Wall clock time and date at job start Tue Mar 31 2020 06:43:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53005 * 109.47127 * 2 1 4 4 C 1.52997 * 109.47127 * 180.02562 * 3 2 1 5 5 N 1.46497 * 109.47207 * 179.97438 * 4 3 2 6 6 C 1.37090 * 120.00728 * 264.54046 * 5 4 3 7 7 H 1.08000 * 120.00256 * 146.01337 * 6 5 4 8 8 C 1.38953 * 120.00086 * 326.01748 * 6 5 4 9 9 N 1.31415 * 119.99693 * 337.80340 * 8 6 5 10 10 Si 1.86797 * 120.00421 * 157.80362 * 8 6 5 11 11 H 1.48503 * 109.46895 * 89.99911 * 10 8 6 12 12 H 1.48495 * 109.47175 * 209.99875 * 10 8 6 13 13 H 1.48506 * 109.46869 * 330.00277 * 10 8 6 14 14 C 1.34784 * 119.99614 * 84.54240 * 5 4 3 15 15 O 1.21296 * 119.99681 * 359.97438 * 14 5 4 16 16 C 1.50696 * 120.00298 * 180.02562 * 14 5 4 17 17 N 1.46503 * 109.47454 * 179.97438 * 16 14 5 18 18 C 1.34774 * 119.99833 * 179.97438 * 17 16 14 19 19 O 1.21696 * 120.00424 * 0.02562 * 18 17 16 20 20 C 1.46659 * 119.99873 * 179.97438 * 18 17 16 21 21 C 1.36537 * 125.98820 * 179.97438 * 20 18 17 22 22 C 1.40363 * 106.70609 * 180.02562 * 21 20 18 23 23 C 1.35132 * 107.11709 * 0.02562 * 22 21 20 24 24 O 1.33931 * 108.76486 * 0.02562 * 23 22 21 25 25 H 1.08995 * 109.47288 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.47314 * 300.00491 * 1 2 3 27 27 H 1.09007 * 109.47461 * 59.99946 * 1 2 3 28 28 H 1.09001 * 109.47235 * 240.00024 * 2 1 3 29 29 H 1.08996 * 109.47222 * 119.99628 * 2 1 3 30 30 H 1.08997 * 109.47425 * 59.99576 * 3 2 1 31 31 H 1.09005 * 109.46907 * 299.99797 * 3 2 1 32 32 H 1.09005 * 109.46795 * 59.99853 * 4 3 2 33 33 H 1.08994 * 109.47320 * 300.00406 * 4 3 2 34 34 H 0.96994 * 120.00193 * 180.02562 * 9 8 6 35 35 H 1.09000 * 109.46912 * 59.99478 * 16 14 5 36 36 H 1.09008 * 109.46743 * 300.00100 * 16 14 5 37 37 H 0.96996 * 119.99282 * 359.97438 * 17 16 14 38 38 H 1.07996 * 126.64696 * 0.02562 * 21 20 18 39 39 H 1.08006 * 126.44310 * 180.02562 * 22 21 20 40 40 H 1.08004 * 125.61403 * 180.26024 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 7 4.0583 2.8237 -0.0013 6 6 4.3928 3.4321 -1.1833 7 1 4.2231 4.4908 -1.3128 8 6 4.9502 2.6866 -2.2151 9 7 5.5541 1.5495 -1.9520 10 14 4.8411 3.3007 -3.9758 11 1 6.0244 4.1449 -4.2798 12 1 4.8085 2.1415 -4.9033 13 1 3.6035 4.1042 -4.1440 14 6 4.1787 3.4964 1.1605 15 8 3.8823 2.9582 2.2064 16 6 4.6805 4.9173 1.1600 17 7 4.7195 5.4220 2.5348 18 6 5.1392 6.6792 2.7794 19 8 5.4853 7.3953 1.8584 20 6 5.1777 7.1846 4.1556 21 6 5.5797 8.4311 4.5416 22 6 5.4553 8.4805 5.9388 23 6 4.9892 7.2771 6.3395 24 8 4.8241 6.4986 5.2622 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3634 0.5139 0.8899 27 1 -0.3634 0.5139 -0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.6766 1.9564 0.8899 31 1 1.6766 1.9564 -0.8901 32 1 3.9329 0.9288 -0.8909 33 1 3.9337 0.9285 0.8890 34 1 5.9435 1.0292 -2.6721 35 1 4.0119 5.5385 0.5641 36 1 5.6828 4.9485 0.7325 37 1 4.4433 4.8513 3.2688 38 1 5.9263 9.2251 3.8968 39 1 5.6883 9.3222 6.5743 40 1 4.7803 6.9915 7.3599 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001142118104.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:43:22 Heat of formation + Delta-G solvation = -82.126841 kcal Electronic energy + Delta-G solvation = -23309.324174 eV Core-core repulsion = 19704.036442 eV Total energy + Delta-G solvation = -3605.287732 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -43.64757 -41.05960 -40.08681 -37.36465 -35.67359 -35.51432 -34.01954 -33.51922 -31.44022 -30.34492 -28.36740 -26.83590 -24.72086 -23.61289 -22.67428 -21.97709 -21.42603 -21.14406 -19.99997 -18.61233 -17.85204 -17.45542 -17.10709 -17.04406 -16.66200 -16.29975 -16.07463 -15.87718 -15.48795 -15.12225 -14.60440 -14.18697 -14.10177 -13.91333 -13.83792 -13.65292 -13.53757 -13.40555 -13.13373 -12.99914 -12.70737 -12.17564 -12.06901 -11.96691 -11.82874 -11.58303 -11.43438 -11.04622 -11.04295 -10.54175 -10.39729 -9.66438 -9.56486 -8.37251 -6.11133 0.01220 1.38936 1.43577 1.48667 1.59389 1.63628 1.85641 2.06177 2.10248 2.31709 2.91070 3.01185 3.70148 3.96983 3.98848 4.09652 4.11699 4.26056 4.32806 4.40506 4.50829 4.56633 4.62488 4.84523 4.87217 4.91682 4.94867 4.99497 5.02443 5.11161 5.18127 5.35548 5.41692 5.42282 5.43337 5.56101 5.84491 5.90505 6.33148 6.38973 6.89441 7.03040 7.44304 7.86813 8.64709 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.015044 B = 0.003999 C = 0.003311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1860.798411 B = 7000.111694 C = 8454.070836 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.115 4.115 3 C -0.116 4.116 4 C 0.116 3.884 5 N -0.435 5.435 6 C -0.368 4.368 7 H 0.100 0.900 8 C 0.012 3.988 9 N -0.882 5.882 10 Si 0.980 3.020 11 H -0.273 1.273 12 H -0.277 1.277 13 H -0.261 1.261 14 C 0.447 3.553 15 O -0.625 6.625 16 C 0.131 3.869 17 N -0.700 5.700 18 C 0.598 3.402 19 O -0.560 6.560 20 C -0.112 4.112 21 C -0.118 4.118 22 C -0.230 4.230 23 C 0.009 3.991 24 O -0.178 6.178 25 H 0.070 0.930 26 H 0.051 0.949 27 H 0.055 0.945 28 H 0.062 0.938 29 H 0.058 0.942 30 H 0.041 0.959 31 H 0.055 0.945 32 H 0.096 0.904 33 H 0.034 0.966 34 H 0.276 0.724 35 H 0.092 0.908 36 H 0.088 0.912 37 H 0.414 0.586 38 H 0.164 0.836 39 H 0.191 0.809 40 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.901 6.471 10.289 12.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.154 4.154 3 C -0.155 4.155 4 C -0.008 4.008 5 N -0.151 5.151 6 C -0.495 4.495 7 H 0.117 0.883 8 C -0.193 4.193 9 N -0.519 5.519 10 Si 0.803 3.197 11 H -0.199 1.199 12 H -0.202 1.202 13 H -0.185 1.185 14 C 0.236 3.764 15 O -0.514 6.514 16 C 0.004 3.996 17 N -0.352 5.352 18 C 0.386 3.614 19 O -0.442 6.442 20 C -0.164 4.164 21 C -0.139 4.139 22 C -0.248 4.248 23 C -0.061 4.061 24 O -0.073 6.073 25 H 0.089 0.911 26 H 0.070 0.930 27 H 0.074 0.926 28 H 0.080 0.920 29 H 0.077 0.923 30 H 0.060 0.940 31 H 0.073 0.927 32 H 0.114 0.886 33 H 0.053 0.947 34 H 0.085 0.915 35 H 0.110 0.890 36 H 0.106 0.894 37 H 0.252 0.748 38 H 0.181 0.819 39 H 0.208 0.792 40 H 0.272 0.728 Dipole moment (debyes) X Y Z Total from point charges -3.820 6.171 9.958 12.322 hybrid contribution 0.264 -0.038 -0.641 0.694 sum -3.556 6.133 9.317 11.708 Atomic orbital electron populations 1.21713 0.94183 1.02357 1.01776 1.21407 0.97089 0.95057 1.01809 1.21781 0.95209 0.97950 1.00529 1.21472 0.93356 0.83820 1.02103 1.43653 1.54026 1.12457 1.05001 1.19801 1.42722 0.96193 0.90819 0.88282 1.26131 0.92974 0.96165 1.03989 1.70023 1.31196 1.15930 1.34709 0.85143 0.79259 0.78136 0.77157 1.19875 1.20189 1.18495 1.20590 0.82476 0.89448 0.83897 1.90483 1.57656 1.71146 1.32115 1.20730 1.02933 0.92756 0.83176 1.45706 1.65477 1.13992 1.10015 1.16863 0.77247 0.81242 0.86074 1.90835 1.51186 1.58020 1.44115 1.21704 1.14165 0.94555 0.85934 1.22276 0.98926 0.95483 0.97183 1.22244 1.07851 1.00817 0.93905 1.25479 0.98900 0.89742 0.91947 1.84108 1.66487 1.41797 1.14938 0.91066 0.92979 0.92608 0.91957 0.92333 0.94004 0.92660 0.88595 0.94721 0.91462 0.88977 0.89441 0.74761 0.81871 0.79209 0.72803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.70 9.91 71.98 0.71 -2.99 16 2 C -0.12 -3.72 5.93 30.59 0.18 -3.54 16 3 C -0.12 -4.66 5.50 30.59 0.17 -4.49 16 4 C 0.12 5.51 4.90 86.38 0.42 5.93 16 5 N -0.44 -21.80 2.56 -635.55 -1.63 -23.43 16 6 C -0.37 -18.38 8.70 84.04 0.73 -17.65 16 7 H 0.10 4.74 6.97 -2.91 -0.02 4.72 16 8 C 0.01 0.58 4.92 84.93 0.42 1.00 16 9 N -0.88 -45.56 11.34 21.66 0.25 -45.32 16 10 Si 0.98 38.71 29.61 68.60 2.03 40.74 16 11 H -0.27 -10.72 7.11 99.48 0.71 -10.01 16 12 H -0.28 -10.69 7.11 99.48 0.71 -9.98 16 13 H -0.26 -9.99 7.11 99.48 0.71 -9.29 16 14 C 0.45 21.79 7.67 87.65 0.67 22.46 16 15 O -0.63 -32.10 15.34 -3.08 -0.05 -32.15 16 16 C 0.13 5.63 4.81 85.63 0.41 6.04 16 17 N -0.70 -27.27 5.52 -470.83 -2.60 -29.87 16 18 C 0.60 22.37 7.79 86.44 0.67 23.05 16 19 O -0.56 -23.71 16.86 -4.33 -0.07 -23.79 16 20 C -0.11 -3.41 7.13 24.07 0.17 -3.24 16 21 C -0.12 -2.90 10.62 22.39 0.24 -2.66 16 22 C -0.23 -3.84 10.87 22.07 0.24 -3.60 16 23 C 0.01 0.14 12.08 67.10 0.81 0.95 16 24 O -0.18 -4.65 10.40 -5.04 -0.05 -4.70 16 25 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 26 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 27 H 0.05 1.39 8.14 -2.38 -0.02 1.37 16 28 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 29 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 30 H 0.04 1.76 8.14 -2.39 -0.02 1.74 16 31 H 0.05 2.23 8.14 -2.38 -0.02 2.21 16 32 H 0.10 4.82 5.35 -2.38 -0.01 4.81 16 33 H 0.03 1.73 7.59 -2.39 -0.02 1.71 16 34 H 0.28 13.32 8.31 -92.71 -0.77 12.55 16 35 H 0.09 3.86 7.65 -2.39 -0.02 3.84 16 36 H 0.09 3.93 8.10 -2.38 -0.02 3.91 16 37 H 0.41 15.92 7.19 -92.71 -0.67 15.25 16 38 H 0.16 3.77 8.06 -2.91 -0.02 3.74 16 39 H 0.19 1.75 8.06 -2.91 -0.02 1.73 16 40 H 0.26 1.38 8.06 -2.91 -0.02 1.35 16 Total: -1.00 -65.07 346.11 4.12 -60.95 By element: Atomic # 1 Polarization: 35.89 SS G_CDS: 0.39 Total: 36.28 kcal Atomic # 6 Polarization: 15.42 SS G_CDS: 5.85 Total: 21.27 kcal Atomic # 7 Polarization: -94.64 SS G_CDS: -3.98 Total: -98.62 kcal Atomic # 8 Polarization: -60.46 SS G_CDS: -0.17 Total: -60.63 kcal Atomic # 14 Polarization: 38.71 SS G_CDS: 2.03 Total: 40.74 kcal Total: -65.07 4.12 -60.95 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001142118104.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.173 kcal (2) G-P(sol) polarization free energy of solvation -65.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.245 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.954 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds