * 119.99913 * 359.97438 * 7 5 4 10 10 H 1.48500 * 109.46934 * 90.00155 * 9 7 5 11 11 H 1.48497 * 109.47596 * 210.00592 * 9 7 5 12 12 H 1.48500 * 109.46894 * 330.00393 * 9 7 5 13 13 C 1.52998 * 109.47229 * 119.99905 * 2 1 3 14 14 O 1.45195 * 109.47162 * 300.00181 * 13 2 1 15 15 C 1.34710 * 116.99984 * 179.97438 * 14 13 2 16 16 O 1.21466 * 120.00124 * 359.97438 * 15 14 13 17 17 C 1.47729 * 119.99946 * 179.97438 * 15 14 13 18 18 C 1.39626 * 120.14826 * 179.97438 * 17 15 14 19 19 C 1.37948 * 119.84909 * 180.02562 * 18 17 15 20 20 C 1.38373 * 120.14589 * 0.02562 * 19 18 17 21 21 C 1.50701 * 119.84512 * 179.97438 * 20 19 18 22 22 F 1.39898 * 109.47041 * 90.00037 * 21 20 19 23 23 C 1.38363 * 120.30474 * 0.23429 * 20 19 18 24 24 C 1.37946 * 120.14835 * 359.48871 * 23 20 19 25 25 H 1.09003 * 109.46911 * 300.00199 * 1 2 3 26 26 H 1.09006 * 109.47145 * 59.99445 * 1 2 3 27 27 H 1.08992 * 109.47194 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.46736 * 180.02562 * 3 2 1 29 29 H 1.08996 * 109.46895 * 299.99974 * 3 2 1 30 30 H 1.08994 * 109.47126 * 59.99906 * 3 2 1 31 31 H 1.09007 * 109.46920 * 180.02562 * 4 2 1 32 32 H 1.09000 * 109.46678 * 299.99305 * 4 2 1 33 33 H 0.96999 * 119.99843 * 179.97438 * 8 7 5 34 34 H 1.09002 * 109.47023 * 180.02562 * 13 2 1 35 35 H 1.09006 * 109.46833 * 59.99902 * 13 2 1 36 36 H 1.07998 * 120.07953 * 0.02562 * 18 17 15 37 37 H 1.07994 * 119.92892 * 180.02562 * 19 18 17 38 38 H 1.09002 * 109.47060 * 210.00222 * 21 20 19 39 39 H 1.09001 * 109.47380 * 330.00310 * 21 20 19 40 40 H 1.07999 * 119.92340 * 179.72472 * 23 20 19 41 41 H 1.08007 * 120.07618 * 180.25656 * 24 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 1.5377 -0.0108 -2.4797 6 1 0.9164 0.8671 -2.3806 7 6 1.8703 -0.4821 -3.7320 8 7 1.4324 0.1382 -4.8058 9 14 2.9443 -2.0009 -3.9034 10 1 2.0857 -3.2117 -3.9483 11 1 3.7359 -1.9086 -5.1564 12 1 3.8650 -2.0897 -2.7417 13 6 2.0400 -0.7212 1.2492 14 8 1.5560 -0.0368 2.4347 15 6 1.9175 -0.5490 3.6271 16 8 2.6175 -1.5405 3.6751 17 6 1.4626 0.0952 4.8763 18 6 1.8351 -0.4333 6.1138 19 6 1.4064 0.1729 7.2764 20 6 0.6086 1.3020 7.2180 21 6 0.1436 1.9584 8.4924 22 9 1.0769 2.9227 8.8876 23 6 0.2314 1.8279 5.9951 24 6 0.6577 1.2350 4.8248 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 3.1299 1.4425 -0.0005 29 1 1.6766 1.9564 -0.8900 30 1 1.6767 1.9564 0.8899 31 1 3.1300 -0.7216 -1.2490 32 1 1.6767 -1.7489 -1.2492 33 1 1.6668 -0.1932 -5.6868 34 1 3.1300 -0.7208 1.2494 35 1 1.6766 -1.7489 1.2492 36 1 2.4574 -1.3147 6.1607 37 1 1.6940 -0.2346 8.2342 38 1 -0.8222 2.4350 8.3241 39 1 0.0459 1.2054 9.2744 40 1 -0.3951 2.7067 5.9567 41 1 0.3659 1.6489 3.8708 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001122976267.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:35:01 Heat of formation + Delta-G solvation = -131.219261 kcal Electronic energy + Delta-G solvation = -22876.049246 eV Core-core repulsion = 19248.712746 eV Total energy + Delta-G solvation = -3627.336500 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.142 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -48.05824 -40.60263 -39.15819 -37.26775 -35.51727 -32.89855 -32.29631 -31.43316 -28.21829 -27.58091 -26.47861 -26.27828 -23.44382 -23.07321 -22.28333 -20.72527 -18.46596 -17.90433 -17.12232 -16.82397 -16.49725 -16.31755 -16.21102 -16.14348 -14.91420 -14.78818 -14.24332 -13.98787 -13.95758 -13.83241 -13.56634 -13.04955 -13.00955 -12.47150 -12.43295 -12.26696 -11.76796 -11.53194 -11.38269 -11.33761 -11.08656 -11.00305 -10.62781 -10.60923 -10.43708 -10.37956 -9.88193 -9.76447 -9.56079 -9.40167 -9.39290 -9.02176 -8.55539 -6.05830 -4.03377 0.30605 0.97393 2.38692 2.72302 3.29522 3.37685 3.40926 3.42397 3.95867 4.19611 4.42493 4.43530 4.54066 4.60750 4.73325 4.97250 5.13259 5.15463 5.25549 5.34947 5.37314 5.38631 5.58497 5.66461 5.77177 5.91266 5.97708 6.03818 6.06345 6.23536 6.41331 6.45299 6.50240 6.64283 6.66647 6.92163 7.03951 7.06311 7.17747 7.32258 7.73013 7.81954 8.51351 8.98482 9.56200 11.06809 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.035966 B = 0.002783 C = 0.002652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 778.335201 B =10057.793414 C =10557.205320 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.049 4.049 3 C -0.128 4.128 4 C -0.003 4.003 5 C -0.510 4.510 6 H 0.080 0.920 7 C 0.067 3.933 8 N -0.902 5.902 9 Si 0.874 3.126 10 H -0.278 1.278 11 H -0.288 1.288 12 H -0.266 1.266 13 C 0.077 3.923 14 O -0.342 6.342 15 C 0.501 3.499 16 O -0.509 6.509 17 C -0.109 4.109 18 C -0.059 4.059 19 C -0.111 4.111 20 C -0.109 4.109 21 C 0.104 3.896 22 F -0.209 7.209 23 C -0.111 4.111 24 C -0.061 4.061 25 H 0.041 0.959 26 H 0.071 0.929 27 H 0.043 0.957 28 H 0.043 0.957 29 H 0.071 0.929 30 H 0.041 0.959 31 H 0.018 0.982 32 H 0.014 0.986 33 H 0.263 0.737 34 H 0.067 0.933 35 H 0.067 0.933 36 H 0.141 0.859 37 H 0.134 0.866 38 H 0.087 0.913 39 H 0.086 0.914 40 H 0.135 0.865 41 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.315 2.368 25.879 26.198 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.049 4.049 3 C -0.185 4.185 4 C -0.041 4.041 5 C -0.548 4.548 6 H 0.098 0.902 7 C -0.134 4.134 8 N -0.541 5.541 9 Si 0.702 3.298 10 H -0.203 1.203 11 H -0.214 1.214 12 H -0.191 1.191 13 C 0.004 3.996 14 O -0.258 6.258 15 C 0.346 3.654 16 O -0.399 6.399 17 C -0.110 4.110 18 C -0.078 4.078 19 C -0.129 4.129 20 C -0.110 4.110 21 C 0.049 3.951 22 F -0.190 7.190 23 C -0.129 4.129 24 C -0.079 4.079 25 H 0.060 0.940 26 H 0.090 0.910 27 H 0.062 0.938 28 H 0.062 0.938 29 H 0.090 0.910 30 H 0.060 0.940 31 H 0.037 0.963 32 H 0.032 0.968 33 H 0.073 0.927 34 H 0.085 0.915 35 H 0.085 0.915 36 H 0.159 0.841 37 H 0.152 0.848 38 H 0.105 0.895 39 H 0.104 0.896 40 H 0.152 0.848 41 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -3.080 2.093 25.647 25.916 hybrid contribution 0.770 -1.028 -0.377 1.338 sum -2.310 1.065 25.269 25.397 Atomic orbital electron populations 1.21733 0.94322 1.01057 1.01363 1.20589 0.96499 0.96259 0.91558 1.21731 0.99990 0.95385 1.01366 1.19629 0.96331 0.95559 0.92543 1.21027 1.31911 1.13426 0.88392 0.90201 1.24988 0.95694 0.96748 0.95954 1.69897 1.45858 1.40504 0.97883 0.86868 0.81330 0.83942 0.77689 1.20337 1.21404 1.19067 1.23559 0.99011 0.95972 0.81043 1.86529 1.69263 1.55516 1.14516 1.21128 0.77588 0.82001 0.84712 1.90822 1.35562 1.25258 1.88257 1.19332 1.02448 0.98070 0.91119 1.21297 0.96938 0.99090 0.90431 1.20992 0.97775 0.95552 0.98573 1.20516 0.98619 0.96394 0.95462 1.20862 0.90683 0.89610 0.93932 1.92830 1.68548 1.65708 1.91937 1.21082 1.00361 1.00127 0.91300 1.21589 0.93625 0.93108 0.99625 0.94015 0.90962 0.93785 0.93770 0.90959 0.94003 0.96347 0.96805 0.92737 0.91470 0.91474 0.84134 0.84812 0.89470 0.89570 0.84751 0.83632 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.34 8.08 37.15 0.30 -2.04 16 2 C -0.05 -0.94 0.61 -154.51 -0.09 -1.03 16 3 C -0.13 -2.35 8.08 37.16 0.30 -2.05 16 4 C 0.00 -0.07 3.11 -27.89 -0.09 -0.16 16 5 C -0.51 -13.73 8.20 -34.45 -0.28 -14.01 16 6 H 0.08 2.28 5.92 -52.48 -0.31 1.97 16 7 C 0.07 1.91 5.47 -17.82 -0.10 1.81 16 8 N -0.90 -27.18 13.96 55.43 0.77 -26.40 16 9 Si 0.87 21.46 27.47 -169.99 -4.67 16.79 16 10 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 11 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 12 H -0.27 -6.31 6.54 56.52 0.37 -5.94 16 13 C 0.08 1.35 4.33 37.16 0.16 1.51 16 14 O -0.34 -5.40 8.13 -40.52 -0.33 -5.73 16 15 C 0.50 7.59 7.90 34.61 0.27 7.86 16 16 O -0.51 -8.90 16.14 -19.24 -0.31 -9.21 16 17 C -0.11 -1.30 5.87 -104.98 -0.62 -1.92 16 18 C -0.06 -0.61 9.60 -39.17 -0.38 -0.98 16 19 C -0.11 -0.89 9.68 -39.64 -0.38 -1.27 16 20 C -0.11 -0.84 5.60 -104.53 -0.59 -1.43 16 21 C 0.10 0.58 7.67 36.01 0.28 0.85 16 22 F -0.21 -1.83 17.34 2.25 0.04 -1.79 16 23 C -0.11 -0.90 9.68 -39.64 -0.38 -1.29 16 24 C -0.06 -0.62 9.62 -39.17 -0.38 -1.00 16 25 H 0.04 0.67 7.68 -51.93 -0.40 0.27 16 26 H 0.07 1.45 6.62 -51.93 -0.34 1.11 16 27 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 28 H 0.04 0.80 8.14 -51.93 -0.42 0.37 16 29 H 0.07 1.46 6.62 -51.93 -0.34 1.12 16 30 H 0.04 0.67 7.68 -51.93 -0.40 0.28 16 31 H 0.02 0.43 7.20 -51.93 -0.37 0.06 16 32 H 0.01 0.32 7.57 -51.93 -0.39 -0.08 16 33 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 34 H 0.07 1.18 8.14 -51.93 -0.42 0.75 16 35 H 0.07 1.17 8.14 -51.93 -0.42 0.74 16 36 H 0.14 1.39 7.65 -52.49 -0.40 0.99 16 37 H 0.13 0.74 8.06 -52.49 -0.42 0.31 16 38 H 0.09 0.31 8.08 -51.93 -0.42 -0.11 16 39 H 0.09 0.30 8.08 -51.93 -0.42 -0.12 16 40 H 0.13 0.79 8.06 -52.49 -0.42 0.36 16 41 H 0.15 1.41 7.61 -52.48 -0.40 1.01 16 LS Contribution 344.98 15.07 5.20 5.20 Total: -1.00 -31.53 344.98 -7.18 -38.71 By element: Atomic # 1 Polarization: 3.50 SS G_CDS: -5.91 Total: -2.41 kcal Atomic # 6 Polarization: -13.17 SS G_CDS: -1.97 Total: -15.15 kcal Atomic # 7 Polarization: -27.18 SS G_CDS: 0.77 Total: -26.40 kcal Atomic # 8 Polarization: -14.31 SS G_CDS: -0.64 Total: -14.95 kcal Atomic # 9 Polarization: -1.83 SS G_CDS: 0.04 Total: -1.79 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -4.67 Total: 16.79 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -31.53 -7.18 -38.71 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001122976267.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.509 kcal (2) G-P(sol) polarization free energy of solvation -31.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.043 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.177 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.711 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.219 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds