Wall clock time and date at job start Tue Mar 31 2020 06:43:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53005 * 109.47127 * 2 1 4 4 C 1.52997 * 109.47127 * 180.02562 * 3 2 1 5 5 N 1.46497 * 109.47207 * 179.97438 * 4 3 2 6 6 C 1.37090 * 120.00728 * 264.54046 * 5 4 3 7 7 H 1.08000 * 120.00256 * 146.01337 * 6 5 4 8 8 C 1.38953 * 120.00086 * 326.01748 * 6 5 4 9 9 N 1.31415 * 119.99693 * 337.80340 * 8 6 5 10 10 Si 1.86797 * 120.00421 * 157.80362 * 8 6 5 11 11 H 1.48503 * 109.46895 * 89.99911 * 10 8 6 12 12 H 1.48495 * 109.47175 * 209.99875 * 10 8 6 13 13 H 1.48506 * 109.46869 * 330.00277 * 10 8 6 14 14 C 1.34784 * 119.99614 * 84.54240 * 5 4 3 15 15 O 1.21296 * 119.99681 * 359.97438 * 14 5 4 16 16 C 1.50696 * 120.00298 * 180.02562 * 14 5 4 17 17 N 1.46503 * 109.47454 * 179.97438 * 16 14 5 18 18 C 1.34774 * 119.99833 * 179.97438 * 17 16 14 19 19 O 1.21696 * 120.00424 * 0.02562 * 18 17 16 20 20 C 1.46659 * 119.99873 * 179.97438 * 18 17 16 21 21 C 1.36537 * 125.98820 * 179.97438 * 20 18 17 22 22 C 1.40363 * 106.70609 * 180.02562 * 21 20 18 23 23 C 1.35132 * 107.11709 * 0.02562 * 22 21 20 24 24 O 1.33931 * 108.76486 * 0.02562 * 23 22 21 25 25 H 1.08995 * 109.47288 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.47314 * 300.00491 * 1 2 3 27 27 H 1.09007 * 109.47461 * 59.99946 * 1 2 3 28 28 H 1.09001 * 109.47235 * 240.00024 * 2 1 3 29 29 H 1.08996 * 109.47222 * 119.99628 * 2 1 3 30 30 H 1.08997 * 109.47425 * 59.99576 * 3 2 1 31 31 H 1.09005 * 109.46907 * 299.99797 * 3 2 1 32 32 H 1.09005 * 109.46795 * 59.99853 * 4 3 2 33 33 H 1.08994 * 109.47320 * 300.00406 * 4 3 2 34 34 H 0.96994 * 120.00193 * 180.02562 * 9 8 6 35 35 H 1.09000 * 109.46912 * 59.99478 * 16 14 5 36 36 H 1.09008 * 109.46743 * 300.00100 * 16 14 5 37 37 H 0.96996 * 119.99282 * 359.97438 * 17 16 14 38 38 H 1.07996 * 126.64696 * 0.02562 * 21 20 18 39 39 H 1.08006 * 126.44310 * 180.02562 * 22 21 20 40 40 H 1.08004 * 125.61403 * 180.26024 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 7 4.0583 2.8237 -0.0013 6 6 4.3928 3.4321 -1.1833 7 1 4.2231 4.4908 -1.3128 8 6 4.9502 2.6866 -2.2151 9 7 5.5541 1.5495 -1.9520 10 14 4.8411 3.3007 -3.9758 11 1 6.0244 4.1449 -4.2798 12 1 4.8085 2.1415 -4.9033 13 1 3.6035 4.1042 -4.1440 14 6 4.1787 3.4964 1.1605 15 8 3.8823 2.9582 2.2064 16 6 4.6805 4.9173 1.1600 17 7 4.7195 5.4220 2.5348 18 6 5.1392 6.6792 2.7794 19 8 5.4853 7.3953 1.8584 20 6 5.1777 7.1846 4.1556 21 6 5.5797 8.4311 4.5416 22 6 5.4553 8.4805 5.9388 23 6 4.9892 7.2771 6.3395 24 8 4.8241 6.4986 5.2622 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3634 0.5139 0.8899 27 1 -0.3634 0.5139 -0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.6766 1.9564 0.8899 31 1 1.6766 1.9564 -0.8901 32 1 3.9329 0.9288 -0.8909 33 1 3.9337 0.9285 0.8890 34 1 5.9435 1.0292 -2.6721 35 1 4.0119 5.5385 0.5641 36 1 5.6828 4.9485 0.7325 37 1 4.4433 4.8513 3.2688 38 1 5.9263 9.2251 3.8968 39 1 5.6883 9.3222 6.5743 40 1 4.7803 6.9915 7.3599 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001142118104.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:43:23 Heat of formation + Delta-G solvation = -63.755107 kcal Electronic energy + Delta-G solvation = -23308.527515 eV Core-core repulsion = 19704.036442 eV Total energy + Delta-G solvation = -3604.491074 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.68237 -39.41657 -38.41025 -35.60982 -34.04110 -34.02692 -33.02868 -31.63264 -30.25125 -28.89295 -26.84520 -24.98464 -23.35366 -22.25152 -21.73555 -20.49091 -20.12240 -19.34755 -18.64904 -16.98998 -16.36748 -16.33680 -15.66339 -15.38817 -15.04824 -14.72231 -14.46072 -14.33604 -13.88912 -13.64799 -13.19478 -13.04702 -13.03250 -12.69956 -12.39428 -12.30377 -12.08633 -11.75963 -11.45950 -11.27717 -10.98511 -10.64243 -10.54171 -10.39473 -10.28539 -10.12291 -10.11948 -9.78426 -9.19763 -8.93113 -8.64399 -8.59848 -7.65985 -6.49476 -4.16867 1.09924 2.30616 2.71081 3.06678 3.18146 3.22239 3.34840 3.43070 3.72016 4.04282 4.63586 4.73560 4.83497 4.88401 5.04177 5.45396 5.47393 5.58192 5.62995 5.69224 5.83038 5.94693 6.06328 6.09659 6.21781 6.25090 6.27076 6.34052 6.37392 6.51677 6.61735 6.67915 6.79559 6.82363 7.05341 7.28342 7.40599 7.74541 7.82342 8.24256 8.33887 8.93888 9.33426 9.76360 10.51508 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.015044 B = 0.003999 C = 0.003311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1860.798411 B = 7000.111694 C = 8454.070836 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.119 4.119 3 C -0.129 4.129 4 C 0.114 3.886 5 N -0.425 5.425 6 C -0.351 4.351 7 H 0.094 0.906 8 C 0.049 3.951 9 N -0.852 5.852 10 Si 0.914 3.086 11 H -0.274 1.274 12 H -0.281 1.281 13 H -0.267 1.267 14 C 0.456 3.544 15 O -0.607 6.607 16 C 0.117 3.883 17 N -0.698 5.698 18 C 0.596 3.404 19 O -0.527 6.527 20 C -0.066 4.066 21 C -0.129 4.129 22 C -0.227 4.227 23 C -0.013 4.013 24 O -0.160 6.160 25 H 0.047 0.953 26 H 0.050 0.950 27 H 0.051 0.949 28 H 0.059 0.941 29 H 0.057 0.943 30 H 0.053 0.947 31 H 0.058 0.942 32 H 0.109 0.891 33 H 0.053 0.947 34 H 0.272 0.728 35 H 0.089 0.911 36 H 0.098 0.902 37 H 0.413 0.587 38 H 0.160 0.840 39 H 0.155 0.845 40 H 0.208 0.792 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.167 5.585 9.301 11.302 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.157 4.157 3 C -0.167 4.167 4 C -0.009 4.009 5 N -0.141 5.141 6 C -0.478 4.478 7 H 0.112 0.888 8 C -0.159 4.159 9 N -0.488 5.488 10 Si 0.740 3.260 11 H -0.200 1.200 12 H -0.206 1.206 13 H -0.191 1.191 14 C 0.244 3.756 15 O -0.494 6.494 16 C -0.009 4.009 17 N -0.350 5.350 18 C 0.381 3.619 19 O -0.406 6.406 20 C -0.119 4.119 21 C -0.150 4.150 22 C -0.246 4.246 23 C -0.083 4.083 24 O -0.055 6.055 25 H 0.066 0.934 26 H 0.069 0.931 27 H 0.070 0.930 28 H 0.078 0.922 29 H 0.076 0.924 30 H 0.072 0.928 31 H 0.077 0.923 32 H 0.126 0.874 33 H 0.071 0.929 34 H 0.082 0.918 35 H 0.107 0.893 36 H 0.116 0.884 37 H 0.251 0.749 38 H 0.177 0.823 39 H 0.172 0.828 40 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges -3.080 5.283 8.959 10.847 hybrid contribution -0.016 0.207 -0.510 0.550 sum -3.097 5.490 8.449 10.541 Atomic orbital electron populations 1.21756 0.96605 1.00706 1.01500 1.21423 0.95008 0.97658 1.01629 1.21907 0.97725 0.95629 1.01451 1.21484 0.91210 0.84397 1.03791 1.43408 1.53978 1.12057 1.04679 1.19504 1.42176 0.95649 0.90500 0.88806 1.25336 0.93774 0.96141 1.00612 1.69939 1.30564 1.14815 1.33472 0.86142 0.79261 0.78648 0.81979 1.20000 1.20619 1.19143 1.20165 0.82724 0.88455 0.84263 1.90515 1.56867 1.70420 1.31625 1.21002 1.03790 0.94343 0.81748 1.45760 1.64807 1.13445 1.11028 1.16518 0.78505 0.82103 0.84752 1.90876 1.49731 1.57457 1.42537 1.22242 1.09667 0.93324 0.86617 1.21944 1.01108 0.96565 0.95340 1.21834 1.08107 0.99469 0.95225 1.24394 1.02137 0.90417 0.91311 1.84123 1.65999 1.40904 1.14484 0.93396 0.93080 0.93022 0.92228 0.92382 0.92773 0.92287 0.87354 0.92861 0.91786 0.89317 0.88398 0.74868 0.82259 0.82753 0.77505 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.05 9.91 37.16 0.37 -1.69 16 2 C -0.12 -1.95 5.93 -26.73 -0.16 -2.11 16 3 C -0.13 -2.54 5.50 -26.73 -0.15 -2.69 16 4 C 0.11 2.64 4.90 -4.05 -0.02 2.62 16 5 N -0.42 -10.32 2.56 -114.82 -0.29 -10.61 16 6 C -0.35 -8.60 8.70 -14.94 -0.13 -8.73 16 7 H 0.09 2.21 6.97 -52.49 -0.37 1.84 16 8 C 0.05 1.18 4.92 -17.46 -0.09 1.09 16 9 N -0.85 -21.68 11.34 55.50 0.63 -21.05 16 10 Si 0.91 18.94 29.61 -169.99 -5.03 13.91 16 11 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 12 H -0.28 -5.79 7.11 56.52 0.40 -5.39 16 13 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 14 C 0.46 10.72 7.67 -10.98 -0.08 10.64 16 15 O -0.61 -15.07 15.34 5.54 0.09 -14.99 16 16 C 0.12 2.43 4.81 -5.19 -0.02 2.40 16 17 N -0.70 -13.11 5.52 -62.80 -0.35 -13.45 16 18 C 0.60 10.82 7.79 -12.86 -0.10 10.72 16 19 O -0.53 -10.79 16.86 5.19 0.09 -10.71 16 20 C -0.07 -1.01 7.13 -36.80 -0.26 -1.27 16 21 C -0.13 -1.67 10.62 -39.40 -0.42 -2.09 16 22 C -0.23 -2.29 10.87 -39.89 -0.43 -2.72 16 23 C -0.01 -0.12 12.08 29.63 0.36 0.23 16 24 O -0.16 -2.20 10.40 5.00 0.05 -2.14 16 25 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 27 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 29 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 30 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 31 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 32 H 0.11 2.64 5.35 -51.93 -0.28 2.36 16 33 H 0.05 1.28 7.59 -51.93 -0.39 0.88 16 34 H 0.27 6.52 8.31 -40.82 -0.34 6.18 16 35 H 0.09 1.79 7.65 -51.93 -0.40 1.39 16 36 H 0.10 2.09 8.10 -51.92 -0.42 1.67 16 37 H 0.41 7.65 7.19 -40.82 -0.29 7.35 16 38 H 0.16 1.91 8.06 -52.49 -0.42 1.49 16 39 H 0.15 1.09 8.06 -52.48 -0.42 0.66 16 40 H 0.21 1.10 8.06 -52.48 -0.42 0.68 16 LS Contribution 346.11 15.07 5.22 5.22 Total: -1.00 -29.24 346.11 -6.25 -35.49 By element: Atomic # 1 Polarization: 17.46 SS G_CDS: -5.51 Total: 11.95 kcal Atomic # 6 Polarization: 7.54 SS G_CDS: -1.14 Total: 6.40 kcal Atomic # 7 Polarization: -45.11 SS G_CDS: -0.01 Total: -45.12 kcal Atomic # 8 Polarization: -28.06 SS G_CDS: 0.22 Total: -27.84 kcal Atomic # 14 Polarization: 18.94 SS G_CDS: -5.03 Total: 13.91 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -29.24 -6.25 -35.49 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001142118104.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.265 kcal (2) G-P(sol) polarization free energy of solvation -29.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.255 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.490 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.755 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds