Wall clock time and date at job start Tue Mar 31 2020 06:35:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53008 * 109.47139 * 2 1 4 4 C 1.53002 * 109.47102 * 240.00379 * 2 1 3 5 5 C 1.50688 * 109.47393 * 60.00017 * 4 2 1 6 6 H 1.08005 * 120.00149 * 359.97438 * 5 4 2 7 7 C 1.37877 * 120.00267 * 180.02562 * 5 4 2 8 8 N 1.31517 * 120.00414 * 180.02562 * 7 5 4 9 9 Si 1.86803 * 119.99913 * 359.97438 * 7 5 4 10 10 H 1.48500 * 109.46934 * 90.00155 * 9 7 5 11 11 H 1.48497 * 109.47596 * 210.00592 * 9 7 5 12 12 H 1.48500 * 109.46894 * 330.00393 * 9 7 5 13 13 C 1.52998 * 109.47229 * 119.99905 * 2 1 3 14 14 O 1.45195 * 109.47162 * 300.00181 * 13 2 1 15 15 C 1.34710 * 116.99984 * 179.97438 * 14 13 2 16 16 O 1.21466 * 120.00124 * 359.97438 * 15 14 13 17 17 C 1.47729 * 119.99946 * 179.97438 * 15 14 13 18 18 C 1.39626 * 120.14826 * 179.97438 * 17 15 14 19 19 C 1.37948 * 119.84909 * 180.02562 * 18 17 15 20 20 C 1.38373 * 120.14589 * 0.02562 * 19 18 17 21 21 C 1.50701 * 119.84512 * 179.97438 * 20 19 18 22 22 F 1.39898 * 109.47041 * 90.00037 * 21 20 19 23 23 C 1.38363 * 120.30474 * 0.23429 * 20 19 18 24 24 C 1.37946 * 120.14835 * 359.48871 * 23 20 19 25 25 H 1.09003 * 109.46911 * 300.00199 * 1 2 3 26 26 H 1.09006 * 109.47145 * 59.99445 * 1 2 3 27 27 H 1.08992 * 109.47194 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.46736 * 180.02562 * 3 2 1 29 29 H 1.08996 * 109.46895 * 299.99974 * 3 2 1 30 30 H 1.08994 * 109.47126 * 59.99906 * 3 2 1 31 31 H 1.09007 * 109.46920 * 180.02562 * 4 2 1 32 32 H 1.09000 * 109.46678 * 299.99305 * 4 2 1 33 33 H 0.96999 * 119.99843 * 179.97438 * 8 7 5 34 34 H 1.09002 * 109.47023 * 180.02562 * 13 2 1 35 35 H 1.09006 * 109.46833 * 59.99902 * 13 2 1 36 36 H 1.07998 * 120.07953 * 0.02562 * 18 17 15 37 37 H 1.07994 * 119.92892 * 180.02562 * 19 18 17 38 38 H 1.09002 * 109.47060 * 210.00222 * 21 20 19 39 39 H 1.09001 * 109.47380 * 330.00310 * 21 20 19 40 40 H 1.07999 * 119.92340 * 179.72472 * 23 20 19 41 41 H 1.08007 * 120.07618 * 180.25656 * 24 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 1.5377 -0.0108 -2.4797 6 1 0.9164 0.8671 -2.3806 7 6 1.8703 -0.4821 -3.7320 8 7 1.4324 0.1382 -4.8058 9 14 2.9443 -2.0009 -3.9034 10 1 2.0857 -3.2117 -3.9483 11 1 3.7359 -1.9086 -5.1564 12 1 3.8650 -2.0897 -2.7417 13 6 2.0400 -0.7212 1.2492 14 8 1.5560 -0.0368 2.4347 15 6 1.9175 -0.5490 3.6271 16 8 2.6175 -1.5405 3.6751 17 6 1.4626 0.0952 4.8763 18 6 1.8351 -0.4333 6.1138 19 6 1.4064 0.1729 7.2764 20 6 0.6086 1.3020 7.2180 21 6 0.1436 1.9584 8.4924 22 9 1.0769 2.9227 8.8876 23 6 0.2314 1.8279 5.9951 24 6 0.6577 1.2350 4.8248 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 3.1299 1.4425 -0.0005 29 1 1.6766 1.9564 -0.8900 30 1 1.6767 1.9564 0.8899 31 1 3.1300 -0.7216 -1.2490 32 1 1.6767 -1.7489 -1.2492 33 1 1.6668 -0.1932 -5.6868 34 1 3.1300 -0.7208 1.2494 35 1 1.6766 -1.7489 1.2492 36 1 2.4574 -1.3147 6.1607 37 1 1.6940 -0.2346 8.2342 38 1 -0.8222 2.4350 8.3241 39 1 0.0459 1.2054 9.2744 40 1 -0.3951 2.7067 5.9567 41 1 0.3659 1.6489 3.8708 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001122976267.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:35:00 Heat of formation + Delta-G solvation = -147.145674 kcal Electronic energy + Delta-G solvation = -22876.739867 eV Core-core repulsion = 19248.712746 eV Total energy + Delta-G solvation = -3628.027122 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.142 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -48.58720 -41.72105 -40.01144 -38.70096 -36.94255 -34.42789 -33.56840 -32.11440 -29.99056 -28.64503 -28.00090 -27.43864 -24.82362 -23.76036 -23.64932 -21.69375 -19.92750 -19.07786 -18.91185 -18.03103 -17.50203 -17.18472 -16.89852 -16.75812 -16.25591 -15.73739 -15.52501 -15.40635 -15.33021 -14.85988 -14.50524 -14.30384 -14.23209 -14.17325 -13.67593 -13.56434 -13.06111 -12.87915 -12.70572 -12.34743 -12.30154 -12.19935 -12.13901 -11.88677 -11.83651 -11.82448 -11.65220 -11.38687 -11.23061 -10.96168 -10.72453 -10.13848 -10.06761 -8.23903 -6.24879 -0.49734 0.30350 1.35036 1.37525 1.38741 1.47375 1.55682 2.37520 2.64613 3.10891 3.37401 3.60108 3.70203 3.86523 3.90018 3.90679 4.09906 4.13500 4.15658 4.33640 4.43939 4.51857 4.54536 4.64379 4.66047 4.81254 4.94793 4.97414 4.97758 5.08805 5.10885 5.22919 5.25813 5.35712 5.36459 5.37755 5.39170 5.51783 5.62143 5.73116 5.75405 6.35501 6.61198 6.81756 7.37523 8.91700 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.035966 B = 0.002783 C = 0.002652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 778.335201 B =10057.793414 C =10557.205320 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.048 4.048 3 C -0.122 4.122 4 C -0.004 4.004 5 C -0.503 4.503 6 H 0.052 0.948 7 C 0.006 3.994 8 N -0.950 5.950 9 Si 0.935 3.065 10 H -0.270 1.270 11 H -0.287 1.287 12 H -0.251 1.251 13 C 0.086 3.914 14 O -0.340 6.340 15 C 0.501 3.499 16 O -0.540 6.540 17 C -0.134 4.134 18 C -0.068 4.068 19 C -0.108 4.108 20 C -0.104 4.104 21 C 0.100 3.900 22 F -0.227 7.227 23 C -0.110 4.110 24 C -0.067 4.067 25 H 0.066 0.934 26 H 0.046 0.954 27 H 0.045 0.955 28 H 0.044 0.956 29 H 0.046 0.954 30 H 0.066 0.934 31 H 0.018 0.982 32 H 0.017 0.983 33 H 0.264 0.736 34 H 0.065 0.935 35 H 0.067 0.933 36 H 0.137 0.863 37 H 0.162 0.838 38 H 0.112 0.888 39 H 0.112 0.888 40 H 0.160 0.840 41 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.539 2.197 28.973 29.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.048 4.048 3 C -0.179 4.179 4 C -0.041 4.041 5 C -0.541 4.541 6 H 0.070 0.930 7 C -0.190 4.190 8 N -0.591 5.591 9 Si 0.760 3.240 10 H -0.195 1.195 11 H -0.213 1.213 12 H -0.175 1.175 13 C 0.012 3.988 14 O -0.256 6.256 15 C 0.348 3.652 16 O -0.432 6.432 17 C -0.135 4.135 18 C -0.086 4.086 19 C -0.125 4.125 20 C -0.105 4.105 21 C 0.045 3.955 22 F -0.209 7.209 23 C -0.128 4.128 24 C -0.085 4.085 25 H 0.085 0.915 26 H 0.065 0.935 27 H 0.065 0.935 28 H 0.063 0.937 29 H 0.065 0.935 30 H 0.085 0.915 31 H 0.036 0.964 32 H 0.035 0.965 33 H 0.073 0.927 34 H 0.084 0.916 35 H 0.086 0.914 36 H 0.155 0.845 37 H 0.179 0.821 38 H 0.130 0.870 39 H 0.130 0.870 40 H 0.178 0.822 41 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -3.309 1.928 28.768 29.022 hybrid contribution 0.761 -0.879 -1.216 1.682 sum -2.549 1.049 27.552 27.690 Atomic orbital electron populations 1.21656 0.93698 1.01205 1.01306 1.20453 0.96988 0.96338 0.90989 1.21656 1.00004 0.94932 1.01294 1.19579 0.96161 0.95633 0.92726 1.21290 1.30498 1.12409 0.89948 0.92999 1.25833 0.97404 0.99985 0.95772 1.70038 1.47999 1.42623 0.98470 0.85884 0.79840 0.80271 0.78027 1.19537 1.21323 1.17501 1.23228 0.98793 0.95677 0.81107 1.86511 1.69281 1.55310 1.14476 1.21733 0.76791 0.81607 0.85058 1.90799 1.37159 1.26721 1.88495 1.19291 1.04689 0.99516 0.89998 1.21399 0.97261 0.99325 0.90653 1.21318 0.97002 0.95385 0.98843 1.20886 0.97338 0.95830 0.96423 1.21151 0.90914 0.89967 0.93432 1.92797 1.69466 1.66564 1.92034 1.21406 1.00073 1.00557 0.90738 1.21672 0.93516 0.92679 1.00648 0.91509 0.93481 0.93541 0.93665 0.93456 0.91544 0.96381 0.96455 0.92746 0.91619 0.91431 0.84507 0.82094 0.87027 0.86980 0.82215 0.83562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.39 8.08 71.98 0.58 -3.81 16 2 C -0.05 -1.80 0.61 -52.18 -0.03 -1.83 16 3 C -0.12 -4.44 8.08 71.98 0.58 -3.86 16 4 C 0.00 -0.16 3.11 29.85 0.09 -0.07 16 5 C -0.50 -27.65 8.20 25.60 0.21 -27.44 16 6 H 0.05 3.08 5.92 -2.91 -0.02 3.07 16 7 C 0.01 0.37 5.47 84.65 0.46 0.84 16 8 N -0.95 -58.75 13.96 21.45 0.30 -58.45 16 9 Si 0.93 44.27 27.47 68.60 1.88 46.16 16 10 H -0.27 -12.39 7.11 99.48 0.71 -11.69 16 11 H -0.29 -13.48 7.11 99.48 0.71 -12.77 16 12 H -0.25 -11.19 6.54 99.48 0.65 -10.54 16 13 C 0.09 2.90 4.33 71.98 0.31 3.21 16 14 O -0.34 -10.37 8.13 -56.20 -0.46 -10.82 16 15 C 0.50 14.90 7.90 70.33 0.56 15.46 16 16 O -0.54 -18.83 16.14 19.95 0.32 -18.51 16 17 C -0.13 -3.07 5.87 -20.10 -0.12 -3.19 16 18 C -0.07 -1.30 9.60 22.54 0.22 -1.09 16 19 C -0.11 -1.43 9.68 22.23 0.22 -1.21 16 20 C -0.10 -1.25 5.60 -19.80 -0.11 -1.36 16 21 C 0.10 0.70 7.67 71.24 0.55 1.25 16 22 F -0.23 -3.27 17.34 44.97 0.78 -2.49 16 23 C -0.11 -1.47 9.68 22.23 0.22 -1.25 16 24 C -0.07 -1.23 9.62 22.54 0.22 -1.02 16 25 H 0.07 2.05 7.68 -2.39 -0.02 2.03 16 26 H 0.05 1.92 6.62 -2.38 -0.02 1.91 16 27 H 0.05 1.62 8.14 -2.39 -0.02 1.61 16 28 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 29 H 0.05 1.95 6.62 -2.39 -0.02 1.93 16 30 H 0.07 2.07 7.68 -2.39 -0.02 2.05 16 31 H 0.02 0.82 7.20 -2.38 -0.02 0.81 16 32 H 0.02 0.78 7.57 -2.39 -0.02 0.76 16 33 H 0.26 15.36 8.31 -92.71 -0.77 14.59 16 34 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 35 H 0.07 2.28 8.14 -2.38 -0.02 2.27 16 36 H 0.14 2.63 7.65 -2.91 -0.02 2.61 16 37 H 0.16 1.19 8.06 -2.91 -0.02 1.17 16 38 H 0.11 0.28 8.08 -2.39 -0.02 0.26 16 39 H 0.11 0.25 8.08 -2.39 -0.02 0.23 16 40 H 0.16 1.27 8.06 -2.91 -0.02 1.24 16 41 H 0.15 2.58 7.61 -2.91 -0.02 2.56 16 Total: -1.00 -69.33 344.98 7.74 -61.59 By element: Atomic # 1 Polarization: 6.94 SS G_CDS: 0.97 Total: 7.90 kcal Atomic # 6 Polarization: -29.32 SS G_CDS: 3.94 Total: -25.38 kcal Atomic # 7 Polarization: -58.75 SS G_CDS: 0.30 Total: -58.45 kcal Atomic # 8 Polarization: -29.20 SS G_CDS: -0.14 Total: -29.33 kcal Atomic # 9 Polarization: -3.27 SS G_CDS: 0.78 Total: -2.49 kcal Atomic # 14 Polarization: 44.27 SS G_CDS: 1.88 Total: 46.16 kcal Total: -69.33 7.74 -61.59 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001122976267.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.551 kcal (2) G-P(sol) polarization free energy of solvation -69.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.884 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.739 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.595 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds