Wall clock time and date at job start Tue Mar 31 2020 07:43:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09005 * 109.47261 * 2 1 4 4 C 1.50710 * 109.47110 * 240.00665 * 2 1 3 5 5 H 1.07998 * 119.99852 * 239.99562 * 4 2 1 6 6 C 1.37879 * 119.99961 * 59.99536 * 4 2 1 7 7 N 1.31518 * 120.00083 * 0.02562 * 6 4 2 8 8 Si 1.86796 * 119.99954 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.47230 * 90.00127 * 8 6 4 10 10 H 1.48499 * 109.47017 * 210.00004 * 8 6 4 11 11 H 1.48500 * 109.46787 * 329.99983 * 8 6 4 12 12 C 1.50692 * 109.47501 * 120.00553 * 2 1 3 13 13 O 1.21284 * 120.00023 * 120.00305 * 12 2 1 14 14 N 1.34779 * 120.00237 * 299.99909 * 12 2 1 15 15 C 1.46496 * 120.00320 * 180.02562 * 14 12 2 16 16 H 1.09002 * 109.47260 * 34.99887 * 15 14 12 17 17 C 1.52999 * 109.47135 * 275.00030 * 15 14 12 18 18 O 1.42903 * 109.47256 * 295.00379 * 17 15 14 19 19 C 1.53002 * 109.47141 * 155.00131 * 15 14 12 20 20 H 1.09000 * 109.47132 * 184.99855 * 19 15 14 21 21 O 1.42898 * 109.47087 * 64.99848 * 19 15 14 22 22 C 1.50697 * 109.47035 * 305.00007 * 19 15 14 23 23 C 1.38675 * 120.41662 * 264.99768 * 22 19 15 24 24 C 1.38632 * 118.42268 * 180.02562 * 23 22 19 25 25 C 1.38226 * 119.15606 * 359.97438 * 24 23 22 26 26 N 1.31858 * 120.76919 * 0.02562 * 25 24 23 27 27 C 1.31883 * 121.72015 * 359.70073 * 26 25 24 28 28 H 1.09005 * 109.47261 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47444 * 299.99349 * 1 2 3 30 30 H 1.08996 * 109.47315 * 59.99439 * 1 2 3 31 31 H 0.96999 * 120.00324 * 179.97438 * 7 6 4 32 32 H 0.97000 * 119.99742 * 0.02562 * 14 12 2 33 33 H 1.08997 * 109.47286 * 174.99939 * 17 15 14 34 34 H 1.09008 * 109.47201 * 54.99719 * 17 15 14 35 35 H 0.96700 * 114.00311 * 180.02562 * 18 17 15 36 36 H 0.96699 * 114.00130 * 299.99615 * 21 19 15 37 37 H 1.08006 * 120.79040 * 359.97438 * 23 22 19 38 38 H 1.07991 * 120.42114 * 180.02562 * 24 23 22 39 39 H 1.07998 * 119.61347 * 179.97438 * 25 24 23 40 40 H 1.07996 * 119.61683 * 180.31231 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2306 5 1 2.6533 -1.5884 -1.1316 6 6 1.6991 -0.2392 -2.4828 7 7 0.9434 0.8304 -2.6034 8 14 2.3212 -1.1200 -4.0081 9 1 1.3426 -2.1613 -4.4121 10 1 2.4863 -0.1409 -5.1124 11 1 3.6292 -1.7579 -3.7124 12 6 2.0323 -0.7105 1.2303 13 8 2.7297 -1.6965 1.1189 14 7 1.7068 -0.2502 2.4545 15 6 2.1957 -0.9405 3.6506 16 1 3.1951 -1.3323 3.4610 17 6 1.2522 -2.0948 3.9946 18 8 -0.0277 -1.5722 4.3563 19 6 2.2470 0.0427 4.8218 20 1 2.6935 -0.4465 5.6875 21 8 0.9215 0.4673 5.1456 22 6 3.0779 1.2395 4.4369 23 6 4.4240 1.2947 4.7658 24 6 5.1492 2.4155 4.3920 25 6 4.5110 3.4333 3.7082 26 7 3.2290 3.3467 3.4121 27 6 2.5096 2.2934 3.7472 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5137 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 0.7092 1.1621 -3.4843 32 1 1.1489 0.5383 2.5436 33 1 1.6622 -2.6625 4.8299 34 1 1.1463 -2.7481 3.1284 35 1 -0.6780 -2.2495 4.5879 36 1 0.4626 0.9119 4.4197 37 1 4.8960 0.4841 5.3012 38 1 6.1995 2.4921 4.6312 39 1 5.0687 4.3100 3.4137 40 1 1.4631 2.2559 3.4831 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001151383901.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:43:07 Heat of formation + Delta-G solvation = -100.734947 kcal Electronic energy + Delta-G solvation = -24613.544259 eV Core-core repulsion = 21007.449619 eV Total energy + Delta-G solvation = -3606.094640 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.65218 -39.15352 -37.55548 -36.00981 -33.79034 -33.65890 -32.72107 -31.36395 -30.68196 -29.06681 -25.92658 -25.11807 -23.72247 -23.12943 -22.27564 -20.71811 -19.54949 -17.78769 -17.30650 -16.87316 -16.48400 -16.32579 -16.08789 -15.46077 -14.82057 -14.53653 -14.35827 -14.05683 -13.92348 -13.56670 -13.33447 -13.28145 -13.14123 -12.60514 -12.32053 -12.18258 -11.75537 -11.52001 -11.35471 -11.00734 -10.71624 -10.66052 -10.32629 -10.24810 -9.95837 -9.89875 -9.74240 -9.41110 -9.01998 -8.96319 -8.63034 -8.52709 -8.31712 -6.01580 -4.05005 1.02476 1.22116 3.33861 3.39554 3.45602 3.65180 3.67266 3.77498 4.24198 4.33546 4.46452 4.49014 4.55868 4.72254 4.79093 4.94135 4.96631 5.26406 5.31448 5.39987 5.45284 5.49654 5.65493 5.71020 5.85238 6.00358 6.12295 6.26769 6.60052 6.64497 6.85183 6.92283 6.99614 7.49088 7.56903 7.76564 7.77866 7.94099 7.97880 8.13247 8.41196 9.03241 9.19331 9.60287 11.05948 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.014962 B = 0.005292 C = 0.004463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1870.963964 B = 5289.356453 C = 6272.483565 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.030 3.970 3 H 0.051 0.949 4 C -0.501 4.501 5 H 0.073 0.927 6 C 0.058 3.942 7 N -0.895 5.895 8 Si 0.899 3.101 9 H -0.281 1.281 10 H -0.287 1.287 11 H -0.273 1.273 12 C 0.524 3.476 13 O -0.547 6.547 14 N -0.734 5.734 15 C 0.118 3.882 16 H 0.102 0.898 17 C 0.072 3.928 18 O -0.551 6.551 19 C 0.153 3.847 20 H 0.115 0.885 21 O -0.528 6.528 22 C -0.165 4.165 23 C -0.067 4.067 24 C -0.171 4.171 25 C 0.097 3.903 26 N -0.475 5.475 27 C 0.116 3.884 28 H 0.030 0.970 29 H 0.012 0.988 30 H 0.093 0.907 31 H 0.261 0.739 32 H 0.391 0.609 33 H 0.045 0.955 34 H 0.053 0.947 35 H 0.370 0.630 36 H 0.372 0.628 37 H 0.134 0.866 38 H 0.135 0.865 39 H 0.155 0.845 40 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.672 1.082 17.318 17.556 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.009 3.991 3 H 0.069 0.931 4 C -0.540 4.540 5 H 0.091 0.909 6 C -0.142 4.142 7 N -0.534 5.534 8 Si 0.727 3.273 9 H -0.207 1.207 10 H -0.213 1.213 11 H -0.198 1.198 12 C 0.314 3.686 13 O -0.423 6.423 14 N -0.389 5.389 15 C 0.012 3.988 16 H 0.120 0.880 17 C -0.008 4.008 18 O -0.355 6.355 19 C 0.092 3.908 20 H 0.132 0.868 21 O -0.333 6.333 22 C -0.167 4.167 23 C -0.093 4.093 24 C -0.191 4.191 25 C -0.060 4.060 26 N -0.183 5.183 27 C -0.041 4.041 28 H 0.049 0.951 29 H 0.031 0.969 30 H 0.111 0.889 31 H 0.070 0.930 32 H 0.226 0.774 33 H 0.063 0.937 34 H 0.071 0.929 35 H 0.215 0.785 36 H 0.220 0.780 37 H 0.152 0.848 38 H 0.152 0.848 39 H 0.172 0.828 40 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 3.173 1.475 17.071 17.426 hybrid contribution 0.208 -1.116 -0.845 1.415 sum 3.381 0.359 16.227 16.579 Atomic orbital electron populations 1.21718 0.96393 0.99755 1.00933 1.18863 0.94206 0.96786 0.89238 0.93104 1.21123 1.31044 1.12780 0.89019 0.90894 1.24948 0.95146 0.95046 0.99079 1.69873 1.37064 1.22966 1.23528 0.86468 0.79407 0.79259 0.82168 1.20672 1.21277 1.19823 1.22008 0.78026 0.84150 0.84373 1.90520 1.38160 1.26981 1.86672 1.46241 1.55194 1.32387 1.05077 1.21643 0.98468 0.92617 0.86065 0.88017 1.22468 0.84731 0.95252 0.98333 1.86582 1.21741 1.36707 1.90449 1.20937 0.83143 0.89944 0.96820 0.86781 1.86645 1.25558 1.79438 1.41628 1.21551 0.96047 0.98502 1.00613 1.21381 0.93118 0.97683 0.97161 1.22112 1.01306 0.95146 1.00557 1.22805 0.90779 0.98269 0.94137 1.67697 1.07547 1.25004 1.18075 1.22386 0.99751 0.88807 0.93176 0.95083 0.96893 0.88884 0.92954 0.77417 0.93682 0.92878 0.78457 0.77976 0.84833 0.84758 0.82756 0.83481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.01 8.87 37.15 0.33 -2.68 16 2 C 0.03 0.75 2.64 -92.93 -0.25 0.51 16 3 H 0.05 1.35 8.14 -51.93 -0.42 0.92 16 4 C -0.50 -14.31 8.37 -34.43 -0.29 -14.60 16 5 H 0.07 2.20 6.75 -52.49 -0.35 1.84 16 6 C 0.06 1.64 5.30 -17.82 -0.09 1.55 16 7 N -0.89 -25.39 11.32 55.43 0.63 -24.77 16 8 Si 0.90 22.00 29.54 -169.99 -5.02 16.97 16 9 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 10 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 11 H -0.27 -6.73 7.11 56.52 0.40 -6.32 16 12 C 0.52 11.71 7.11 -10.99 -0.08 11.63 16 13 O -0.55 -13.86 15.12 5.55 0.08 -13.78 16 14 N -0.73 -12.29 4.11 -53.81 -0.22 -12.51 16 15 C 0.12 1.65 2.35 -67.93 -0.16 1.49 16 16 H 0.10 1.54 7.58 -51.93 -0.39 1.14 16 17 C 0.07 0.93 6.85 37.16 0.25 1.18 16 18 O -0.55 -6.68 11.13 -58.58 -0.65 -7.34 16 19 C 0.15 1.75 3.13 -27.88 -0.09 1.67 16 20 H 0.11 1.11 8.06 -51.93 -0.42 0.69 16 21 O -0.53 -6.38 10.74 -58.58 -0.63 -7.01 16 22 C -0.16 -2.02 4.78 -104.48 -0.50 -2.52 16 23 C -0.07 -0.74 9.84 -39.27 -0.39 -1.13 16 24 C -0.17 -1.82 10.11 -39.44 -0.40 -2.22 16 25 C 0.10 1.19 11.18 -17.54 -0.20 0.99 16 26 N -0.48 -7.00 10.36 -13.25 -0.14 -7.13 16 27 C 0.12 1.58 9.36 -17.55 -0.16 1.42 16 28 H 0.03 0.72 8.14 -51.93 -0.42 0.29 16 29 H 0.01 0.24 7.56 -51.93 -0.39 -0.15 16 30 H 0.09 2.38 6.07 -51.93 -0.32 2.06 16 31 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 32 H 0.39 5.96 5.04 -40.82 -0.21 5.76 16 33 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 34 H 0.05 0.82 8.14 -51.92 -0.42 0.40 16 35 H 0.37 3.13 9.12 45.56 0.42 3.54 16 36 H 0.37 4.12 6.22 45.56 0.28 4.41 16 37 H 0.13 1.10 8.06 -52.48 -0.42 0.68 16 38 H 0.13 1.03 8.06 -52.49 -0.42 0.60 16 39 H 0.16 1.47 8.06 -52.49 -0.42 1.04 16 40 H 0.15 1.79 5.64 -52.49 -0.30 1.50 16 LS Contribution 330.66 15.07 4.98 4.98 Total: -1.00 -34.21 330.66 -6.75 -40.96 By element: Atomic # 1 Polarization: 16.10 SS G_CDS: -3.77 Total: 12.33 kcal Atomic # 6 Polarization: -0.70 SS G_CDS: -2.01 Total: -2.72 kcal Atomic # 7 Polarization: -44.68 SS G_CDS: 0.27 Total: -44.41 kcal Atomic # 8 Polarization: -26.92 SS G_CDS: -1.20 Total: -28.12 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -34.21 -6.75 -40.96 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001151383901.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.772 kcal (2) G-P(sol) polarization free energy of solvation -34.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.963 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.735 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds